Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010366

Physical Location & Seq

Genomic Coordinates Forward (+)

77219324 .. 77225644

Gene Structure 6321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGTCACGCATGCTGGCAGCTCAAACCTTCAAGCTCGTCTCACATTTGCCTTCCATGCACGCCTCGACTCCTCTCTTTGCTCGCCAGATTAGCATGGACGCAAAAGGCTTTGCTTCTCGGCTTGTTGATGCTGGTCTATTACGTAGTCAGGCCCTTATTGGAGGGAAATGGTCTGATGCATATGACGGGAACACTATAAAGGTTCACAACCCAGCAACTGGTGATGTCATAACAACCGTCCCATGCATGGGTCAAAATGAGACAAATGATGCAATATCTGCAGCCTCCGATGCATTCAGTTTTAGACCGCTTACCCGAATTAATGTGGTTGATAGTGTTTTGGATATCCAGGCACTAGTTATTATTGAGTCGTTTGAAGGTGGACTCTGTACTTCCATGTACGATCTACTAATTTCCCACAAAGAAGAACTTGGACAACTCATTACCCTGGAGCAAGGGAAACCTTTACAAGAAGCCATGGGTGAGGTGACCTATGGAGCTGGCTTTATTGAGTTCTTTGCTGAAGAGGCAAAACGTGTATATGGTGATGTAATTCCATCGCCTCTGGCCGATCGACGGATGCTTGTTTTAAAGCAGCCTGTAGGTGTTATTGGTGCAATCACTCCCTGGAACTTCCCATTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACAGTGGTCATTAAACCCTCTGAACTTACACCCCTCACAGCCTTAGCAGCAGCTGAGCTTGCCCTGCAAGCTGGAATACCGCCGGGTGTGATGAATGTGGTAATGGGAAATGCTTCTGCAATTGGGGACGCTTTACTTGCAAGTCCACAGGGTCTCAATGTTAGTTGCCCTAGGGTTTCTTTTCTCCTATTTAAGTTTATTGCTGGTAAACCTAGTTATCAATCCGTCTGCGTCGGTGGTATCGAGCAGGTCTTCCCTGTCTCTTTTATTTGCCTTAGTAGCAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001505 GO:0003674 GO:0003824 GO:0004777 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009448 GO:0009450 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0016054 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0019752 GO:0031974 GO:0032787 GO:0036094 GO:0042133 GO:0042135 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072329 GO:0072593 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00250 ko00650 ko01100 map00250 map00650 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

326

Amino Acids

34.49

Weight (kDa)

5.62

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	133 - 280	5.9e-52	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79440
fragaria_vesca	FvH4_3g14080 FvH4_3g14080 FvH4_3g14080 FvH4_3g14080
malus_domestica	MD05G1238300.v1.1 MD10G1216600.v1.1
prunus_persica	Prupe.4G128100_v2.0.a1 Prupe.4G128100_v2.0.a1
pyrus_communis	pycom05g21430 pycom10g18260
rosa_chinensis	RchiOBHm_Chr5g0023391
rosa_laevigata	RLG00000032718
rosa_multiflora	Rmu_sc0023767.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055660 Rroxscaffold_1G00055950
rosa_rugosa	Rorug05G0078800
rosa_samantha	Rh5AG165700 Rh5BG164900 Rh5DG166400
rosa_wichuraiana	Rw5G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	928
AccB7I	CCANNNNNTGG	1 cut(s)	221
AciI	CCGC	3 cut(s)	311, 658, 770
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	394, 404, 691
AfiI	CCNNNNNNNGG	4 cut(s)	221, 250, 251, 579
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	34, 380
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	3 cut(s)	351, 450, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	6 cut(s)	23, 37, 503, 743, 748, 761
AluI	AGCT	6 cut(s)	23, 37, 503, 743, 748, 761
Alw26I	GTCTC	4 cut(s)	46, 257, 848, 955
AlwNI	CAGNNNCTG	2 cut(s)	221, 743
AoxI	GGCC	2 cut(s)	153, 570
ApeKI	GCWGC	5 cut(s)	20, 284, 598, 737, 740
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	802
AspA2I	CCTAGG	1 cut(s)	860
AspS9I	GGNCC	2 cut(s)	154, 668
AsuC2I	CCSGG	1 cut(s)	774
AsuHPI	GGTGA	4 cut(s)	236, 497, 502, 560
AvaII	GGWCC	1 cut(s)	668
AvrII	CCTAGG	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	934
BbvI	GCAGC	5 cut(s)	32, 296, 610, 749, 752
BccI	CCATC	1 cut(s)	568
BciT130I	CCWGG	3 cut(s)	353, 452, 631
BcnI	CCSGG	1 cut(s)	774
BcoDI	GTCTC	4 cut(s)	46, 257, 848, 955
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	3 cut(s)	359, 861, 903
BfmI	CTRYAG	2 cut(s)	282, 603
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	5 cut(s)	21, 285, 599, 738, 741
BlnI	CCTAGG	1 cut(s)	860
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	5 cut(s)	22, 286, 600, 739, 742
Bme1390I	CCNGG	4 cut(s)	353, 452, 631, 774
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	154, 668
BmrFI	CCNGG	4 cut(s)	353, 452, 631, 774
BmsI	GCATC	5 cut(s)	121, 169, 262, 283, 573
BpiI	GAAGAC	1 cut(s)	934
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	733
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuMI	CCSGG	1 cut(s)	774
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	4 cut(s)	450, 480, 629, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 250, 251, 579
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	979
BseBI	CCWGG	3 cut(s)	353, 452, 631
BseDI	CCNNGG	4 cut(s)	450, 480, 629, 860
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	4 cut(s)	221, 250, 251, 579
BseMI	GCAATG	1 cut(s)	979
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	5 cut(s)	32, 296, 610, 749, 752
BseYI	CCCAGC	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	155, 572
BsiEI	CGRYCG	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	2 cut(s)	227, 830
BslI	CCNNNNNNNGG	4 cut(s)	221, 250, 251, 579
BsmAI	GTCTC	4 cut(s)	46, 257, 848, 955
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	227, 830
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	155, 572
Bso31I	GGTCTC	1 cut(s)	848
Bsp1407I	TGTACA	1 cut(s)	689
Bsp143I	GATC	2 cut(s)	406, 574
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	3 cut(s)	311, 658, 770
BspANI	GGCC	2 cut(s)	155, 572
BspCNI	CTCAG	1 cut(s)	736
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	979
BsrGI	TGTACA	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	450, 480, 629, 860
BssMI	GATC	2 cut(s)	406, 574
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	480, 860
Bst2UI	CCWGG	3 cut(s)	353, 452, 631
Bst4CI	ACNGT	2 cut(s)	241, 694
Bst6I	CTCTTC	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	7 cut(s)	14, 18, 63, 85, 505, 750, 759
BstDEI	CTNAG	3 cut(s)	733, 744, 965
BstDSI	CCRYGG	1 cut(s)	480
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	588
BstKTI	GATC	2 cut(s)	409, 577
BstMAI	GTCTC	4 cut(s)	46, 257, 848, 955
BstMBI	GATC	2 cut(s)	406, 574
BstMCI	CGRYCG	1 cut(s)	577
BstNI	CCWGG	3 cut(s)	353, 452, 631
BstNSI	RCATGY	2 cut(s)	16, 684
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	4 cut(s)	351, 450, 629, 772
BstSFI	CTRYAG	2 cut(s)	282, 603
BstSNI	TACGTA	1 cut(s)	146
BstV1I	GCAGC	5 cut(s)	32, 296, 610, 749, 752
BstV2I	GAAGAC	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	155, 572
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	7 cut(s)	14, 18, 63, 85, 505, 750, 759
CaiI	CAGNNNCTG	2 cut(s)	221, 743
Cfr13I	GGNCC	2 cut(s)	154, 668
CseI	GACGC	3 cut(s)	110, 827, 910
Csp6I	GTAC	3 cut(s)	393, 403, 690
CviAII	CATG	8 cut(s)	13, 58, 97, 246, 250, 400, 481, 681
CviQI	GTAC	3 cut(s)	393, 403, 690
DdeI	CTNAG	3 cut(s)	733, 744, 965
DpnI	GATC	2 cut(s)	408, 576
DpnII	GATC	2 cut(s)	406, 574
DraI	TTTAAA	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco105I	TACGTA	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	480, 860
Eco31I	GGTCTC	1 cut(s)	848
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	351, 450, 629
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	480, 860
EcoT22I	ATGCAT	3 cut(s)	184, 251, 298
ErhI	CCWWGG	2 cut(s)	480, 860
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	8 cut(s)	16, 61, 100, 249, 253, 403, 484, 684
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	2 cut(s)	227, 830
FatI	CATG	8 cut(s)	12, 57, 96, 245, 249, 399, 480, 680
FauI	CCCGC	1 cut(s)	665
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	5 cut(s)	21, 285, 599, 738, 741
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	5 cut(s)	21, 285, 599, 738, 741
FspBI	CTAG	3 cut(s)	359, 861, 903
GluI	GCNGC	5 cut(s)	21, 285, 599, 738, 741
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	155, 572
HapII	CCGG	1 cut(s)	773
HgaI	GACGC	3 cut(s)	110, 827, 910
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	16, 61, 100, 249, 253, 403, 484, 684
HinfI	GANTC	3 cut(s)	70, 371, 387
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	4 cut(s)	236, 497, 502, 560
Hpy166II	GTNNAC	4 cut(s)	208, 386, 836, 899
Hpy188I	TCNGA	3 cut(s)	178, 292, 712
Hpy8I	GTNNAC	4 cut(s)	208, 386, 836, 899
Hpy99I	CGWCG	2 cut(s)	582, 926
HpyAV	CCTTC	3 cut(s)	40, 63, 374
HpyCH4III	ACNGT	2 cut(s)	241, 694
HpyCH4IV	ACGT	2 cut(s)	145, 538
HpyF3I	CTNAG	3 cut(s)	733, 744, 965
HpySE526I	ACGT	2 cut(s)	145, 538
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	16, 61, 100, 249, 253, 403, 484, 684
Kzo9I	GATC	2 cut(s)	406, 574
LmnI	GCTCC	2 cut(s)	454, 500
Lsp1109I	GCAGC	5 cut(s)	32, 296, 610, 749, 752
LweI	GCATC	5 cut(s)	121, 169, 262, 283, 573
MaeI	CTAG	3 cut(s)	359, 861, 903
MaeII	ACGT	2 cut(s)	145, 538
MaeIII	GTNAC	2 cut(s)	6, 490
MalI	GATC	2 cut(s)	408, 576
MboI	GATC	2 cut(s)	406, 574
MboII	GAAGA	3 cut(s)	440, 539, 934
MfeI	CAATTG	1 cut(s)	810
MluCI	AATT	4 cut(s)	321, 414, 555, 810
MlyI	GAGTC	3 cut(s)	64, 380, 381
MnlI	CCTC	9 cut(s)	76, 84, 158, 298, 481, 523, 576, 718, 734
Mph1103I	ATGCAT	3 cut(s)	184, 251, 298
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	4 cut(s)	324, 593, 702, 882
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	4 cut(s)	353, 452, 631, 774
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	3 cut(s)	353, 452, 631
NciI	CCSGG	1 cut(s)	774
NcoI	CCATGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	406, 574
NlaIII	CATG	8 cut(s)	16, 61, 100, 249, 253, 403, 484, 684
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	6, 490
NsiI	ATGCAT	3 cut(s)	184, 251, 298
NspI	RCATGY	2 cut(s)	16, 684
PaeI	GCATGC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	802
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	22, 286, 600, 739, 742
Ple19I	CGATCG	1 cut(s)	577
PleI	GAGTC	3 cut(s)	64, 379, 381
PpsI	GAGTC	3 cut(s)	64, 379, 381
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	3 cut(s)	351, 450, 629
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	3 cut(s)	351, 450, 629
PspPI	GGNCC	2 cut(s)	154, 668
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	2 cut(s)	221, 743
PvuI	CGATCG	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	3 cut(s)	394, 404, 691
RsaNI	GTAC	3 cut(s)	393, 403, 690
SaqAI	TTAA	4 cut(s)	324, 593, 702, 882
SatI	GCNGC	5 cut(s)	21, 285, 599, 738, 741
Sau3AI	GATC	2 cut(s)	406, 574
Sau96I	GGNCC	2 cut(s)	154, 668
SchI	GAGTC	3 cut(s)	64, 380, 381
ScrFI	CCNGG	4 cut(s)	353, 452, 631, 774
SfaNI	GCATC	5 cut(s)	121, 169, 262, 283, 573
SfcI	CTRYAG	2 cut(s)	282, 603
SinI	GGWCC	1 cut(s)	668
SnaBI	TACGTA	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	358
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	4 cut(s)	321, 414, 555, 810
SsiI	CCGC	3 cut(s)	311, 658, 770
SspMI	CTAG	3 cut(s)	359, 861, 903
StyD4I	CCNGG	4 cut(s)	351, 450, 629, 772
StyI	CCWWGG	2 cut(s)	480, 860
TaaI	ACNGT	2 cut(s)	241, 694
TaiI	ACGT	2 cut(s)	148, 541
TaqI	TCGA	3 cut(s)	68, 577, 933
TasI	AATT	4 cut(s)	321, 414, 555, 810
TatI	WGTACW	2 cut(s)	392, 689
Tru1I	TTAA	4 cut(s)	324, 593, 702, 882
Tru9I	TTAA	4 cut(s)	324, 593, 702, 882
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	2 cut(s)	6, 490
TseI	GCWGC	5 cut(s)	20, 284, 598, 737, 740
Tsp45I	GTSAC	2 cut(s)	6, 490
TspDTI	ATGAA	1 cut(s)	797
TspGWI	ACGGA	2 cut(s)	595, 904
TspRI	CASTG	1 cut(s)	699
Van91I	CCANNNNNTGG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	668
VspI	ATTAAT	1 cut(s)	324
XceI	RCATGY	2 cut(s)	16, 684
XmaJI	CCTAGG	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	3 cut(s)	359, 861, 903
Zsp2I	ATGCAT	3 cut(s)	184, 251, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.