Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006062

Physical Location & Seq

Genomic Coordinates Forward (+)

29214220 .. 29215832

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTTCTCCACTCGCCGCAAAATCAAACCTAACCACGACTCGATCGGCTTCGTTAAACATTCCACATTCGACACGTACCAATCACAACCACGATCTCCGGTATAGTCTTTCCGCTGGTCCTCGTACGAACGAAGATCGACCAGCTTCTGGGAACGGCGTCGCCGGAATCCTCTATAAATGGGTAAACTACGGCCAAGGATGGAAACGACGGTGGTTCGTACTCCAGGACGGTGTTTTGTCGTATTATAGAATCCATGGTCCCGATAAAATATCTCTCTCCGTTGAGATGGATCGGAGATCTAAACTGATCGGCGGCGAATCTTTACGGTTTATTTGCCGACATAGCAAACGCGGTGATGTTCATAGCCCCGGGAAACCTCTCGGCCAAATTCACCTCAAGGTTTCATCGATTGGACAAAGCATATCAGATGGCAAGAGATTCACTGTATTCACGGGCACGAAGAGTCTGCATTTACGAGCAGCAACGAGCGAGGATCGTGCCTCTTGGATCGAAGCATTGAAAGCTGTTAAAGAAACGTTTCCAAGAATGTCAAACGAAGAACTAATGGCATCGACGACTAATGTCTCAGTCTCGACCGATAAGCTAAGGCAGAGATTAATGGAAGAAGAGGTAGATGAGACAATCATCAAAGATTGCGAAGACATAATGAAGAACAATTTCTTAGCATTGCATGATGAGGTTATGTCTCTAAAACGGTACCAATATCATCTTATAGATTCTCTCAAGAACGTCAGTAACTCACCTATAAGACCCAGTAACCAAAGTTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP PH_11

Protein Analysis

265

Amino Acids

29.89

Weight (kDa)

9.64

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	56 - 177	7.8e-10	PH domain
PH_11	PF15413	57 - 175	4.3e-13	Pleckstrin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77730 AT2G31020 AT4G08180 AT4G08180 AT4G08180 AT4G08180
fragaria_vesca	FvH4_2g26250 FvH4_2g26250 FvH4_2g26250
malus_domestica	MD00G1220800.v1.1 MD08G1170000.v1.1 MD15G1357000.v1.1
prunus_persica	Prupe.1G504000_v2.0.a1 Prupe.1G504000_v2.0.a1
pyrus_communis	pycom08g14550 pycom15g31910
rosa_chinensis	RchiOBHm_Chr6g0294861
rosa_laevigata	RLG00000011836
rosa_multiflora	Rmu_co8074688.1_g000001 Rmu_sc0008966.1_g000015
rosa_roxburghii	Rroxscaffold_7G00172950
rosa_rugosa	Rorug06G0247200
rosa_samantha	Rh6AG360900 Rh6BG367500 Rh6CG374700 Rh6DG361400
rosa_wichuraiana	Rw6G031480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccII	CGCG	1 cut(s)	354
AciI	CCGC	4 cut(s)	18, 114, 315, 354
AclI	AACGTT	1 cut(s)	539
AclWI	GGATC	3 cut(s)	300, 504, 518
AcoI	YGGCCR	2 cut(s)	193, 385
AcsI	RAATTY	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	4 cut(s)	79, 127, 222, 722
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	146, 527, 607
AluI	AGCT	3 cut(s)	146, 527, 607
Alw26I	GTCTC	4 cut(s)	592, 598, 635, 714
AlwI	GGATC	3 cut(s)	300, 504, 518
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	193, 385
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	390
AseI	ATTAAT	1 cut(s)	620
Asp700I	GAANNNNTTC	2 cut(s)	540, 680
Asp718I	GGTACC	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	119, 260
AsuC2I	CCSGG	2 cut(s)	372, 373
AsuHPI	GGTGA	3 cut(s)	368, 386, 756
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	119, 260
BaeGI	GKGCMC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	3 cut(s)	195, 283, 425
BceAI	ACGGC	2 cut(s)	172, 208
BcgI	CGANNNNNNTGC	4 cut(s)	451, 482, 485, 516
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	2 cut(s)	372, 373
BcoDI	GTCTC	4 cut(s)	592, 598, 635, 714
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	3 cut(s)	18, 316, 483
BlsI	GCNGC	3 cut(s)	19, 317, 484
Bme1390I	CCNGG	3 cut(s)	227, 372, 373
Bme18I	GGWCC	2 cut(s)	119, 260
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	119, 260
BmiI	GGNNCC	2 cut(s)	262, 722
BmrFI	CCNGG	3 cut(s)	227, 372, 373
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	771
BoxI	GACNNNNGTC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	383, 731
BpuMI	CCSGG	2 cut(s)	372, 373
Bsa29I	ATCGAT	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	196, 256, 370, 371
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	196, 256, 370, 371
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	2 cut(s)	47, 600
BshFI	GGCC	2 cut(s)	195, 387
BshNI	GGYRCC	1 cut(s)	720
BshVI	ATCGAT	1 cut(s)	410
BsiEI	CGRYCG	2 cut(s)	47, 600
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	100, 165, 372
BsiWI	CGTACG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	4 cut(s)	592, 598, 635, 714
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	195, 387
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	4 cut(s)	18, 114, 315, 354
BspANI	GGCC	2 cut(s)	195, 387
BspCNI	CTCAG	1 cut(s)	602
BspDI	ATCGAT	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	794
BspLI	GGNNCC	2 cut(s)	262, 722
BspPI	GGATC	3 cut(s)	300, 504, 518
BspT107I	GGYRCC	1 cut(s)	720
BsrDI	GCAATG	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	777
BssECI	CCNNGG	4 cut(s)	196, 256, 370, 371
BssMI	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	196, 256
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	213, 233, 330, 448, 720
Bst6I	CTCTTC	2 cut(s)	458, 624
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	589, 608, 685
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	8 cut(s)	47, 97, 139, 295, 302, 312, 499, 513
BstMAI	GTCTC	4 cut(s)	592, 598, 635, 714
BstMBI	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
BstMCI	CGRYCG	2 cut(s)	47, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 524
BstNI	CCWGG	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	584
BstSCI	CCNGG	3 cut(s)	225, 370, 371
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	195, 387
BsuTUI	ATCGAT	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	119, 260
Cfr9I	CCCGGG	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	410
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	78, 126, 221, 721
CviAII	CATG	3 cut(s)	257, 695, 795
CviJI	RGCY	7 cut(s)	50, 146, 195, 369, 387, 527, 607
CviKI_1	RGCY	7 cut(s)	50, 146, 195, 369, 387, 527, 607
CviQI	GTAC	4 cut(s)	78, 126, 221, 721
DdeI	CTNAG	3 cut(s)	589, 608, 685
DpnI	GATC	8 cut(s)	46, 96, 138, 294, 301, 311, 498, 512
DpnII	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
EaeI	YGGCCR	2 cut(s)	193, 385
Eam1104I	CTCTTC	2 cut(s)	458, 624
EarI	CTCTTC	2 cut(s)	458, 624
Eco130I	CCWWGG	2 cut(s)	196, 256
Eco47I	GGWCC	2 cut(s)	119, 260
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	196, 256
ErhI	CCWWGG	2 cut(s)	196, 256
FaeI	CATG	3 cut(s)	260, 698, 798
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	256, 694, 794
Fnu4HI	GCNGC	3 cut(s)	18, 316, 483
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	18, 316, 483
GluI	GCNGC	3 cut(s)	18, 316, 483
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	195, 387
HapII	CCGG	3 cut(s)	100, 165, 372
HgaI	GACGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	260, 698, 798
HinfI	GANTC	7 cut(s)	40, 168, 252, 320, 441, 466, 740
HpaII	CCGG	3 cut(s)	100, 165, 372
HphI	GGTGA	3 cut(s)	368, 386, 756
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	297, 430
Hpy188III	TCNNGA	4 cut(s)	263, 595, 748, 795
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	3 cut(s)	164, 213, 580
HpyCH4III	ACNGT	5 cut(s)	213, 233, 330, 448, 720
HpyCH4IV	ACGT	3 cut(s)	76, 539, 753
HpyCH4V	TGCA	2 cut(s)	472, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 524
HpyF3I	CTNAG	3 cut(s)	589, 608, 685
HpySE526I	ACGT	3 cut(s)	76, 539, 753
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	260, 698, 798
KpnI	GGTACC	1 cut(s)	724
Kzo9I	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
LpnPI	CCDG	9 cut(s)	102, 113, 135, 156, 178, 212, 239, 385, 790
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	581
MaeII	ACGT	3 cut(s)	76, 539, 753
MaeIII	GTNAC	2 cut(s)	758, 779
MalI	GATC	8 cut(s)	46, 96, 138, 294, 301, 311, 498, 512
MboI	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
MboII	GAAGA	7 cut(s)	146, 475, 572, 638, 641, 674, 685
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	2 cut(s)	390, 679
MlyI	GAGTC	2 cut(s)	34, 475
MnlI	CCTC	8 cut(s)	132, 182, 390, 407, 487, 514, 625, 694
MroXI	GAANNNNTTC	2 cut(s)	540, 680
MseI	TTAA	3 cut(s)	56, 531, 620
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	100, 165, 372
MspR9I	CCNGG	3 cut(s)	227, 372, 373
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	345, 524
NciI	CCSGG	2 cut(s)	372, 373
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
NlaIII	CATG	3 cut(s)	260, 698, 798
NlaIV	GGNNCC	2 cut(s)	262, 722
NmeAIII	GCCGAG	1 cut(s)	363
PagI	TCATGA	1 cut(s)	794
PdmI	GAANNNNTTC	2 cut(s)	540, 680
PfeI	GAWTC	5 cut(s)	168, 252, 320, 441, 740
Pfl23II	CGTACG	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	19, 317, 484
Ple19I	CGATCG	1 cut(s)	47
PleI	GAGTC	2 cut(s)	34, 474
PpsI	GAGTC	2 cut(s)	34, 474
Ppu21I	YACGTR	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	620
Psp1406I	AACGTT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	262, 722
PspPI	GGNCC	2 cut(s)	119, 260
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	299
PvuI	CGATCG	1 cut(s)	47
RsaI	GTAC	4 cut(s)	79, 127, 222, 722
RsaNI	GTAC	4 cut(s)	78, 126, 221, 721
SaqAI	TTAA	3 cut(s)	56, 531, 620
SatI	GCNGC	3 cut(s)	18, 316, 483
Sau3AI	GATC	8 cut(s)	44, 94, 136, 292, 299, 309, 496, 510
Sau96I	GGNCC	2 cut(s)	119, 260
SchI	GAGTC	2 cut(s)	34, 475
ScrFI	CCNGG	3 cut(s)	227, 372, 373
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	581
SinI	GGWCC	2 cut(s)	119, 260
SmaI	CCCGGG	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	398, 746
SmoI	CTYRAG	2 cut(s)	398, 746
Sse9I	AATT	2 cut(s)	390, 679
SsiI	CCGC	4 cut(s)	18, 114, 315, 354
StyD4I	CCNGG	3 cut(s)	225, 370, 371
StyI	CCWWGG	2 cut(s)	196, 256
TaaI	ACNGT	5 cut(s)	213, 233, 330, 448, 720
TaiI	ACGT	3 cut(s)	79, 542, 756
TaqI	TCGA	7 cut(s)	43, 71, 139, 410, 513, 575, 596
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	2 cut(s)	390, 679
TauI	GCSGC	2 cut(s)	20, 318
TfiI	GAWTC	5 cut(s)	168, 252, 320, 441, 740
Tru1I	TTAA	3 cut(s)	56, 531, 620
Tru9I	TTAA	3 cut(s)	56, 531, 620
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	4 cut(s)	353, 396, 686, 783
TspGWI	ACGGA	1 cut(s)	271
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	119, 260
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	371
XmnI	GAANNNNTTC	2 cut(s)	540, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.