Rorug06G0247200

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006062
Physical Location & Seq
Reverse (-)
39364834 .. 39369429
4596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0247200.1

Sequence Viewer

Length: 2586 bp
ATGGAGGAAGCAACCTCACTCCCCAAAGCTCTACTCAACAACACCAACAATCCCAAACTCGCATGGCACCTCTTCAAGCGCATTCTCTCCTCCTCACATCTCTCCCTCCGCTCCCTCACCATCATAGCCCGCATCCTCATCTCCGCCAAAATGCACCCCGAAATCGACGCCCTCCACCACCTCCTCCTCCACTCACAGCCCCCCCAAACCCTCCGCCCTTGCCTCGTTTCCCTCGTGCGAATCTTCGCCAAGTCACGCCTCGCCGACAAGACCCTTTCGCATTTTAAGTCTCTCCGAAGCCACTTCCCCAATGACCCTCCTTCTGTTTATTTGTATAACTTGCTTCTCCAGTCCGCTCTCAGGGAGAACGATGTGGATTACGTGTTGTGGTTGTACAAGGATATGATTGTTTCCGGGGTTAAGCCCGAAACGTATACTTTTAATCTTCTGATCTGCGCGCTGTGCGACTGTGGTCGTTTGGAAGATGCACGCCAGGTGTTCGATAAAATGCGTGACAAGGGTTGTCAGCCGAATGAGTACAGCGTTGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGCTTAGTAGTGGAGGGTTGGAGGTTTTGGATTGTGGTGTTGTGCCCAATAGGGTTGTGTATAATACTTTGGTTTCGAGTTTTTGTAAAGAAGGCAGGACTGATGAGGCCGAGAAATTGGTGGAGAGGATGCGAGAGGAGGGCATGTTTCCGGATGTCATTACTTTCAATTCGAGGATATCGGCTCTATGTAGTGCAGGGAAGATTCTTGAAGCGTCTAGAATATTTAGAGATATGCATATGGATCAGGCTTTGGGGCTGCCGCAACCCAATGTTGTAACGTATAATCTGATGTTACAAGGATTTTGCAAGGAAGGGATGTTAGAGGAAGCAGAGAGCTTGTTCAAATCTACGGAAAAGGCTGGTGGTTTGATTAATATAGAGAGCTATAATATATGGTTGTTGGGTTTGGTCAGGAATAAGAAGCTCTTGGAGGCTCGACTGGTTCTGAAAGAGATGGTAGATAAGGGAATAGAACCCAATATATACTCATATAACATTGTGATAAATGGGTTATGCAAAAATGGGATGCTCCGTGATGCAAGAATTGTGATGGGTCTGATGGCAAGAAACAATATTTCGCCAGATACTGTTACCTACAGTACTTTACTACACGGATACTGCAATAAAGGGAAGGTATTTGAAGCCAACAATGTTCTGCAAGAGATGATAACAAAGAATTGCTTCCCAAATACTCATACTTGCAACATTCTGCTGCACAGTTTATGGAAAGAGGGAAGAACATCAGAAGCAGAGGAACTGCTGCAAAAGATGAATGAGAGAGGTTATGGTTTAGATACTGTGACCTGCAACATCGTGATCGATGGTCTGTGCAATGATGGGAAATTGGACAAAGCAATTGAAATTGTAAGTGGGATGTGGACTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAATTCCTTTGTTGGCCTGGTTGATGATAGTAATAATGGGAATAAATGCCTTCCAGATTTGATCTCATATTCAACCATTATTAGTGGGTTATGCAAGGCTGGGAGGCTTGATGAAGCTAAGAAGAAGTTCATGGAGATGATGGGCAAAAACTTGCACCCTGATTCAGTGATTTATGATACTTTTATACATAGCTTTTGTAAACAAGGAAGGATATCATCTGCATTTCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAGACTTATAATTCACTAATCCTGGGCTTAGGGAGTAAAAAGCAAATATTTGAAATATATGGGCTGATGGATGAAATGAAAGAGAGGGGAGTCCCTCCTGATGTCTGTACTTACAATAATATGATGTACTGTCTCTGTGAAGTAGAGAGAGTCAAAGATGCAACTTCTCTTTTAGATGAAATGCTGCAAAAGGGCATATCCCCGAATATTTCTACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACAGGAGTTATTTGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTCGCAAAAGCTACAGAGCTATTTGAAGAAGCATTGGACAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTCATTGATAGACTTTGCAAGGATCAAAAGTTAGAGGATGCCTGTAGCATTCTTCACAATATGATGAATAAGGGATACAGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTGGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTGGTGGAAAACCAAAGTCTTGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAATCGTATTGAAAACTCTTAAGAGGGTGCAGAAAGGCTGGGGTCGAGCGAATCTAACGAGTTTGCGAACCCGGAAAGATGAATTTCTTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

861

Amino Acids

96.83

Weight (kDa)

7.82

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 107 - 156 3.2e-09 PPR repeat family
PPR_3 PF13812 132 - 178 6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 139 - 171 1.6e-10 PPR repeat
PPR_2 PF13041 142 - 191 2.6e-15 PPR repeat family
PPR PF01535 145 - 175 1.7e-07 PPR repeat
PPR_3 PF13812 204 - 254 7.8e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 205 - 237 3.9e-13 PPR repeat
PPR_2 PF13041 208 - 256 1e-13 PPR repeat family
PPR PF01535 211 - 240 1.1e-08 PPR repeat
PPR_1 PF12854 240 - 271 3.4e-08 PPR repeat
PPR_1 PF12854 281 - 308 8.2e-10 PPR repeat
PPR_2 PF13041 282 - 324 1.2e-09 PPR repeat family
PPR PF01535 285 - 312 1.2e-07 PPR repeat
PPR_3 PF13812 312 - 362 7.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 318 - 366 2.3e-13 PPR repeat family
PPR_long PF17177 335 - 452 3.9e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 348 - 373 2.8e-09 PPR repeat
PPR_2 PF13041 352 - 401 6.8e-16 PPR repeat family
TPR_24 PF23276 376 - 481 1.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 380 - 432 3.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 384 - 415 3.2e-11 PPR repeat
PPR_2 PF13041 387 - 434 1.4e-14 PPR repeat family
PPR PF01535 390 - 420 6.6e-07 PPR repeat
PPR_2 PF13041 422 - 471 5.6e-12 PPR repeat family
PPR_1 PF12854 454 - 485 6.1e-07 PPR repeat
PPR_1 PF12854 513 - 543 7.3e-12 PPR repeat
PPR_2 PF13041 515 - 553 6.4e-08 PPR repeat family
PPR PF01535 518 - 547 9.2e-07 PPR repeat
PPR_3 PF13812 541 - 594 1.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 546 - 579 3.7e-10 PPR repeat
PPR_2 PF13041 550 - 597 2.6e-13 PPR repeat family
PPR_long PF17177 567 - 668 2.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 586 - 633 5e-12 PPR repeat family
PPR_3 PF13812 609 - 667 5.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 616 - 648 4.9e-08 PPR repeat
PPR_2 PF13041 620 - 669 1.6e-16 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1770
Acc36I ACCTGC 1 cut(s) 1391
AccB1I GGYRCC 1 cut(s) 66
AccBSI CCGCTC 2 cut(s) 111, 356
AccI GTMKAC 1 cut(s) 434
AccII CGCG 2 cut(s) 458, 561
AccIII TCCGGA 1 cut(s) 727
AciI CCGC 8 cut(s) 109, 130, 144, 214, 354, 561, 839, 1472
AclWI GGATC 2 cut(s) 828, 2223
AcoI YGGCCR 1 cut(s) 2062
AcsI RAATTY 2 cut(s) 1492, 2570
AcuI CTGAAG 1 cut(s) 1963
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 5 cut(s) 395, 539, 1180, 1870, 1889
AfiI CCNNNNNNNGG 1 cut(s) 360
AflII CTTAAG 1 cut(s) 2507
AflIII ACRYGT 1 cut(s) 381
AjnI CCWGG 3 cut(s) 492, 1506, 1782
Alw26I GTCTC 2 cut(s) 294, 1898
AlwI GGATC 2 cut(s) 828, 2223
AlwNI CAGNNNCTG 1 cut(s) 1166
Aor13HI TCCGGA 1 cut(s) 727
AoxI GGCC 3 cut(s) 684, 1504, 2062
ApeKI GCWGC 4 cut(s) 835, 1291, 1339, 1945
ApoI RAATTY 2 cut(s) 1492, 2570
AseI ATTAAT 2 cut(s) 951, 1988
Asp700I GAANNNNTTC 2 cut(s) 1259, 1616
AspLEI GCGC 3 cut(s) 81, 458, 460
AsuC2I CCSGG 2 cut(s) 415, 2560
AsuHPI GGTGA 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 624
BalI TGGCCA 1 cut(s) 2064
BanI GGYRCC 1 cut(s) 66
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 4 cut(s) 822, 1278, 1326, 1932
BcgI CGANNNNNNTGC 2 cut(s) 2473, 2507
BciT130I CCWGG 3 cut(s) 494, 1508, 1784
BciVI GTATCC 2 cut(s) 1187, 2261
BcnI CCSGG 2 cut(s) 415, 2560
BcoDI GTCTC 2 cut(s) 294, 1898
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 3 cut(s) 1174, 2130, 2236
BfrI CTTAAG 1 cut(s) 2507
BfuAI ACCTGC 1 cut(s) 1391
BfuI GTATCC 2 cut(s) 1187, 2261
BglII AGATCT 1 cut(s) 2191
BisI GCNGC 6 cut(s) 836, 839, 1292, 1340, 1473, 1946
BlsI GCNGC 6 cut(s) 837, 840, 1293, 1341, 1474, 1947
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 5 cut(s) 415, 494, 1508, 1784, 2560
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 5 cut(s) 415, 494, 1508, 1784, 2560
BmsI GCATC 9 cut(s) 141, 475, 696, 1095, 1105, 1909, 2221, 2294, 2381
BoxI GACNNNNGTC 1 cut(s) 471
BpmI CTGGAG 2 cut(s) 332, 2130
Bpu10I CCTNAGC 1 cut(s) 1789
BpuMI CCSGG 2 cut(s) 415, 2560
Bsa29I ATCGAT 1 cut(s) 1398
BsaAI YACGTR 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 414, 1783
BsaWI WCCGGW 1 cut(s) 727
BsaXI ACNNNNNCTCC 4 cut(s) 707, 737, 2103, 2133
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 4 cut(s) 349, 1023, 2297, 2352
Bse3DI GCAATG 2 cut(s) 1417, 2043
BseAI TCCGGA 1 cut(s) 727
BseBI CCWGG 3 cut(s) 494, 1508, 1784
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 2 cut(s) 414, 1783
BseGI GGATG 9 cut(s) 132, 711, 736, 900, 1110, 1458, 1837, 2236, 2285
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 2 cut(s) 1417, 2043
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 4 cut(s) 349, 1023, 2297, 2352
BsePI GCGCGC 1 cut(s) 456
BseRI GAGGAG 5 cut(s) 79, 82, 173, 176, 728
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 4 cut(s) 822, 1278, 1326, 1932
BseYI CCCAGC 3 cut(s) 575, 1589, 2526
BsgI GTGCAG 3 cut(s) 792, 1277, 2537
Bsh1236I CGCG 2 cut(s) 458, 561
BshFI GGCC 3 cut(s) 686, 1506, 2064
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 1398
BsiSI CCGG 3 cut(s) 414, 728, 2560
BslFI GGGAC 1 cut(s) 1838
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 294, 1898
BsmFI GGGAC 1 cut(s) 1838
BsmI GAATGC 3 cut(s) 81, 1758, 2241
BsnI GGCC 3 cut(s) 686, 1506, 2064
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 727
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
BspACI CCGC 8 cut(s) 109, 130, 144, 214, 354, 561, 839, 1472
BspANI GGCC 3 cut(s) 686, 1506, 2064
BspCNI CTCAG 1 cut(s) 372
BspDI ATCGAT 1 cut(s) 1398
BspEI TCCGGA 1 cut(s) 727
BspFNI CGCG 2 cut(s) 458, 561
BspLI GGNNCC 1 cut(s) 68
BspMI ACCTGC 1 cut(s) 1391
BspPI GGATC 2 cut(s) 828, 2223
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 2507
BsrBI CCGCTC 2 cut(s) 111, 356
BsrDI GCAATG 2 cut(s) 1417, 2043
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 4 cut(s) 349, 1023, 2297, 2352
BssECI CCNNGG 2 cut(s) 414, 1783
BssHII GCGCGC 1 cut(s) 456
BssMI GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
BssNAI GTATAC 1 cut(s) 435
BssNI GRCGYC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 233
Bst1107I GTATAC 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 494, 1508, 1784
Bst4CI ACNGT 6 cut(s) 470, 1168, 1178, 1298, 1378, 1892
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 2507
BstAUI TGTACA 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 130, 458, 490
BstDEI CTNAG 5 cut(s) 359, 581, 1486, 1608, 1789
BstF5I GGATG 9 cut(s) 132, 711, 736, 900, 1110, 1458, 1837, 2236, 2285
BstFNI CGCG 2 cut(s) 458, 561
BstHHI GCGC 3 cut(s) 81, 458, 460
BstKTI GATC 6 cut(s) 453, 823, 1398, 1554, 2194, 2218
BstMAI GTCTC 2 cut(s) 294, 1898
BstMBI GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
BstMWI GCNNNNNNNGC 3 cut(s) 462, 567, 1755
BstNI CCWGG 3 cut(s) 494, 1508, 1784
BstNSI RCATGY 1 cut(s) 724
BstPAI GACNNNNGTC 1 cut(s) 471
BstSCI CCNGG 5 cut(s) 413, 492, 1506, 1782, 2558
BstSFI CTRYAG 3 cut(s) 1174, 2130, 2236
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 2 cut(s) 458, 561
BstV1I GCAGC 4 cut(s) 822, 1278, 1326, 1932
BstX2I RGATCY 1 cut(s) 2191
BstYI RGATCY 1 cut(s) 2191
BstZ17I GTATAC 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 1398
BsuI GTATCC 2 cut(s) 1187, 2261
BsuRI GGCC 3 cut(s) 686, 1506, 2064
BsuTUI ATCGAT 1 cut(s) 1398
BtsCI GGATG 9 cut(s) 132, 711, 736, 900, 1110, 1458, 1837, 2236, 2285
BtsI GCAGTG 1 cut(s) 2491
BtsIMutI CAGTG 2 cut(s) 1662, 2491
BveI ACCTGC 1 cut(s) 1391
Cac8I GCNNGC 3 cut(s) 130, 458, 490
CaiI CAGNNNCTG 1 cut(s) 1166
CfoI GCGC 3 cut(s) 81, 458, 460
ClaI ATCGAT 1 cut(s) 1398
CseI GACGC 2 cut(s) 176, 780
Csp6I GTAC 5 cut(s) 394, 538, 1179, 1869, 1888
CviAII CATG 6 cut(s) 63, 721, 1463, 1621, 1732, 2333
CviQI GTAC 5 cut(s) 394, 538, 1179, 1869, 1888
DdeI CTNAG 5 cut(s) 359, 581, 1486, 1608, 1789
DpnI GATC 6 cut(s) 452, 822, 1397, 1553, 2193, 2217
DpnII GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
EaeI YGGCCR 1 cut(s) 2062
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 2 cut(s) 133, 203
Eco32I GATATC 2 cut(s) 756, 1704
Eco57I CTGAAG 1 cut(s) 1963
EcoRI GAATTC 1 cut(s) 1492
EcoRII CCWGG 3 cut(s) 492, 1506, 1782
EcoRV GATATC 2 cut(s) 756, 1704
EcoT22I ATGCAT 1 cut(s) 816
FaeI CATG 6 cut(s) 66, 724, 1466, 1624, 1735, 2336
FalI AAGNNNNNCTT 6 cut(s) 989, 1021, 1244, 1276, 2060, 2092
FaqI GGGAC 1 cut(s) 1838
FatI CATG 6 cut(s) 62, 720, 1462, 1620, 1731, 2332
FauI CCCGC 2 cut(s) 137, 554
FauNDI CATATG 1 cut(s) 816
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 6 cut(s) 836, 839, 1292, 1340, 1473, 1946
FokI GGATG 9 cut(s) 119, 718, 743, 907, 1117, 1465, 1844, 2243, 2272
Fsp4HI GCNGC 6 cut(s) 836, 839, 1292, 1340, 1473, 1946
FspBI CTAG 1 cut(s) 795
GlaI GCGC 3 cut(s) 80, 457, 459
GluI GCNGC 6 cut(s) 836, 839, 1292, 1340, 1473, 1946
GsaI CCCAGC 3 cut(s) 579, 1593, 2530
GsuI CTGGAG 2 cut(s) 332, 2130
HaeIII GGCC 3 cut(s) 686, 1506, 2064
HapII CCGG 3 cut(s) 414, 728, 2560
HgaI GACGC 2 cut(s) 176, 780
HhaI GCGC 3 cut(s) 81, 458, 460
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 66, 724, 1466, 1624, 1735, 2336
Hin6I GCGC 3 cut(s) 79, 456, 458
HinP1I GCGC 3 cut(s) 79, 456, 458
HindIII AAGCTT 1 cut(s) 1995
HpaII CCGG 3 cut(s) 414, 728, 2560
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 5 cut(s) 435, 1458, 1691, 2401, 2470
Hpy188I TCNGA 9 cut(s) 296, 450, 867, 1026, 1137, 1324, 1764, 1982, 2377
Hpy188III TCNNGA 8 cut(s) 728, 785, 795, 991, 1393, 1544, 1859, 2576
Hpy8I GTNNAC 5 cut(s) 435, 1458, 1691, 2401, 2470
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 6 cut(s) 470, 1168, 1178, 1298, 1378, 1892
HpyCH4IV ACGT 3 cut(s) 381, 431, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 462, 567, 1755
HpyF3I CTNAG 5 cut(s) 359, 581, 1486, 1608, 1789
HpySE526I ACGT 3 cut(s) 381, 431, 857
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 66, 724, 1466, 1624, 1735, 2336
HspAI GCGC 3 cut(s) 79, 456, 458
Kpn2I TCCGGA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
LmnI GCTCC 2 cut(s) 116, 1113
Lsp1109I GCAGC 4 cut(s) 822, 1278, 1326, 1932
LweI GCATC 9 cut(s) 141, 475, 696, 1095, 1105, 1909, 2221, 2294, 2381
MaeI CTAG 1 cut(s) 795
MaeII ACGT 3 cut(s) 381, 431, 857
MaeIII GTNAC 7 cut(s) 252, 512, 853, 870, 1168, 1378, 2100
MalI GATC 6 cut(s) 452, 822, 1397, 1553, 2193, 2217
MbiI CCGCTC 2 cut(s) 111, 356
MboI GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
MfeI CAATTG 1 cut(s) 1434
MflI RGATCY 1 cut(s) 2191
MhlI GDGCHC 1 cut(s) 624
MlsI TGGCCA 1 cut(s) 2064
MluNI TGGCCA 1 cut(s) 2064
MlyI GAGTC 4 cut(s) 1453, 1860, 1920, 2031
MmeI TCCRAC 1 cut(s) 576
Mox20I TGGCCA 1 cut(s) 2064
Mph1103I ATGCAT 1 cut(s) 816
MroI TCCGGA 1 cut(s) 727
MroXI GAANNNNTTC 2 cut(s) 1259, 1616
MscI TGGCCA 1 cut(s) 2064
MseI TTAA 9 cut(s) 285, 420, 441, 951, 1988, 1992, 2051, 2094, 2508
MslI CAYNNNNRTG 2 cut(s) 1467, 1625
Msp20I TGGCCA 1 cut(s) 2064
MspCI CTTAAG 1 cut(s) 2507
MspI CCGG 3 cut(s) 414, 728, 2560
MspR9I CCNGG 5 cut(s) 415, 494, 1508, 1784, 2560
MunI CAATTG 1 cut(s) 1434
Mva1269I GAATGC 3 cut(s) 81, 1758, 2241
MvaI CCWGG 3 cut(s) 494, 1508, 1784
MvnI CGCG 2 cut(s) 458, 561
MwoI GCNNNNNNNGC 3 cut(s) 462, 567, 1755
NciI CCSGG 2 cut(s) 415, 2560
NdeI CATATG 1 cut(s) 816
NdeII GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
NlaIII CATG 6 cut(s) 66, 724, 1466, 1624, 1735, 2336
NlaIV GGNNCC 1 cut(s) 68
NmeAIII GCCGAG 1 cut(s) 712
NmuCI GTSAC 3 cut(s) 252, 512, 1378
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 1 cut(s) 724
PacI TTAATTAA 1 cut(s) 1992
PauI GCGCGC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 3 cut(s) 81, 1758, 2241
PdmI GAANNNNTTC 2 cut(s) 1259, 1616
PfeI GAWTC 6 cut(s) 240, 781, 1652, 2279, 2490, 2539
PkrI GCNGC 6 cut(s) 837, 840, 1293, 1341, 1474, 1947
PleI GAGTC 4 cut(s) 1453, 1859, 1919, 2030
PpsI GAGTC 4 cut(s) 1453, 1859, 1919, 2030
Ppu21I YACGTR 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 471
PshBI ATTAAT 2 cut(s) 951, 1988
PsiI TTATAA 1 cut(s) 1770
Psp6I CCWGG 3 cut(s) 492, 1506, 1782
PspFI CCCAGC 3 cut(s) 575, 1589, 2526
PspGI CCWGG 3 cut(s) 492, 1506, 1782
PspN4I GGNNCC 1 cut(s) 68
PsrI GAACNNNNNNTAC 2 cut(s) 2168, 2200
PstNI CAGNNNCTG 1 cut(s) 1166
PsuI RGATCY 1 cut(s) 2191
PteI GCGCGC 1 cut(s) 456
RsaI GTAC 5 cut(s) 395, 539, 1180, 1870, 1889
RsaNI GTAC 5 cut(s) 394, 538, 1179, 1869, 1888
RseI CAYNNNNRTG 2 cut(s) 1467, 1625
SaqAI TTAA 9 cut(s) 285, 420, 441, 951, 1988, 1992, 2051, 2094, 2508
SatI GCNGC 6 cut(s) 836, 839, 1292, 1340, 1473, 1946
Sau3AI GATC 6 cut(s) 450, 820, 1395, 1551, 2191, 2215
ScaI AGTACT 1 cut(s) 1180
SchI GAGTC 4 cut(s) 1453, 1860, 1920, 2031
ScrFI CCNGG 5 cut(s) 415, 494, 1508, 1784, 2560
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 9 cut(s) 141, 475, 696, 1095, 1105, 1909, 2221, 2294, 2381
SfcI CTRYAG 3 cut(s) 1174, 2130, 2236
SmiMI CAYNNNNRTG 2 cut(s) 1467, 1625
SmlI CTYRAG 1 cut(s) 2507
SmoI CTYRAG 1 cut(s) 2507
SsiI CCGC 8 cut(s) 109, 130, 144, 214, 354, 561, 839, 1472
SspI AATATT 5 cut(s) 801, 1153, 1809, 1969, 1986
SspMI CTAG 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 413, 492, 1506, 1782, 2558
TaaI ACNGT 6 cut(s) 470, 1168, 1178, 1298, 1378, 1892
TaiI ACGT 3 cut(s) 384, 434, 860
TaqI TCGA 7 cut(s) 165, 501, 653, 749, 1015, 1398, 2533
TatI WGTACW 5 cut(s) 393, 537, 1178, 1868, 1887
TauI GCSGC 2 cut(s) 841, 1475
TfiI GAWTC 6 cut(s) 240, 781, 1652, 2279, 2490, 2539
Tru1I TTAA 9 cut(s) 285, 420, 441, 951, 1988, 1992, 2051, 2094, 2508
Tru9I TTAA 9 cut(s) 285, 420, 441, 951, 1988, 1992, 2051, 2094, 2508
TscAI CASTG 2 cut(s) 1662, 2491
TseFI GTSAC 3 cut(s) 252, 512, 1378
TseI GCWGC 4 cut(s) 835, 1291, 1339, 1945
Tsp45I GTSAC 3 cut(s) 252, 512, 1378
TspDTI ATGAA 9 cut(s) 1364, 1609, 1617, 1848, 1853, 1953, 2273, 2358, 2583
TspGWI ACGGA 3 cut(s) 944, 1100, 1206
TspRI CASTG 2 cut(s) 1662, 2491
Vha464I CTTAAG 1 cut(s) 2507
VspI ATTAAT 2 cut(s) 951, 1988
XapI RAATTY 2 cut(s) 1492, 2570
XbaI TCTAGA 1 cut(s) 794
XceI RCATGY 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 2 cut(s) 1259, 1616
XspI CTAG 1 cut(s) 795
ZrmI AGTACT 1 cut(s) 1180
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.