Rw5G014910

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
17930401 .. 17938309
7909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G014910.1

Sequence Viewer

Length: 1581 bp
ATGGCGGCACGCATGTTGGCAGCTCGACCCTTCAAGCTCGTCTCACATTTGCCTTCCATGCACGCCTCGACTCCTCTCTTTGCTCGCCAGATTAGCATGGACGCAAAAGGCTTTGCTTCTCGGCTTGTTGATGCTGGTCTATTACGTAGTCAGGCCCTTATTGGAGGGAAATGGTCTGATGCATATGACGGGAACACTATAAAGGTTCACAACCCAGCAACTGGTGATGTCATAACAACCGTCCCATGCATGGGTCAAAATGAGACAAATGATGCAATATCTGCTGCCTCCGAGGCATTCAGTTCCTGGAGCAAGGTCACTAATGTGGAAAGGAGCAAATGTTTAAGGAAATGGTACGATCTACTAATTTCCCACAAAGAAGAACTTGGACAACTCATTACCCTGGAGCAAGGGAAACCTTTACAAGAAGCCATGGGTGAGGTGACCTATGGAGCTGGCTTTATTGAGTTCTTTGCTGAAGAGGCAAAACGCGTATATGGTGATATAATTCCATCGCCTCTGGCTGATCGACGGATGCTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATCACTCCCTGGAACTTCCCATTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACGGTGGTCATTAAACCCTCTGAACTTACACCCCTCACAGCCTTAGCAGCAGCTGAGCTTGCCCTGCAAGCTGGAATACCGCCCGGTGTGATGAATGTGGTAATGGGAAATGCTTCTGCAATTGGGGACGCTTTACTTGCAAGTCCGCAGGTAAGAAAAATCACTTTCACAGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCTGGTGCAGCTGGGACTGTTAAGAAGGTATCTCTTGAACTTGGTGGCAATGCACCCTGCATAGTCTTTGATGATGCAGACCTGGATGTGGCAGTGAAAGGAACTCTTGGAGCAAAGTTCCGTAATACTGGACAGACATGTGTTTGTGCTAATAGGATTTTGGTACAAGAAGGTATCTATGAGAAATTTGTGGATGCTTTTACAAAAGCTGTCCAGAAGCTCCAAGTTGGGCATGGCTTTAGTGAAGGAGTGTCCCAGGGTCCTTTAATCAATGAAGCAGCAGTACAAAAGGTCGAGTCATTTGTCAAAGATGCTACATCAAGGTTAGGAGCAAAAGTTGTTCTTGGAGCCAAAAGGCATAGCCTTGGAATGACCTTTTATGAGCCTACAGTTCTCAGTGATGTCAAGAGTGATATGATTATAGCAAGAGATGAAGTATTTGGACCAGTCGCACCTGTTTTGCGTTTCAAAACTGAGGATGAAGCTCTCCGCATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATGTATTTACAAATAATGTACAACGATCATGGCGTGTTGCTGAAGCTCTTGAATATGGACTTGTTGGTGTCAATGAAGGGTTAATTTCAACAGAGGTGGCTCCTTTTGGAGGTGTCAAGCAGTCTGGTCTTGGACGAGAAGGTTCCAAGTATGGAATGGATGAATATTTGGAAGTTAAATACGTGTGCCTGGGAAATATGAGCAGCAAGTGA

Protein Analysis

526

Amino Acids

56.06

Weight (kDa)

8.28

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 60 - 518 3e-174 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 492
AciI CCGC 5 cut(s) 5, 610, 722, 788, 1333
AcoI YGGCCR 1 cut(s) 1338
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 2 cut(s) 498, 1431
AfaI GTAC 5 cut(s) 356, 643, 1008, 1128, 1389
AfiI CCNNNNNNNGG 6 cut(s) 221, 250, 251, 931, 1356, 1478
AflIII ACRYGT 3 cut(s) 490, 980, 1551
AgsI TTSAA 5 cut(s) 34, 881, 1312, 1421, 1458
AjnI CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1557
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 46, 257
AlwNI CAGNNNCTG 3 cut(s) 221, 306, 695
AoxI GGCC 2 cut(s) 153, 1338
ApeKI GCWGC 9 cut(s) 20, 284, 550, 689, 692, 851, 1121, 1364, 1572
ApoI RAATTY 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 754
AspS9I GGNCC 4 cut(s) 154, 620, 1103, 1286
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 4 cut(s) 236, 449, 454, 512
AvaII GGWCC 3 cut(s) 620, 1103, 1286
BalI TGGCCA 1 cut(s) 1340
BarI GAAGNNNNNNTAC 2 cut(s) 1110, 1142
BbvI GCAGC 8 cut(s) 32, 271, 562, 701, 704, 863, 1133, 1351
BccI CCATC 2 cut(s) 520, 835
BciT130I CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1559
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 2 cut(s) 46, 257
BfmI CTRYAG 2 cut(s) 555, 1230
BfuAI ACCTGC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 696
Bme1390I CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1559
Bme18I GGWCC 3 cut(s) 620, 1103, 1286
BmgT120I GGNCC 4 cut(s) 154, 620, 1103, 1286
BmiI GGNNCC 4 cut(s) 1104, 1192, 1470, 1513
BmrFI CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1559
BmsI GCATC 7 cut(s) 121, 169, 262, 525, 907, 1027, 1144
BpmI CTGGAG 2 cut(s) 328, 425
Bpu10I CCTNAGC 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 726
BsaAI YACGTR 2 cut(s) 146, 1552
BsaJI CCNNGG 8 cut(s) 291, 402, 432, 581, 1098, 1099, 1207, 1558
BsaXI ACNNNNNCTCC 4 cut(s) 325, 355, 1164, 1194
Bsc4I CCNNNNNNNGG 6 cut(s) 221, 250, 251, 931, 1356, 1478
Bse1I ACTGG 3 cut(s) 226, 976, 1289
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1559
BseDI CCNNGG 8 cut(s) 291, 402, 432, 581, 1098, 1099, 1207, 1558
BseGI GGATG 5 cut(s) 540, 934, 1042, 1327, 1534
BseLI CCNNNNNNNGG 6 cut(s) 221, 250, 251, 931, 1356, 1478
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 687, 1252, 1308
BseNI ACTGG 3 cut(s) 226, 976, 1289
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 8 cut(s) 32, 271, 562, 701, 704, 863, 1133, 1351
BseYI CCCAGC 2 cut(s) 214, 854
BsgI GTGCAG 1 cut(s) 870
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 155, 1340
BsiSI CCGG 1 cut(s) 726
BslFI GGGAC 4 cut(s) 227, 782, 871, 1081
BslI CCNNNNNNNGG 6 cut(s) 221, 250, 251, 931, 1356, 1478
BsmAI GTCTC 2 cut(s) 46, 257
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 4 cut(s) 227, 782, 871, 1081
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 2 cut(s) 155, 1340
Bsp1407I TGTACA 1 cut(s) 1387
Bsp143I GATC 3 cut(s) 358, 526, 1394
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 5 cut(s) 5, 610, 722, 788, 1333
BspANI GGCC 2 cut(s) 155, 1340
BspCNI CTCAG 3 cut(s) 688, 1251, 1309
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 1104, 1192, 1470, 1513
BspMI ACCTGC 1 cut(s) 781
BsrDI GCAATG 1 cut(s) 898
BsrGI TGTACA 1 cut(s) 1387
BsrI ACTGG 3 cut(s) 226, 976, 1289
BssECI CCNNGG 8 cut(s) 291, 402, 432, 581, 1098, 1099, 1207, 1558
BssMI GATC 3 cut(s) 358, 526, 1394
BssT1I CCWWGG 2 cut(s) 432, 1207
Bst2UI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1559
Bst4CI ACNGT 4 cut(s) 241, 646, 862, 1234
Bst6I CTCTTC 1 cut(s) 474
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 1387
BstBAI YACGTR 2 cut(s) 146, 1552
BstC8I GCNNGC 6 cut(s) 10, 63, 85, 457, 702, 711
BstDEI CTNAG 4 cut(s) 685, 696, 1238, 1317
BstDSI CCRYGG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 1476
BstF5I GGATG 5 cut(s) 540, 934, 1042, 1327, 1534
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 3 cut(s) 361, 529, 1397
BstMAI GTCTC 2 cut(s) 46, 257
BstMBI GATC 3 cut(s) 358, 526, 1394
BstNI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1559
BstNSI RCATGY 3 cut(s) 16, 636, 984
BstPI GGTNACC 1 cut(s) 442
BstSCI CCNGG 7 cut(s) 305, 402, 581, 724, 924, 1098, 1557
BstSFI CTRYAG 2 cut(s) 555, 1230
BstSNI TACGTA 1 cut(s) 146
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 8 cut(s) 32, 271, 562, 701, 704, 863, 1133, 1351
BsuRI GGCC 2 cut(s) 155, 1340
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 5 cut(s) 540, 934, 1042, 1327, 1534
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 2 cut(s) 942, 1246
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 6 cut(s) 10, 63, 85, 457, 702, 711
CaiI CAGNNNCTG 3 cut(s) 221, 306, 695
Cfr13I GGNCC 4 cut(s) 154, 620, 1103, 1286
CseI GACGC 2 cut(s) 110, 779
Csp6I GTAC 5 cut(s) 355, 642, 1007, 1127, 1388
CspCI CAANNNNNGTGG 2 cut(s) 1446, 1481
CviQI GTAC 5 cut(s) 355, 642, 1007, 1127, 1388
DdeI CTNAG 4 cut(s) 685, 696, 1238, 1317
DpnI GATC 3 cut(s) 360, 528, 1396
DpnII GATC 3 cut(s) 358, 526, 1394
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 1338
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco105I TACGTA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 432, 1207
Eco47I GGWCC 3 cut(s) 620, 1103, 1286
Eco57I CTGAAG 2 cut(s) 498, 1431
Eco91I GGTNACC 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 1476
EcoO109I RGGNCCY 2 cut(s) 154, 1103
EcoO65I GGTNACC 1 cut(s) 442
EcoRII CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1557
EcoT14I CCWWGG 2 cut(s) 432, 1207
EcoT22I ATGCAT 2 cut(s) 184, 251
ErhI CCWWGG 2 cut(s) 432, 1207
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 6 cut(s) 369, 401, 933, 965, 1170, 1202
FaqI GGGAC 4 cut(s) 227, 782, 871, 1081
FauI CCCGC 1 cut(s) 617
FauNDI CATATG 1 cut(s) 184
FokI GGATG 5 cut(s) 547, 941, 1049, 1334, 1541
GsaI CCCAGC 2 cut(s) 218, 858
GsuI CTGGAG 2 cut(s) 328, 425
HaeIII GGCC 2 cut(s) 155, 1340
HapII CCGG 1 cut(s) 726
HgaI GACGC 2 cut(s) 110, 779
HinfI GANTC 2 cut(s) 70, 1139
HpaII CCGG 1 cut(s) 726
HphI GGTGA 4 cut(s) 236, 449, 454, 512
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 178, 292, 664
Hpy188III TCNNGA 4 cut(s) 878, 1057, 1249, 1418
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 7 cut(s) 40, 63, 862, 1007, 1082, 1439, 1502
HpyCH4III ACNGT 4 cut(s) 241, 646, 862, 1234
HpyCH4IV ACGT 2 cut(s) 145, 1551
HpyF3I CTNAG 4 cut(s) 685, 696, 1238, 1317
HpySE526I ACGT 2 cut(s) 145, 1551
Kzo9I GATC 3 cut(s) 358, 526, 1394
LmnI GCTCC 9 cut(s) 309, 333, 406, 452, 953, 1068, 1172, 1190, 1474
Lsp1109I GCAGC 8 cut(s) 32, 271, 562, 701, 704, 863, 1133, 1351
LweI GCATC 7 cut(s) 121, 169, 262, 525, 907, 1027, 1144
MaeII ACGT 2 cut(s) 145, 1551
MaeIII GTNAC 2 cut(s) 316, 442
MalI GATC 3 cut(s) 360, 528, 1396
MboI GATC 3 cut(s) 358, 526, 1394
MboII GAAGA 2 cut(s) 392, 491
MfeI CAATTG 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 1340
MluCI AATT 5 cut(s) 366, 507, 762, 1028, 1452
MluI ACGCGT 1 cut(s) 490
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 2 cut(s) 64, 1148
MmeI TCCRAC 1 cut(s) 808
Mox20I TGGCCA 1 cut(s) 1340
Mph1103I ATGCAT 2 cut(s) 184, 251
MroXI GAANNNNTTC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 1340
MseI TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1451, 1545
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 1340
MspA1I CMGCKG 2 cut(s) 695, 854
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1559
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1559
MvnI CGCG 1 cut(s) 492
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 358, 526, 1394
NlaIV GGNNCC 4 cut(s) 1104, 1192, 1470, 1513
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 316, 442
NsiI ATGCAT 2 cut(s) 184, 251
NspI RCATGY 3 cut(s) 16, 636, 984
OliI CACNNNNGTG 1 cut(s) 323
PasI CCCWGGG 1 cut(s) 1099
PciI ACATGT 1 cut(s) 980
PcsI WCGNNNNNNNCGW 1 cut(s) 1399
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 305
PleI GAGTC 2 cut(s) 64, 1147
PpsI GAGTC 2 cut(s) 64, 1147
Ppu21I YACGTR 2 cut(s) 146, 1552
PpuMI RGGWCCY 1 cut(s) 1103
PscI ACATGT 1 cut(s) 980
Psp5II RGGWCCY 1 cut(s) 1103
Psp6I CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1557
PspEI GGTNACC 1 cut(s) 442
PspFI CCCAGC 2 cut(s) 214, 854
PspGI CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1557
PspN4I GGNNCC 4 cut(s) 1104, 1192, 1470, 1513
PspPI GGNCC 4 cut(s) 154, 620, 1103, 1286
PspPPI RGGWCCY 1 cut(s) 1103
PstNI CAGNNNCTG 3 cut(s) 221, 306, 695
PvuII CAGCTG 2 cut(s) 695, 854
RsaI GTAC 5 cut(s) 356, 643, 1008, 1128, 1389
RsaNI GTAC 5 cut(s) 355, 642, 1007, 1127, 1388
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1451, 1545
Sau3AI GATC 3 cut(s) 358, 526, 1394
Sau96I GGNCC 4 cut(s) 154, 620, 1103, 1286
SchI GAGTC 2 cut(s) 64, 1148
ScrFI CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1559
SfaNI GCATC 7 cut(s) 121, 169, 262, 525, 907, 1027, 1144
SfcI CTRYAG 2 cut(s) 555, 1230
SinI GGWCC 3 cut(s) 620, 1103, 1286
SmiMI CAYNNNNRTG 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 146
Sse9I AATT 5 cut(s) 366, 507, 762, 1028, 1452
SsiI CCGC 5 cut(s) 5, 610, 722, 788, 1333
SspI AATATT 1 cut(s) 1535
StyD4I CCNGG 7 cut(s) 305, 402, 581, 724, 924, 1098, 1557
StyI CCWWGG 2 cut(s) 432, 1207
TaaI ACNGT 4 cut(s) 241, 646, 862, 1234
TaiI ACGT 2 cut(s) 148, 1554
TaqI TCGA 4 cut(s) 25, 68, 529, 1137
TasI AATT 5 cut(s) 366, 507, 762, 1028, 1452
TatI WGTACW 2 cut(s) 1126, 1387
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1451, 1545
Tru9I TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1451, 1545
TscAI CASTG 2 cut(s) 942, 1246
TseFI GTSAC 2 cut(s) 316, 442
TseI GCWGC 9 cut(s) 20, 284, 550, 689, 692, 851, 1121, 1364, 1572
Tsp45I GTSAC 2 cut(s) 316, 442
TspDTI ATGAA 6 cut(s) 749, 1131, 1290, 1338, 1458, 1545
TspGWI ACGGA 2 cut(s) 547, 953
TspRI CASTG 2 cut(s) 942, 1246
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 3 cut(s) 620, 1103, 1286
XagI CCTNNNNNAGG 1 cut(s) 1476
XapI RAATTY 1 cut(s) 1028
XceI RCATGY 3 cut(s) 16, 636, 984
XcmI CCANNNNNNNNNTGG 2 cut(s) 1073, 1522
XmnI GAANNNNTTC 1 cut(s) 754
Zsp2I ATGCAT 2 cut(s) 184, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.