AT1G79440

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29882121 .. 29887414
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79440.1

Sequence Viewer

Length: 1587 bp
ATGGTAATAGGAGCAGCAGCGCGTGTAGCCATCGGCGGTTGTCGAAAGCTCATCTCGTCACATACCTCCCTCCTCCTCGTCTCTTCTCAGTGTCGCCAGATGAGTATGGACGCACAAAGCGTTTCTGAAAAGCTTAGGAGTTCTGGTCTATTACGAACTCAAGGTCTAATTGGAGGCAAGTGGCTTGACTCGTATGACAATAAGACAATCAAGGTTAACAATCCAGCAACCGGTGAAATTATAGCTGATGTTGCATGTATGGGAACAAAAGAGACAAATGATGCTATTGCTTCTTCTTATGAAGCATTTACTTCTTGGAGCAGATTGACTGCTGGAGAGAGGAGTAAAGTTTTACGGAGATGGTATGACCTCCTGATTGCACACAAGGAAGAACTTGGACAACTTATAACTTTGGAGCAAGGAAAACCACTCAAGGAAGCCATCGGAGAGGTAGCATATGGGGCAAGTTTTATTGAGTACTATGCGGAGGAGGCAAAACGTGTATATGGTGATATAATTCCTCCGAATCTGTCTGATCGCCGACTGTTGGTTCTAAAACAGCCTGTCGGTGTTGTTGGTGCAATTACCCCTTGGAACTTCCCCTTAGCCATGATTACTCGGAAGGTCGGCCCTGCTCTTGCTTCTGGATGCACGGTGGTTGTTAAACCATCTGAACTTACGCCCCTAACAGCACTTGCTGCGGCTGAACTTGCACTTCAAGCTGGAGTTCCTCCGGGGGCACTTAATGTGGTCATGGGAAATGCTCCTGAAATTGGGGATGCTTTGCTTACGAGTCCACAGGTGAGAAAAATCACGTTCACGGGATCAACAGCAGTTGGGAAGAAGTTGATGGCAGCTGCTGCACCTACCGTCAAGAAGGTTTCTCTAGAACTTGGCGGCAACGCACCCTCTATAGTATTTGATGATGCAGACCTGGATGTAGCTGTAAAAGGAACGCTTGCAGCGAAATTTAGGAATAGTGGTCAGACATGTGTTTGTGCGAACAGAGTACTTGTGCAAGATGGTATCTATGATAAATTTGCTGAGGCCTTTTCTGAAGCGGTTCAAAAATTAGAAGTAGGAGATGGGTTTAGGGATGGGACAACCCAGGGTCCACTTATAAATGATGCAGCAGTGCAAAAGGTAGAGACATTTGTACAAGATGCTGTTTCTAAGGGAGCAAAAATCATCATTGGTGGCAAAAGGCACAGTCTAGGGATGACTTTCTATGAGCCTACTGTTATCCGCGATGTTTCGGATAACATGATCATGTCTAAGGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACCGAGGAGGACGCTATCAGAATTGCTAATGACACAATTGCAGGACTTGCTGCTTATATATTCACAAACAGTGTCCAAAGATCTTGGCGTGTATTTGAAGCACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAGGTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGTCTTGGAAGGGAAGGATCCAAGTATGGTATGGACGAATACCTTGAGATCAAATACGTATGCTTGGGAGATATGAATAGACACTGA

Protein Analysis

528

Amino Acids

56.56

Weight (kDa)

6.51

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 61 - 520 1.4e-172 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 407, 1121
AccII CGCG 2 cut(s) 22, 1248
AciI CCGC 6 cut(s) 36, 485, 701, 897, 1061, 1246
AclWI GGATC 3 cut(s) 832, 1512, 1525
AcsI RAATTY 2 cut(s) 968, 1037
AcuI CTGAAG 1 cut(s) 1077
AfaI GTAC 3 cut(s) 479, 1011, 1158
AfiI CCNNNNNNNGG 5 cut(s) 230, 547, 773, 1311, 1484
AflIII ACRYGT 2 cut(s) 499, 989
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 5 cut(s) 719, 1067, 1318, 1418, 1427
AjnI CCWGG 2 cut(s) 933, 1107
AluBI AGCT 7 cut(s) 49, 133, 245, 722, 857, 944, 1301
AluI AGCT 7 cut(s) 49, 133, 245, 722, 857, 944, 1301
Alw26I GTCTC 3 cut(s) 85, 266, 1142
AlwI GGATC 3 cut(s) 832, 1512, 1525
AlwNI CAGNNNCTG 1 cut(s) 860
AoxI GGCC 2 cut(s) 628, 1047
ApeKI GCWGC 9 cut(s) 14, 17, 698, 854, 857, 860, 962, 1130, 1370
ApoI RAATTY 2 cut(s) 968, 1037
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AsiGI ACCGGT 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 629, 1112, 1292
AsuC2I CCSGG 1 cut(s) 735
AsuHPI GGTGA 4 cut(s) 245, 521, 814, 1456
AvaII GGWCC 2 cut(s) 1112, 1292
BaeGI GKGCMC 1 cut(s) 742
BamHI GGATCC 1 cut(s) 1517
BbvCI CCTCAGC 1 cut(s) 1044
BbvI GCAGC 9 cut(s) 26, 29, 685, 844, 847, 866, 974, 1142, 1357
BccI CCATC 8 cut(s) 38, 354, 449, 676, 844, 1016, 1079, 1091
BciT130I CCWGG 2 cut(s) 935, 1109
BclI TGATCA 1 cut(s) 1266
BcnI CCSGG 1 cut(s) 735
BcoDI GTCTC 3 cut(s) 85, 266, 1142
BfaI CTAG 2 cut(s) 887, 1214
BfmI CTRYAG 2 cut(s) 912, 1296
BglII AGATCT 1 cut(s) 1400
BmcAI AGTACT 2 cut(s) 479, 1011
Bme1390I CCNGG 3 cut(s) 735, 935, 1109
Bme18I GGWCC 2 cut(s) 1112, 1292
BmgT120I GGNCC 3 cut(s) 629, 1112, 1292
BmiI GGNNCC 3 cut(s) 1113, 1476, 1519
BmrFI CCNGG 3 cut(s) 735, 935, 1109
BmsI GCATC 6 cut(s) 271, 638, 769, 916, 1117, 1153
BpmI CTGGAG 2 cut(s) 354, 744
Bpu10I CCTNAGC 3 cut(s) 134, 604, 1044
BpuEI CTTGAG 3 cut(s) 144, 416, 1565
BpuMI CCSGG 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 1558
BsaJI CCNNGG 5 cut(s) 590, 734, 1107, 1108, 1323
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 547, 773, 1311, 1484
Bse118I RCCGGY 1 cut(s) 230
BseBI CCWGG 2 cut(s) 935, 1109
BseDI CCNNGG 5 cut(s) 590, 734, 1107, 1108, 1323
BseGI GGATG 5 cut(s) 653, 784, 943, 1102, 1224
BseLI CCNNNNNNNGG 5 cut(s) 230, 547, 773, 1311, 1484
BseMII CTCAG 2 cut(s) 101, 1035
BseRI GAGGAG 6 cut(s) 62, 65, 355, 503, 1295, 1340
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 9 cut(s) 26, 29, 685, 844, 847, 866, 974, 1142, 1357
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 22, 1248
BshFI GGCC 2 cut(s) 630, 1049
BshTI ACCGGT 1 cut(s) 230
BsiSI CCGG 2 cut(s) 231, 734
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 5 cut(s) 230, 547, 773, 1311, 1484
BsmAI GTCTC 3 cut(s) 85, 266, 1142
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 630, 1049
Bsp1286I GDGCHC 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
BspACI CCGC 6 cut(s) 36, 485, 701, 897, 1061, 1246
BspANI GGCC 2 cut(s) 630, 1049
BspCNI CTCAG 2 cut(s) 100, 1036
BspFNI CGCG 2 cut(s) 22, 1248
BspLI GGNNCC 3 cut(s) 1113, 1476, 1519
BspPI GGATC 3 cut(s) 832, 1512, 1525
BsrFI RCCGGY 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 1156
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 5 cut(s) 590, 734, 1107, 1108, 1323
BssMI GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
BssT1I CCWWGG 1 cut(s) 590
Bst2UI CCWGG 2 cut(s) 935, 1109
Bst4CI ACNGT 6 cut(s) 546, 655, 871, 1211, 1240, 1391
Bst6I CTCTTC 1 cut(s) 88
BstAPI GCANNNNNTGC 3 cut(s) 698, 860, 1367
BstAUI TGTACA 1 cut(s) 1156
BstBAI YACGTR 1 cut(s) 1558
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 6 cut(s) 87, 134, 604, 1044, 1173, 1275
BstF5I GGATG 5 cut(s) 653, 784, 943, 1102, 1224
BstFNI CGCG 2 cut(s) 22, 1248
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 6 cut(s) 538, 827, 1269, 1403, 1520, 1551
BstMAI GTCTC 3 cut(s) 85, 266, 1142
BstMBI GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
BstMWI GCNNNNNNNGC 9 cut(s) 26, 251, 461, 491, 698, 710, 719, 860, 1367
BstNI CCWGG 2 cut(s) 935, 1109
BstNSI RCATGY 2 cut(s) 258, 993
BstSCI CCNGG 3 cut(s) 733, 933, 1107
BstSFI CTRYAG 2 cut(s) 912, 1296
BstSLI GKGCMC 1 cut(s) 742
BstSNI TACGTA 1 cut(s) 1558
BstUI CGCG 2 cut(s) 22, 1248
BstV1I GCAGC 9 cut(s) 26, 29, 685, 844, 847, 866, 974, 1142, 1357
BstX2I RGATCY 2 cut(s) 1400, 1517
BstYI RGATCY 2 cut(s) 1400, 1517
BsuRI GGCC 2 cut(s) 630, 1049
BtgZI GCGATG 1 cut(s) 1263
BtsCI GGATG 5 cut(s) 653, 784, 943, 1102, 1224
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 4 cut(s) 95, 1140, 1396, 1582
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 629, 1112, 1292
CseI GACGC 2 cut(s) 119, 1340
Csp6I GTAC 3 cut(s) 478, 1010, 1157
CspAI ACCGGT 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 1452, 1487
CviAII CATG 6 cut(s) 255, 610, 754, 990, 1264, 1270
CviQI GTAC 3 cut(s) 478, 1010, 1157
DdeI CTNAG 6 cut(s) 87, 134, 604, 1044, 1173, 1275
DpnI GATC 6 cut(s) 537, 826, 1268, 1402, 1519, 1550
DpnII GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco105I TACGTA 1 cut(s) 1558
Eco130I CCWWGG 1 cut(s) 590
Eco147I AGGCCT 1 cut(s) 1049
Eco47I GGWCC 2 cut(s) 1112, 1292
Eco57I CTGAAG 1 cut(s) 1077
EcoRII CCWGG 2 cut(s) 933, 1107
EcoT14I CCWWGG 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 6 cut(s) 258, 613, 757, 993, 1267, 1273
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 1114
FatI CATG 6 cut(s) 254, 609, 753, 989, 1263, 1269
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 1266
FokI GGATG 5 cut(s) 660, 791, 950, 1109, 1231
FspBI CTAG 2 cut(s) 887, 1214
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 354, 744
HaeIII GGCC 2 cut(s) 630, 1049
HapII CCGG 2 cut(s) 231, 734
HgaI GACGC 2 cut(s) 119, 1340
HhaI GCGC 1 cut(s) 22
Hin1II CATG 6 cut(s) 258, 613, 757, 993, 1267, 1273
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 188, 526, 793, 1455
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 2 cut(s) 231, 734
HphI GGTGA 4 cut(s) 245, 521, 814, 1456
Hpy166II GTNNAC 5 cut(s) 217, 797, 819, 1115, 1447
Hpy188III TCNNGA 5 cut(s) 373, 645, 767, 874, 887
Hpy8I GTNNAC 5 cut(s) 217, 797, 819, 1115, 1447
HpyAV CCTTC 5 cut(s) 616, 871, 1445, 1503, 1508
HpyCH4III ACNGT 6 cut(s) 546, 655, 871, 1211, 1240, 1391
HpyCH4IV ACGT 3 cut(s) 499, 815, 1557
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 251, 461, 491, 698, 710, 719, 860, 1367
HpyF3I CTNAG 6 cut(s) 87, 134, 604, 1044, 1173, 1275
HpySE526I ACGT 3 cut(s) 499, 815, 1557
Hsp92II CATG 6 cut(s) 258, 613, 757, 993, 1267, 1273
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 1266
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
LmnI GCTCC 7 cut(s) 11, 318, 415, 769, 1178, 1306, 1480
Lsp1109I GCAGC 9 cut(s) 26, 29, 685, 844, 847, 866, 974, 1142, 1357
LweI GCATC 6 cut(s) 271, 638, 769, 916, 1117, 1153
MaeI CTAG 2 cut(s) 887, 1214
MaeII ACGT 3 cut(s) 499, 815, 1557
MaeIII GTNAC 1 cut(s) 57
MalI GATC 6 cut(s) 537, 826, 1268, 1402, 1519, 1550
MboI GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
MboII GAAGA 4 cut(s) 75, 285, 401, 853
MfeI CAATTG 1 cut(s) 1356
MflI RGATCY 2 cut(s) 1400, 1517
MhlI GDGCHC 1 cut(s) 742
MlyI GAGTC 3 cut(s) 182, 802, 1449
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 3 cut(s) 216, 663, 744
MslI CAYNNNNRTG 1 cut(s) 1268
MspA1I CMGCKG 1 cut(s) 857
MspI CCGG 2 cut(s) 231, 734
MspR9I CCNGG 3 cut(s) 735, 935, 1109
MunI CAATTG 1 cut(s) 1356
MvaI CCWGG 2 cut(s) 935, 1109
MvnI CGCG 2 cut(s) 22, 1248
MwoI GCNNNNNNNGC 9 cut(s) 26, 251, 461, 491, 698, 710, 719, 860, 1367
NciI CCSGG 1 cut(s) 735
NdeI CATATG 1 cut(s) 457
NdeII GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
NlaIII CATG 6 cut(s) 258, 613, 757, 993, 1267, 1273
NlaIV GGNNCC 3 cut(s) 1113, 1476, 1519
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 2 cut(s) 258, 993
PasI CCCWGGG 1 cut(s) 1108
PceI AGGCCT 1 cut(s) 1049
PciI ACATGT 1 cut(s) 989
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 962
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 1 cut(s) 526
PinAI ACCGGT 1 cut(s) 230
PleI GAGTC 3 cut(s) 182, 801, 1449
PpsI GAGTC 3 cut(s) 182, 801, 1449
Ppu21I YACGTR 1 cut(s) 1558
PscI ACATGT 1 cut(s) 989
PsiI TTATAA 2 cut(s) 407, 1121
Psp6I CCWGG 2 cut(s) 933, 1107
PspGI CCWGG 2 cut(s) 933, 1107
PspN4I GGNNCC 3 cut(s) 1113, 1476, 1519
PspPI GGNCC 3 cut(s) 629, 1112, 1292
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 2 cut(s) 1400, 1517
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 3 cut(s) 479, 1011, 1158
RsaNI GTAC 3 cut(s) 478, 1010, 1157
RseI CAYNNNNRTG 1 cut(s) 1268
SaqAI TTAA 3 cut(s) 216, 663, 744
Sau3AI GATC 6 cut(s) 535, 824, 1266, 1400, 1517, 1548
Sau96I GGNCC 3 cut(s) 629, 1112, 1292
ScaI AGTACT 2 cut(s) 479, 1011
SchI GAGTC 3 cut(s) 182, 802, 1449
ScrFI CCNGG 3 cut(s) 735, 935, 1109
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 6 cut(s) 271, 638, 769, 916, 1117, 1153
SfcI CTRYAG 2 cut(s) 912, 1296
SinI GGWCC 2 cut(s) 1112, 1292
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 3 cut(s) 159, 431, 1544
SmoI CTYRAG 3 cut(s) 159, 431, 1544
SnaBI TACGTA 1 cut(s) 1558
SseBI AGGCCT 1 cut(s) 1049
SsiI CCGC 6 cut(s) 36, 485, 701, 897, 1061, 1246
SspMI CTAG 2 cut(s) 887, 1214
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 3 cut(s) 733, 933, 1107
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 6 cut(s) 546, 655, 871, 1211, 1240, 1391
TaiI ACGT 3 cut(s) 502, 818, 1560
TaqI TCGA 1 cut(s) 43
TatI WGTACW 3 cut(s) 477, 1009, 1156
TauI GCSGC 2 cut(s) 704, 900
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 3 cut(s) 216, 663, 744
Tru9I TTAA 3 cut(s) 216, 663, 744
TscAI CASTG 3 cut(s) 95, 1140, 1396
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 9 cut(s) 14, 17, 698, 854, 857, 860, 962, 1130, 1370
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 3 cut(s) 95, 1140, 1396
VpaK11BI GGWCC 2 cut(s) 1112, 1292
XapI RAATTY 2 cut(s) 968, 1037
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 2 cut(s) 258, 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 1528
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 2 cut(s) 887, 1214
ZrmI AGTACT 2 cut(s) 479, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.