Rmu_sc0023767.1_g000001

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023767.1
Physical Location & Seq
Forward (+)
808 .. 7355
6548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023767.1_g000001.1.cds

Sequence Viewer

Length: 1482 bp
atggacgcaaaaggctttgcttctcggcttgttgatgctggtctattacgtagtcaggcccttattggagggaaatggtctgatgcatatgacgggaacactataaaggttcacaacccagcaactggtgatgtcataacaaccgtcccatgcatgggtcaaaatgagacgaatgatgcaatatctgctgcctccgaggcattcagttcctggagcaaggtcactaatgtggaaaggagcaaatgtttaaggaaatggtacgatctactaatttcccacaaagaagaacttggacaactcattaccctggagcaagggaaacctttacaagaagccatgggtgaggtgacctatggagctgcctttattgagttctttgctgaagaggcaaaacgcgtatatggtgatataattccatcgcctctggctgatcgacggatgcttgttttaaagcagcctgtaggtgttgttggtgcaatcactccctggaacttcccattggctatgattacgcgcaaggttggtcctgctcttgcatgtggctgtacggtggtcattaaaccctctgaacttacacccctcacagccttagcagcagctgagcttgccctgcaagctggaataccgccgggtgtgatgaatgtggtaatgggaaatgcttctgcaattggggacgctttacttgcaagtccgcaggtaagaaaaatcactttcacaggctcaacagcagttggaaagaagttgatggctggtgcagctgggactgttaagaaggtatctcttgaacttggtggcaatgcaccctgcatagtctttgatgatgcagacctggatgtggcagtaaaaggaactcttggagcaaagttccgtaatactggacagacatgtgtttgtgctaataggattttggtacaagaaggtatctatgagaaatttgtggatgcttttacgaaagctgtccagaagctccaagttgggcatggctttagtgaaggagtggcccagggtcctttaatcaatgaagcagcagtacaaaaggtcgagtcatttgtcaaagatgctacatcaaagggagcaaaagttgttcttggagccaaaaggcatagccttggagggaccttttatgagcctacagttctcagtgatgtcaagagtaatatgattatagcaagagatgaagtatttggaccagtcgcacctgttttgcgtttcaaaactgaggatgaagctctctgcatggccaatgataccaatgcagggttagctgcttatgtatttacaaataatgtacaacgatcatggcgtgttgctgaagctcttgaatatggacttgttggtgtcaatgaagggttaatttcaacagaggtggctccttttggaggtgtcaagcagtctggtcttggacgagaaggttccaagtatggaatggatgaatatttggaagttaaatacgtgtgcctgggaaatatgagcagcaagtga

Protein Analysis

493

Amino Acids

52.26

Weight (kDa)

6.5

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 2 cut(s) 396, 514
AciI CCGC 2 cut(s) 626, 692
AcoI YGGCCR 1 cut(s) 1239
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 2 cut(s) 402, 1332
AfaI GTAC 5 cut(s) 260, 547, 912, 1032, 1290
AfiI CCNNNNNNNGG 6 cut(s) 125, 154, 155, 835, 1257, 1379
AflIII ACRYGT 3 cut(s) 394, 884, 1452
AgsI TTSAA 4 cut(s) 785, 1213, 1322, 1359
AjnI CCWGG 6 cut(s) 209, 306, 485, 828, 1002, 1458
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AleI CACNNNNGTG 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 3 cut(s) 125, 210, 599
AoxI GGCC 3 cut(s) 57, 999, 1239
ApeKI GCWGC 9 cut(s) 188, 359, 454, 593, 596, 755, 1025, 1265, 1473
ApoI RAATTY 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 658
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 6 cut(s) 58, 524, 1000, 1007, 1116, 1187
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 4 cut(s) 140, 353, 358, 416
AvaII GGWCC 4 cut(s) 524, 1007, 1116, 1187
BalI TGGCCA 1 cut(s) 1241
BarI GAAGNNNNNNTAC 2 cut(s) 1014, 1046
BbvI GCAGC 8 cut(s) 175, 346, 466, 605, 608, 767, 1037, 1252
BccI CCATC 2 cut(s) 424, 739
BciT130I CCWGG 6 cut(s) 211, 308, 487, 830, 1004, 1460
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 2 cut(s) 459, 1131
BfuAI ACCTGC 1 cut(s) 685
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 9 cut(s) 189, 360, 455, 594, 597, 756, 1026, 1266, 1474
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 9 cut(s) 190, 361, 456, 595, 598, 757, 1027, 1267, 1475
Bme1390I CCNGG 7 cut(s) 211, 308, 487, 630, 830, 1004, 1460
Bme18I GGWCC 4 cut(s) 524, 1007, 1116, 1187
BmgT120I GGNCC 6 cut(s) 58, 524, 1000, 1007, 1116, 1187
BmiI GGNNCC 5 cut(s) 1008, 1093, 1117, 1371, 1414
BmrFI CCNGG 7 cut(s) 211, 308, 487, 630, 830, 1004, 1460
BmsI GCATC 7 cut(s) 25, 73, 166, 429, 811, 931, 1048
BpmI CTGGAG 2 cut(s) 232, 329
Bpu10I CCTNAGC 1 cut(s) 589
Bpu1102I GCTNAGC 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 630
BsaAI YACGTR 2 cut(s) 50, 1453
BsaJI CCNNGG 8 cut(s) 195, 306, 336, 485, 1002, 1003, 1108, 1459
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 1065, 1095
Bsc4I CCNNNNNNNGG 6 cut(s) 125, 154, 155, 835, 1257, 1379
Bse1I ACTGG 3 cut(s) 130, 880, 1190
Bse3DI GCAATG 1 cut(s) 802
BseBI CCWGG 6 cut(s) 211, 308, 487, 830, 1004, 1460
BseDI CCNNGG 8 cut(s) 195, 306, 336, 485, 1002, 1003, 1108, 1459
BseGI GGATG 5 cut(s) 444, 838, 946, 1228, 1435
BseLI CCNNNNNNNGG 6 cut(s) 125, 154, 155, 835, 1257, 1379
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 591, 1153, 1209
BseNI ACTGG 3 cut(s) 130, 880, 1190
BseXI GCAGC 8 cut(s) 175, 346, 466, 605, 608, 767, 1037, 1252
BseYI CCCAGC 2 cut(s) 118, 758
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 2 cut(s) 396, 514
BshFI GGCC 3 cut(s) 59, 1001, 1241
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 4 cut(s) 131, 686, 775, 1129
BslI CCNNNNNNNGG 6 cut(s) 125, 154, 155, 835, 1257, 1379
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 4 cut(s) 131, 686, 775, 1129
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 3 cut(s) 59, 1001, 1241
Bsp1407I TGTACA 1 cut(s) 1288
Bsp143I GATC 3 cut(s) 262, 430, 1295
Bsp1720I GCTNAGC 1 cut(s) 600
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 2 cut(s) 626, 692
BspANI GGCC 3 cut(s) 59, 1001, 1241
BspCNI CTCAG 3 cut(s) 592, 1152, 1210
BspFNI CGCG 2 cut(s) 396, 514
BspLI GGNNCC 5 cut(s) 1008, 1093, 1117, 1371, 1414
BspMI ACCTGC 1 cut(s) 685
BsrDI GCAATG 1 cut(s) 802
BsrGI TGTACA 1 cut(s) 1288
BsrI ACTGG 3 cut(s) 130, 880, 1190
BssECI CCNNGG 8 cut(s) 195, 306, 336, 485, 1002, 1003, 1108, 1459
BssMI GATC 3 cut(s) 262, 430, 1295
BssT1I CCWWGG 2 cut(s) 336, 1108
Bst2UI CCWGG 6 cut(s) 211, 308, 487, 830, 1004, 1460
Bst4CI ACNGT 4 cut(s) 145, 550, 766, 1135
Bst6I CTCTTC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 1288
BstBAI YACGTR 2 cut(s) 50, 1453
BstC8I GCNNGC 2 cut(s) 606, 615
BstDEI CTNAG 4 cut(s) 589, 600, 1139, 1218
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 1377
BstF5I GGATG 5 cut(s) 444, 838, 946, 1228, 1435
BstFNI CGCG 2 cut(s) 396, 514
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 265, 433, 1298
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 262, 430, 1295
BstNI CCWGG 6 cut(s) 211, 308, 487, 830, 1004, 1460
BstNSI RCATGY 2 cut(s) 540, 888
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 7 cut(s) 209, 306, 485, 628, 828, 1002, 1458
BstSFI CTRYAG 2 cut(s) 459, 1131
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 2 cut(s) 396, 514
BstV1I GCAGC 8 cut(s) 175, 346, 466, 605, 608, 767, 1037, 1252
BsuRI GGCC 3 cut(s) 59, 1001, 1241
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 5 cut(s) 444, 838, 946, 1228, 1435
BtsIMutI CAGTG 1 cut(s) 1147
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 2 cut(s) 606, 615
CaiI CAGNNNCTG 3 cut(s) 125, 210, 599
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 6 cut(s) 58, 524, 1000, 1007, 1116, 1187
CseI GACGC 2 cut(s) 14, 683
Csp6I GTAC 5 cut(s) 259, 546, 911, 1031, 1289
CspCI CAANNNNNGTGG 2 cut(s) 1347, 1382
CviAII CATG 8 cut(s) 150, 154, 337, 537, 885, 980, 1237, 1299
CviQI GTAC 5 cut(s) 259, 546, 911, 1031, 1289
DdeI CTNAG 4 cut(s) 589, 600, 1139, 1218
DpnI GATC 3 cut(s) 264, 432, 1297
DpnII GATC 3 cut(s) 262, 430, 1295
DraI TTTAAA 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 1239
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 336, 1108
Eco47I GGWCC 4 cut(s) 524, 1007, 1116, 1187
Eco57I CTGAAG 2 cut(s) 402, 1332
Eco91I GGTNACC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 1377
EcoO109I RGGNCCY 3 cut(s) 58, 1007, 1116
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 6 cut(s) 209, 306, 485, 828, 1002, 1458
EcoT14I CCWWGG 2 cut(s) 336, 1108
EcoT22I ATGCAT 2 cut(s) 88, 155
ErhI CCWWGG 2 cut(s) 336, 1108
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 8 cut(s) 153, 157, 340, 540, 888, 983, 1240, 1302
FalI AAGNNNNNCTT 6 cut(s) 273, 305, 837, 869, 1071, 1103
FaqI GGGAC 4 cut(s) 131, 686, 775, 1129
FatI CATG 8 cut(s) 149, 153, 336, 536, 884, 979, 1236, 1298
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 9 cut(s) 189, 360, 455, 594, 597, 756, 1026, 1266, 1474
FokI GGATG 5 cut(s) 451, 845, 953, 1235, 1442
Fsp4HI GCNGC 9 cut(s) 189, 360, 455, 594, 597, 756, 1026, 1266, 1474
GlaI GCGC 1 cut(s) 515
GluI GCNGC 9 cut(s) 189, 360, 455, 594, 597, 756, 1026, 1266, 1474
GsaI CCCAGC 2 cut(s) 122, 762
GsuI CTGGAG 2 cut(s) 232, 329
HaeIII GGCC 3 cut(s) 59, 1001, 1241
HapII CCGG 1 cut(s) 629
HgaI GACGC 2 cut(s) 14, 683
HhaI GCGC 1 cut(s) 516
Hin1II CATG 8 cut(s) 153, 157, 340, 540, 888, 983, 1240, 1302
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 1 cut(s) 1043
HpaII CCGG 1 cut(s) 629
HphI GGTGA 4 cut(s) 140, 353, 358, 416
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 82, 196, 568
Hpy188III TCNNGA 4 cut(s) 782, 961, 1150, 1319
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 5 cut(s) 766, 911, 986, 1340, 1403
HpyCH4III ACNGT 4 cut(s) 145, 550, 766, 1135
HpyCH4IV ACGT 2 cut(s) 49, 1452
HpyF3I CTNAG 4 cut(s) 589, 600, 1139, 1218
HpySE526I ACGT 2 cut(s) 49, 1452
Hsp92II CATG 8 cut(s) 153, 157, 340, 540, 888, 983, 1240, 1302
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 262, 430, 1295
LmnI GCTCC 9 cut(s) 213, 237, 310, 356, 857, 972, 1073, 1091, 1375
Lsp1109I GCAGC 8 cut(s) 175, 346, 466, 605, 608, 767, 1037, 1252
LweI GCATC 7 cut(s) 25, 73, 166, 429, 811, 931, 1048
MaeII ACGT 2 cut(s) 49, 1452
MaeIII GTNAC 2 cut(s) 220, 346
MalI GATC 3 cut(s) 264, 432, 1297
MboI GATC 3 cut(s) 262, 430, 1295
MboII GAAGA 2 cut(s) 296, 395
MfeI CAATTG 1 cut(s) 666
MlsI TGGCCA 1 cut(s) 1241
MluCI AATT 5 cut(s) 270, 411, 666, 932, 1353
MluI ACGCGT 1 cut(s) 394
MluNI TGGCCA 1 cut(s) 1241
MlyI GAGTC 1 cut(s) 1052
MmeI TCCRAC 1 cut(s) 712
Mox20I TGGCCA 1 cut(s) 1241
Mph1103I ATGCAT 2 cut(s) 88, 155
MroXI GAANNNNTTC 1 cut(s) 658
MscI TGGCCA 1 cut(s) 1241
MseI TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 1241
MspA1I CMGCKG 2 cut(s) 599, 758
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 7 cut(s) 211, 308, 487, 630, 830, 1004, 1460
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 6 cut(s) 211, 308, 487, 830, 1004, 1460
MvnI CGCG 2 cut(s) 396, 514
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 88
NdeII GATC 3 cut(s) 262, 430, 1295
NlaIII CATG 8 cut(s) 153, 157, 340, 540, 888, 983, 1240, 1302
NlaIV GGNNCC 5 cut(s) 1008, 1093, 1117, 1371, 1414
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 2 cut(s) 220, 346
NsiI ATGCAT 2 cut(s) 88, 155
NspI RCATGY 2 cut(s) 540, 888
OliI CACNNNNGTG 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 1003
PciI ACATGT 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 1300
PctI GAATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 9 cut(s) 190, 361, 456, 595, 598, 757, 1027, 1267, 1475
PleI GAGTC 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1051
Ppu21I YACGTR 2 cut(s) 50, 1453
PpuMI RGGWCCY 2 cut(s) 1007, 1116
PscI ACATGT 1 cut(s) 884
Psp5II RGGWCCY 2 cut(s) 1007, 1116
Psp6I CCWGG 6 cut(s) 209, 306, 485, 828, 1002, 1458
PspEI GGTNACC 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 118, 758
PspGI CCWGG 6 cut(s) 209, 306, 485, 828, 1002, 1458
PspN4I GGNNCC 5 cut(s) 1008, 1093, 1117, 1371, 1414
PspPI GGNCC 6 cut(s) 58, 524, 1000, 1007, 1116, 1187
PspPPI RGGWCCY 2 cut(s) 1007, 1116
PstNI CAGNNNCTG 3 cut(s) 125, 210, 599
PvuII CAGCTG 2 cut(s) 599, 758
RsaI GTAC 5 cut(s) 260, 547, 912, 1032, 1290
RsaNI GTAC 5 cut(s) 259, 546, 911, 1031, 1289
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
SatI GCNGC 9 cut(s) 189, 360, 455, 594, 597, 756, 1026, 1266, 1474
Sau3AI GATC 3 cut(s) 262, 430, 1295
Sau96I GGNCC 6 cut(s) 58, 524, 1000, 1007, 1116, 1187
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 7 cut(s) 211, 308, 487, 630, 830, 1004, 1460
SfaNI GCATC 7 cut(s) 25, 73, 166, 429, 811, 931, 1048
SfcI CTRYAG 2 cut(s) 459, 1131
SinI GGWCC 4 cut(s) 524, 1007, 1116, 1187
SmiMI CAYNNNNRTG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 5 cut(s) 270, 411, 666, 932, 1353
SsiI CCGC 2 cut(s) 626, 692
SspI AATATT 1 cut(s) 1436
StyD4I CCNGG 7 cut(s) 209, 306, 485, 628, 828, 1002, 1458
StyI CCWWGG 2 cut(s) 336, 1108
TaaI ACNGT 4 cut(s) 145, 550, 766, 1135
TaiI ACGT 2 cut(s) 52, 1455
TaqI TCGA 2 cut(s) 433, 1041
TasI AATT 5 cut(s) 270, 411, 666, 932, 1353
TatI WGTACW 2 cut(s) 1030, 1288
Tru1I TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
Tru9I TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
TscAI CASTG 1 cut(s) 1147
TseFI GTSAC 2 cut(s) 220, 346
TseI GCWGC 9 cut(s) 188, 359, 454, 593, 596, 755, 1025, 1265, 1473
Tsp45I GTSAC 2 cut(s) 220, 346
TspDTI ATGAA 6 cut(s) 653, 1035, 1191, 1239, 1359, 1446
TspGWI ACGGA 2 cut(s) 451, 857
TspRI CASTG 1 cut(s) 1147
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 4 cut(s) 524, 1007, 1116, 1187
XagI CCTNNNNNAGG 1 cut(s) 1377
XapI RAATTY 1 cut(s) 932
XceI RCATGY 2 cut(s) 540, 888
XcmI CCANNNNNNNNNTGG 2 cut(s) 977, 1423
XmnI GAANNNNTTC 1 cut(s) 658
Zsp2I ATGCAT 2 cut(s) 88, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.