Rmu_co8074688.1_g000001

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8074688.1
OG0006062
Physical Location & Seq
Reverse (-)
84 .. 398
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8074688.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
ctgcatttgagggcagaatcgagcgatgatcgacttgcttgggtggaagcattgcaggccgtgaaagacatgtttccgcggatttccaacagtgaattgatggctccggtagacaatgtagcggtgtctactgagaaattgaggcagcgcctggtcgaagaaggtgttagggaggcagccattcaggaaagtgaacagattatgaagacagagtttgctgcattgcataaccagcttcttctgctcaagcagaaacagtggctcctaattgacacactacgacagttagaggtatggaaacattacgtcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

104

Amino Acids

12.09

Weight (kDa)

5.59

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 111, 128
AccII CGCG 1 cut(s) 79
AciI CCGC 3 cut(s) 77, 79, 122
AflIII ACRYGT 1 cut(s) 69
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 145, 176, 218
AspLEI GCGC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 157, 188, 205
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 151
BisI GCNGC 3 cut(s) 146, 177, 219
BlsI GCNGC 3 cut(s) 147, 178, 220
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 105, 263
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse3DI GCAATG 2 cut(s) 50, 221
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 50, 221
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 157, 188, 205
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 3 cut(s) 77, 79, 122
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 105, 263
BsrDI GCAATG 2 cut(s) 50, 221
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 92, 258, 285
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 56, 232, 241
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 157, 188, 205
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 97, 263
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 80
CviAII CATG 1 cut(s) 70
CviJI RGCY 5 cut(s) 59, 104, 179, 235, 262
CviKI_1 RGCY 5 cut(s) 59, 104, 179, 235, 262
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 73
FaiI YATR 4 cut(s) 71, 203, 228, 295
FatI CATG 1 cut(s) 69
FblI GTMKAC 2 cut(s) 111, 128
Fnu4HI GCNGC 3 cut(s) 146, 177, 219
Fsp4HI GCNGC 3 cut(s) 146, 177, 219
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 146, 177, 219
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 112, 129, 194
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 3 cut(s) 112, 129, 194
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 92, 258, 285
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 4, 55, 221, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 232, 241
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 148
KspI CCGCGG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 109, 267
LpnPI CCDG 6 cut(s) 41, 120, 137, 164, 170, 245
Lsp1109I GCAGC 3 cut(s) 157, 188, 205
MaeII ACGT 1 cut(s) 306
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 170, 217, 230
MluCI AATT 3 cut(s) 95, 137, 267
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 4 cut(s) 3, 135, 166, 283
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 56, 232, 241
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 105, 263
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 147, 178, 220
PscI ACATGT 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 105, 263
PstNI CAGNNNCTG 1 cut(s) 151
SacII CCGCGG 1 cut(s) 80
SatI GCNGC 3 cut(s) 146, 177, 219
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 166, 237, 294, 309
Sfr303I CCGCGG 1 cut(s) 80
SgrBI CCGCGG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 95, 137, 267
SsiI CCGC 3 cut(s) 77, 79, 122
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 92, 258, 285
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 20, 31, 156
TasI AATT 3 cut(s) 95, 137, 267
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 2 cut(s) 97, 263
TseI GCWGC 3 cut(s) 145, 176, 218
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 2 cut(s) 97, 263
XceI RCATGY 1 cut(s) 73
XmiI GTMKAC 2 cut(s) 111, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.