pycom05g21430

Dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
24069628 .. 24076148
6521 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21430.13

Sequence Viewer

Length: 1584 bp
ATGACCTTCAGAGCGTCACGCATGGCAGCTCGATCCTTCAGGCTCCTCTCACATTTGCCTTCCATGCACGCCCCAACTCCTCTTCTCTCTCGCCAGATTAGCATGGACGTGAAAAGCTTTGTCTCTCAGCTTAATGGTGCTGGTCTTTTGCGTAGCCAAGGCCTTATTGGGGGGAAATGGTCTGATGCATATGATGGGAACATTATAAAGGTTCACAATCCAGCAACCGGCGAAGTTATAACAACTGTTCCCTGCATGGGTCAAAAGGAGACAAATGATGCAATATCTTCAGCCTATGGTGCATTTAGTTCTTGGAGCAAGCTCACTGCTTCTGAAAGGAGCAAATATCTGAGGAAATGGTATGATCTACTAATTTCCCACAAAGAAGAGCTTGGGCAACTCATTACCTTGGAGCAAGGGAAACCTCTAAAAGAAGCGATTGGTGAGGTGAACTACGGGGCTGCATTTATTGAGTTCTATGCTGAGGAGGCAAAACGTGTATATGGTGATATAATTCCAGCTACTCTTGCTGATCGGCGACTGTTTGTTTTGAAGCAGCCTATAGGTGTTGTTGGTGCAGTTACTCCCTGGAACTTCCCATTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGCACAGTAGTCATAAAACCCTCTGAGTTTACTCCCCTCACAGCTTTAGCAGCAGCTGAGCTCGCCCTTCAAGCTGGAATACCACCGGGTGTGGTGAATGTGGTTATGGGAAGTGCTTCTGAAATTGGGGATGCTTTACTTGCAAGCCCACAGGTAAGAAAGATCACGTTCACAGGCTCAACAACAGTTGGAAAGAAGTTGATGGCCGGTGCAGCTGGGACTGTTAAAAAGGTATCTCTTGAACTTGGTGGCAATGCACCTTGCATAGTCTTTGATGATGCCGACCTGGATGTGGCTGTGAAAGGAGCTCTTGCAGCAAAGTTCCGTAATAGTGGACAGACATGTGTTTGTGCAAATAGAATTATCGTACAAGAAGGTATCTATGAGAAATTTATGGATGCTTTTGTGAAAGCTGTCCAGAATCTGCAAGTTGGGAATGGCTTCAGTGAAGGTGTGGTGCAGGGCCCTTTAATCAATGAAGCAGCAGTACAAAAGGTCGAATCATTTGTTCAAGATGCTGTATCAAAGGGAGCACAAGTTGTCGTTGGAGCCAAGAGGCATAGCCTTGGAATGACTTTTTATGAGCCTACAGTTCTCAGGGATGTCAAGAGTGATATGCTAATATCAAGAGAGGAAGTATTTGGGCCAGTGGCACCCCTTTTGCGTTTCAAAACTGACGAGGAGGCTATCCGCATTGCTAATGACACCAATGCAGGGTTAGCTGCTTACATATTTACAAATAGCATTCAACGTTCATGGCGTGTCTCTGAAGCTCTTGAATATGGACTTGTTGGTGTCAATGAAGGCCTAATTTCGACAGAGGTGGCTCCCTTTGGAGGTGTCAAACAGTCTGGTCTTGGACGAGAAGGTTCCAAGTATGGGATGGATGAATATTTGGAAGTTAAATACGTGTGCATGGGGAATATGAGCAGCAACTGA

Protein Analysis

528

Amino Acids

56.49

Weight (kDa)

8.31

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 206, 239
AccB1I GGYRCC 1 cut(s) 1297
AciI CCGC 2 cut(s) 616, 1336
AclI AACGTT 1 cut(s) 1396
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 1 cut(s) 1034
AcuI CTGAAG 4 cut(s) 22, 273, 1072, 1434
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 2 cut(s) 1014, 1134
AfiI CCNNNNNNNGG 7 cut(s) 169, 227, 257, 937, 1359, 1481, 1524
AflIII ACRYGT 3 cut(s) 496, 986, 1554
AgsI TTSAA 7 cut(s) 553, 716, 887, 1157, 1315, 1394, 1424
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 2 cut(s) 587, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
Alw21I GWGCWC 3 cut(s) 708, 955, 1180
Alw26I GTCTC 3 cut(s) 127, 263, 1414
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 3 cut(s) 701, 1069, 1581
AoxI GGCC 5 cut(s) 160, 849, 1108, 1289, 1450
ApaI GGGCCC 1 cut(s) 1112
ApoI RAATTY 1 cut(s) 1034
Asp700I GAANNNNTTC 2 cut(s) 760, 1085
AspS9I GGNCC 4 cut(s) 626, 1108, 1109, 1289
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 4 cut(s) 455, 460, 518, 751
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 1112
BanI GGYRCC 1 cut(s) 1297
BanII GRGCYC 3 cut(s) 708, 955, 1112
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
Bbv12I GWGCWC 3 cut(s) 708, 955, 1180
BbvCI CCTCAGC 1 cut(s) 483
BccI CCATC 3 cut(s) 188, 841, 1522
BciT130I CCWGG 2 cut(s) 589, 932
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 3 cut(s) 127, 263, 1414
BfmI CTRYAG 2 cut(s) 561, 1233
BlpI GCTNAGC 1 cut(s) 702
Bme1390I CCNGG 3 cut(s) 589, 732, 932
Bme18I GGWCC 1 cut(s) 626
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 626, 1108, 1109, 1289
BmiI GGNNCC 6 cut(s) 44, 1110, 1195, 1299, 1473, 1516
BmrFI CCNGG 3 cut(s) 589, 732, 932
BmsI GCATC 6 cut(s) 175, 268, 766, 913, 1033, 1150
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 1555
BsaJI CCNNGG 4 cut(s) 157, 408, 587, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 1167, 1197
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 227, 257, 937, 1359, 1481, 1524
Bse118I RCCGGY 2 cut(s) 227, 851
Bse1I ACTGG 1 cut(s) 1292
Bse3DI GCAATG 2 cut(s) 904, 1338
BseBI CCWGG 2 cut(s) 589, 932
BseDI CCNNGG 4 cut(s) 157, 408, 587, 1210
BseGI GGATG 6 cut(s) 781, 940, 1048, 1252, 1533, 1537
BseLI CCNNNNNNNGG 7 cut(s) 169, 227, 257, 937, 1359, 1481, 1524
BseMI GCAATG 2 cut(s) 904, 1338
BseMII CTCAG 6 cut(s) 140, 341, 474, 660, 693, 1255
BseNI ACTGG 1 cut(s) 1292
BseRI GAGGAG 4 cut(s) 35, 69, 500, 1340
BseSI GKGCMC 1 cut(s) 1112
BseYI CCCAGC 1 cut(s) 860
BsgI GTGCAG 4 cut(s) 597, 631, 876, 1124
BshFI GGCC 5 cut(s) 162, 851, 1110, 1291, 1452
BshNI GGYRCC 1 cut(s) 1297
BsiHKAI GWGCWC 3 cut(s) 708, 955, 1180
BsiSI CCGG 3 cut(s) 228, 731, 852
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 7 cut(s) 169, 227, 257, 937, 1359, 1481, 1524
BsmAI GTCTC 3 cut(s) 127, 263, 1414
BsmFI GGGAC 1 cut(s) 877
BsmI GAATGC 1 cut(s) 1389
BsnI GGCC 5 cut(s) 162, 851, 1110, 1291, 1452
Bsp120I GGGCCC 1 cut(s) 1108
Bsp1286I GDGCHC 4 cut(s) 708, 955, 1112, 1180
Bsp143I GATC 4 cut(s) 32, 364, 532, 807
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 2 cut(s) 616, 1336
BspANI GGCC 5 cut(s) 162, 851, 1110, 1291, 1452
BspCNI CTCAG 6 cut(s) 139, 342, 475, 661, 694, 1254
BspLI GGNNCC 6 cut(s) 44, 1110, 1195, 1299, 1473, 1516
BspPI GGATC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 1297
BsrDI GCAATG 2 cut(s) 904, 1338
BsrFI RCCGGY 2 cut(s) 227, 851
BsrI ACTGG 1 cut(s) 1292
BssAI RCCGGY 2 cut(s) 227, 851
BssECI CCNNGG 4 cut(s) 157, 408, 587, 1210
BssMI GATC 4 cut(s) 32, 364, 532, 807
BssT1I CCWWGG 3 cut(s) 157, 408, 1210
Bst2UI CCWGG 2 cut(s) 589, 932
Bst4CI ACNGT 7 cut(s) 247, 543, 652, 832, 868, 1237, 1494
Bst6I CTCTTC 2 cut(s) 87, 381
BstBAI YACGTR 1 cut(s) 1555
BstC8I GCNNGC 4 cut(s) 69, 320, 708, 790
BstDEI CTNAG 6 cut(s) 126, 350, 483, 669, 702, 1241
BstF5I GGATG 6 cut(s) 781, 940, 1048, 1252, 1533, 1537
BstKTI GATC 4 cut(s) 35, 367, 535, 810
BstMAI GTCTC 3 cut(s) 127, 263, 1414
BstMBI GATC 4 cut(s) 32, 364, 532, 807
BstNI CCWGG 2 cut(s) 589, 932
BstNSI RCATGY 2 cut(s) 642, 990
BstSCI CCNGG 3 cut(s) 587, 730, 930
BstSFI CTRYAG 2 cut(s) 561, 1233
BstSLI GKGCMC 1 cut(s) 1112
BsuRI GGCC 5 cut(s) 162, 851, 1110, 1291, 1452
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 6 cut(s) 781, 940, 1048, 1252, 1533, 1537
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 324, 1096, 1299
Cac8I GCNNGC 4 cut(s) 69, 320, 708, 790
CaiI CAGNNNCTG 3 cut(s) 701, 1069, 1581
Cfr10I RCCGGY 2 cut(s) 227, 851
Cfr13I GGNCC 4 cut(s) 626, 1108, 1109, 1289
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 1013, 1133
CviAII CATG 8 cut(s) 22, 64, 103, 256, 639, 987, 1401, 1561
CviQI GTAC 2 cut(s) 1013, 1133
DdeI CTNAG 6 cut(s) 126, 350, 483, 669, 702, 1241
DpnI GATC 4 cut(s) 34, 366, 534, 809
DpnII GATC 4 cut(s) 32, 364, 532, 807
DraIII CACNNNGTG 1 cut(s) 734
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 2 cut(s) 87, 381
EarI CTCTTC 2 cut(s) 87, 381
Ecl136II GAGCTC 2 cut(s) 706, 953
Eco130I CCWWGG 3 cut(s) 157, 408, 1210
Eco147I AGGCCT 2 cut(s) 162, 1452
Eco24I GRGCYC 3 cut(s) 708, 955, 1112
Eco47I GGWCC 1 cut(s) 626
Eco53kI GAGCTC 2 cut(s) 706, 953
Eco57I CTGAAG 4 cut(s) 22, 273, 1072, 1434
EcoICRI GAGCTC 2 cut(s) 706, 953
EcoO109I RGGNCCY 2 cut(s) 1108, 1109
EcoRII CCWGG 2 cut(s) 587, 930
EcoT14I CCWWGG 3 cut(s) 157, 408, 1210
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 3 cut(s) 708, 955, 1112
ErhI CCWWGG 3 cut(s) 157, 408, 1210
FaeI CATG 8 cut(s) 25, 67, 106, 259, 642, 990, 1404, 1564
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 939, 971
FaqI GGGAC 1 cut(s) 877
FatI CATG 8 cut(s) 21, 63, 102, 255, 638, 986, 1400, 1560
FauI CCCGC 1 cut(s) 623
FauNDI CATATG 1 cut(s) 190
FokI GGATG 6 cut(s) 788, 947, 1055, 1259, 1540, 1544
FriOI GRGCYC 3 cut(s) 708, 955, 1112
GsaI CCCAGC 1 cut(s) 864
HaeIII GGCC 5 cut(s) 162, 851, 1110, 1291, 1452
HapII CCGG 3 cut(s) 228, 731, 852
HgaI GACGC 1 cut(s) 3
Hin1II CATG 8 cut(s) 25, 67, 106, 259, 642, 990, 1404, 1564
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 1066, 1145
HpaII CCGG 3 cut(s) 228, 731, 852
HphI GGTGA 4 cut(s) 455, 460, 518, 751
Hpy166II GTNNAC 5 cut(s) 214, 451, 675, 816, 980
Hpy188I TCNGA 7 cut(s) 11, 184, 334, 351, 670, 766, 1414
Hpy188III TCNNGA 6 cut(s) 884, 1063, 1157, 1252, 1272, 1421
Hpy8I GTNNAC 5 cut(s) 214, 451, 675, 816, 980
HpyAV CCTTC 8 cut(s) 16, 46, 69, 722, 1013, 1088, 1442, 1505
HpyCH4III ACNGT 7 cut(s) 247, 543, 652, 832, 868, 1237, 1494
HpyCH4IV ACGT 5 cut(s) 108, 496, 812, 1396, 1554
HpyF3I CTNAG 6 cut(s) 126, 350, 483, 669, 702, 1241
HpySE526I ACGT 5 cut(s) 108, 496, 812, 1396, 1554
Hsp92II CATG 8 cut(s) 25, 67, 106, 259, 642, 990, 1404, 1564
Kzo9I GATC 4 cut(s) 32, 364, 532, 807
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 8 cut(s) 48, 315, 339, 412, 950, 1175, 1193, 1477
LweI GCATC 6 cut(s) 175, 268, 766, 913, 1033, 1150
MaeII ACGT 5 cut(s) 108, 496, 812, 1396, 1554
MaeIII GTNAC 2 cut(s) 15, 580
MalI GATC 4 cut(s) 34, 366, 534, 809
MboI GATC 4 cut(s) 32, 364, 532, 807
MboII GAAGA 3 cut(s) 74, 279, 398
MhlI GDGCHC 4 cut(s) 708, 955, 1112, 1180
MluCI AATT 6 cut(s) 372, 513, 768, 1005, 1034, 1455
MmeI TCCRAC 2 cut(s) 814, 1171
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 2 cut(s) 760, 1085
MseI TTAA 4 cut(s) 132, 870, 1115, 1548
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 701, 860
MspI CCGG 3 cut(s) 228, 731, 852
MspR9I CCNGG 3 cut(s) 589, 732, 932
Mva1269I GAATGC 1 cut(s) 1389
MvaI CCWGG 2 cut(s) 589, 932
NciI CCSGG 1 cut(s) 732
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 32, 364, 532, 807
NlaIII CATG 8 cut(s) 25, 67, 106, 259, 642, 990, 1404, 1564
NlaIV GGNNCC 6 cut(s) 44, 1110, 1195, 1299, 1473, 1516
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 2 cut(s) 642, 990
PceI AGGCCT 2 cut(s) 162, 1452
PciI ACATGT 1 cut(s) 986
PciSI GCTCTTC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 1402
PctI GAATGC 1 cut(s) 1389
PdmI GAANNNNTTC 2 cut(s) 760, 1085
PfeI GAWTC 2 cut(s) 1066, 1145
Ppu21I YACGTR 1 cut(s) 1555
PscI ACATGT 1 cut(s) 986
PsiI TTATAA 2 cut(s) 206, 239
Psp124BI GAGCTC 2 cut(s) 708, 955
Psp1406I AACGTT 1 cut(s) 1396
Psp6I CCWGG 2 cut(s) 587, 930
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 2 cut(s) 587, 930
PspN4I GGNNCC 6 cut(s) 44, 1110, 1195, 1299, 1473, 1516
PspOMI GGGCCC 1 cut(s) 1108
PspPI GGNCC 4 cut(s) 626, 1108, 1109, 1289
PstNI CAGNNNCTG 3 cut(s) 701, 1069, 1581
PvuII CAGCTG 2 cut(s) 701, 860
RsaI GTAC 2 cut(s) 1014, 1134
RsaNI GTAC 2 cut(s) 1013, 1133
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 2 cut(s) 708, 955
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 4 cut(s) 132, 870, 1115, 1548
Sau3AI GATC 4 cut(s) 32, 364, 532, 807
Sau96I GGNCC 4 cut(s) 626, 1108, 1109, 1289
ScrFI CCNGG 3 cut(s) 589, 732, 932
SduI GDGCHC 4 cut(s) 708, 955, 1112, 1180
SfaNI GCATC 6 cut(s) 175, 268, 766, 913, 1033, 1150
SfcI CTRYAG 2 cut(s) 561, 1233
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 6 cut(s) 372, 513, 768, 1005, 1034, 1455
SseBI AGGCCT 2 cut(s) 162, 1452
SsiI CCGC 2 cut(s) 616, 1336
SspI AATATT 1 cut(s) 1538
SstI GAGCTC 2 cut(s) 708, 955
StuI AGGCCT 2 cut(s) 162, 1452
StyD4I CCNGG 3 cut(s) 587, 730, 930
StyI CCWWGG 3 cut(s) 157, 408, 1210
TaaI ACNGT 7 cut(s) 247, 543, 652, 832, 868, 1237, 1494
TaiI ACGT 5 cut(s) 111, 499, 815, 1399, 1557
TaqI TCGA 3 cut(s) 31, 1143, 1460
TasI AATT 6 cut(s) 372, 513, 768, 1005, 1034, 1455
TatI WGTACW 1 cut(s) 1132
TfiI GAWTC 2 cut(s) 1066, 1145
Tru1I TTAA 4 cut(s) 132, 870, 1115, 1548
Tru9I TTAA 4 cut(s) 132, 870, 1115, 1548
TscAI CASTG 3 cut(s) 331, 1096, 1299
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 4 cut(s) 1137, 1389, 1461, 1548
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 3 cut(s) 331, 1096, 1299
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 1 cut(s) 1034
XceI RCATGY 2 cut(s) 642, 990
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 1525
XmnI GAANNNNTTC 2 cut(s) 760, 1085
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.