FvH4_3g14080

Dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
8452225 .. 8461003
8779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14080.t1

Sequence Viewer

Length: 1482 bp
ATGGACGCAAAGGGCTTTGCTTCTCGGCTTGTTGATGCTGGTCTATTACGTAGTCAGGCTCTTATTGGAGGGAAATGGTCTGATGCATATGATGGGAAAACTATAGAGGTTCACAACCCAGCAACTGGTGATGTCATAACAACCGTCCCATGCATGGGTCAAAATGAGACAAATGATGCAATATCTGCAGCCTACAATGCATTCAGTTCGTGGAGCAAGGTCACTAGTGTTGAAAGGAGCAAGTGTTTAAGGAAATGGTACGATCTACTCATTTCCCATAAGGAAGAACTTGGACAACTCATTACCCTGGAGCAAGGGAAACCTTTACAAGAAGCCATGGGTGAGGTGACCTATGGAGCTGGCTTCATCGAGTTCTTTGCTGAAGAGGCAAAACGTGTATATGGTGATATAATTCCATCACCTCTTGCCGATCGACGATTGCTTGTCTTAAAGCAGCCTGTAGGTGTTGTTGGTGCGATCACTCCTTGGAACTTCCCATTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACAGTGGTCATTAAACCGTCTGAACTTACACCCCTCACAGCCTTAGCAGCAGCTGAGCTTGCCCTGCAAGCTGGAATACCGCCGGGTGTGGTGAATGTAGTAATGGGAAATGCTTCTGCAATTGGGGACGCTTTACTTGCAAGTCCGCAGGTAAGAAAAATCACTTTCACAGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCTGGTGCAGCTGGGACTGTTAAAAAGGTATCTCTTGAACTTGGTGGCAATGCACCCTGCATAGTCTTTGATGATGCAGATCTGGATGTGGCAGTAAAAGGAACTCTTGGAGCAAAGTTCCGTAATACTGGACAGACATGTGTTTGTGCTAATAGGATTATGGTACAAGAAGGTATCTATGAAAAATTTGTGGATGCTTTTTCCAAAGCTGTCCAGAAGTTCCAAGTTGGGCATGGCTTTAGTGAAGGAGTGACCCAGGGTCCTTTAATCAATGAAGCAGCAGTACAAAAGGTTGAGTCATTTGTCAAAGATGCCACATCAAAGGGAGCAAAAGTTGTTCTTGGAGCCAAAAGGCATAGCCTTGGAATGACCTTTTATGAGCCTACAGTTCTCAGTGATGTCAAGAGTGACATGATTATAGCAAGAGAGGAAGTATTTGGACCAGTTGCACCTGTTTTGCGTTTCAAAACTGAGGACGACGCTCTCCGCATGGCTAATGATACAAATGCAGGGTTAGCTGCTTACATATTTACAAATAGTGTACAACGATCATGGCGTGTTGCTGAAGCTCTTGAATATGGACTTGTTGGTGTCAATGAAGGGTTAATTTCAACAGAGGTGGCTCCTTTTGGAGGTGTCAAGCAGTCTGGTCTTGGACGAGAAGGTTCCAAGTATGGAATGGATGAATATTTGGAAATTAAATACGTGTGCCTGGGGAATATGAACAGCAAGTGA

Protein Analysis

494

Amino Acids

52.47

Weight (kDa)

6.5

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 27 - 485 1.4e-175 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 4 cut(s) 514, 626, 692, 1234
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 2 cut(s) 402, 1332
AfaI GTAC 5 cut(s) 260, 547, 912, 1032, 1290
AfiI CCNNNNNNNGG 4 cut(s) 125, 154, 155, 1379
AflIII ACRYGT 3 cut(s) 394, 884, 1452
AgsI TTSAA 5 cut(s) 233, 785, 1213, 1322, 1359
AhdI GACNNNNNGTC 1 cut(s) 1005
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 3 cut(s) 306, 1002, 1458
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 8 cut(s) 359, 599, 604, 617, 758, 956, 1265, 1316
AluI AGCT 8 cut(s) 359, 599, 604, 617, 758, 956, 1265, 1316
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 2 cut(s) 125, 599
ApeKI GCWGC 7 cut(s) 188, 454, 593, 596, 755, 1025, 1265
ApoI RAATTY 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 658
AspS9I GGNCC 3 cut(s) 524, 1007, 1187
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 6 cut(s) 140, 353, 358, 411, 416, 649
AvaII GGWCC 3 cut(s) 524, 1007, 1187
BarI GAAGNNNNNNTAC 2 cut(s) 1014, 1046
BbvI GCAGC 7 cut(s) 200, 466, 605, 608, 767, 1037, 1252
BccI CCATC 3 cut(s) 86, 424, 739
BcgI CGANNNNNNTGC 4 cut(s) 189, 223, 359, 393
BciT130I CCWGG 3 cut(s) 308, 1004, 1460
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 4 cut(s) 102, 186, 459, 1131
BfuAI ACCTGC 1 cut(s) 685
BglII AGATCT 1 cut(s) 826
BisI GCNGC 7 cut(s) 189, 455, 594, 597, 756, 1026, 1266
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 7 cut(s) 190, 456, 595, 598, 757, 1027, 1267
Bme1390I CCNGG 4 cut(s) 308, 630, 1004, 1460
Bme18I GGWCC 3 cut(s) 524, 1007, 1187
BmeRI GACNNNNNGTC 1 cut(s) 1005
BmgT120I GGNCC 3 cut(s) 524, 1007, 1187
BmiI GGNNCC 4 cut(s) 1008, 1093, 1371, 1414
BmrFI CCNGG 4 cut(s) 308, 630, 1004, 1460
BmsI GCATC 6 cut(s) 25, 73, 166, 811, 931, 1048
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 589
Bpu1102I GCTNAGC 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 630
BsaAI YACGTR 2 cut(s) 50, 1453
BsaBI GATNNNNATC 1 cut(s) 825
BsaJI CCNNGG 7 cut(s) 306, 336, 485, 1002, 1003, 1108, 1459
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 1065, 1095
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 154, 155, 1379
Bse1I ACTGG 3 cut(s) 130, 880, 1190
Bse3DI GCAATG 1 cut(s) 802
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 3 cut(s) 308, 1004, 1460
BseDI CCNNGG 7 cut(s) 306, 336, 485, 1002, 1003, 1108, 1459
BseGI GGATG 3 cut(s) 838, 946, 1435
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 4 cut(s) 125, 154, 155, 1379
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 591, 1153, 1209
BseNI ACTGG 3 cut(s) 130, 880, 1190
BseXI GCAGC 7 cut(s) 200, 466, 605, 608, 767, 1037, 1252
BseYI CCCAGC 2 cut(s) 118, 758
BsgI GTGCAG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 433
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 3 cut(s) 131, 686, 775
BslI CCNNNNNNNGG 4 cut(s) 125, 154, 155, 1379
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 3 cut(s) 131, 686, 775
BsmI GAATGC 1 cut(s) 200
Bsp1407I TGTACA 2 cut(s) 545, 1288
Bsp143I GATC 5 cut(s) 262, 430, 477, 826, 1295
Bsp1720I GCTNAGC 1 cut(s) 600
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 4 cut(s) 514, 626, 692, 1234
BspCNI CTCAG 3 cut(s) 592, 1152, 1210
BspLI GGNNCC 4 cut(s) 1008, 1093, 1371, 1414
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 685
BsrDI GCAATG 1 cut(s) 802
BsrGI TGTACA 2 cut(s) 545, 1288
BsrI ACTGG 3 cut(s) 130, 880, 1190
BssECI CCNNGG 7 cut(s) 306, 336, 485, 1002, 1003, 1108, 1459
BssMI GATC 5 cut(s) 262, 430, 477, 826, 1295
BssT1I CCWWGG 3 cut(s) 336, 485, 1108
Bst2UI CCWGG 3 cut(s) 308, 1004, 1460
Bst4CI ACNGT 5 cut(s) 145, 550, 564, 766, 1135
Bst6I CTCTTC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 2 cut(s) 545, 1288
BstBAI YACGTR 2 cut(s) 50, 1453
BstC8I GCNNGC 3 cut(s) 361, 606, 615
BstDEI CTNAG 4 cut(s) 589, 600, 1139, 1218
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 1377
BstF5I GGATG 3 cut(s) 838, 946, 1435
BstKTI GATC 5 cut(s) 265, 433, 480, 829, 1298
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 5 cut(s) 262, 430, 477, 826, 1295
BstMCI CGRYCG 1 cut(s) 433
BstNI CCWGG 3 cut(s) 308, 1004, 1460
BstNSI RCATGY 2 cut(s) 540, 888
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 4 cut(s) 306, 628, 1002, 1458
BstSFI CTRYAG 4 cut(s) 102, 186, 459, 1131
BstSNI TACGTA 1 cut(s) 50
BstV1I GCAGC 7 cut(s) 200, 466, 605, 608, 767, 1037, 1252
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 838, 946, 1435
BtsIMutI CAGTG 2 cut(s) 555, 1147
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 3 cut(s) 361, 606, 615
CaiI CAGNNNCTG 2 cut(s) 125, 599
Cfr13I GGNCC 3 cut(s) 524, 1007, 1187
CseI GACGC 3 cut(s) 14, 683, 1235
Csp6I GTAC 5 cut(s) 259, 546, 911, 1031, 1289
CspCI CAANNNNNGTGG 2 cut(s) 1347, 1382
CviAII CATG 9 cut(s) 150, 154, 337, 537, 885, 980, 1159, 1237, 1299
CviQI GTAC 5 cut(s) 259, 546, 911, 1031, 1289
DdeI CTNAG 4 cut(s) 589, 600, 1139, 1218
DpnI GATC 5 cut(s) 264, 432, 479, 828, 1297
DpnII GATC 5 cut(s) 262, 430, 477, 826, 1295
DriI GACNNNNNGTC 1 cut(s) 1005
Eam1104I CTCTTC 1 cut(s) 378
Eam1105I GACNNNNNGTC 1 cut(s) 1005
EarI CTCTTC 1 cut(s) 378
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 3 cut(s) 336, 485, 1108
Eco47I GGWCC 3 cut(s) 524, 1007, 1187
Eco57I CTGAAG 2 cut(s) 402, 1332
Eco91I GGTNACC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 1377
EcoO109I RGGNCCY 1 cut(s) 1007
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 306, 1002, 1458
EcoT14I CCWWGG 3 cut(s) 336, 485, 1108
EcoT22I ATGCAT 3 cut(s) 88, 155, 202
ErhI CCWWGG 3 cut(s) 336, 485, 1108
FaeI CATG 9 cut(s) 153, 157, 340, 540, 888, 983, 1162, 1240, 1302
FalI AAGNNNNNCTT 4 cut(s) 837, 869, 1071, 1103
FaqI GGGAC 3 cut(s) 131, 686, 775
FatI CATG 9 cut(s) 149, 153, 336, 536, 884, 979, 1158, 1236, 1298
FauI CCCGC 1 cut(s) 521
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 7 cut(s) 189, 455, 594, 597, 756, 1026, 1266
FokI GGATG 3 cut(s) 845, 953, 1442
Fsp4HI GCNGC 7 cut(s) 189, 455, 594, 597, 756, 1026, 1266
FspBI CTAG 1 cut(s) 225
GluI GCNGC 7 cut(s) 189, 455, 594, 597, 756, 1026, 1266
GsaI CCCAGC 2 cut(s) 122, 762
GsuI CTGGAG 1 cut(s) 329
HapII CCGG 1 cut(s) 629
HgaI GACGC 3 cut(s) 14, 683, 1235
Hin1II CATG 9 cut(s) 153, 157, 340, 540, 888, 983, 1162, 1240, 1302
HinfI GANTC 1 cut(s) 1043
HpaII CCGG 1 cut(s) 629
HphI GGTGA 6 cut(s) 140, 353, 358, 411, 416, 649
Hpy166II GTNNAC 2 cut(s) 112, 1289
Hpy188I TCNGA 2 cut(s) 82, 568
Hpy188III TCNNGA 5 cut(s) 782, 830, 961, 1150, 1319
Hpy8I GTNNAC 2 cut(s) 112, 1289
Hpy99I CGWCG 2 cut(s) 438, 1229
HpyAV CCTTC 4 cut(s) 911, 986, 1340, 1403
HpyCH4III ACNGT 5 cut(s) 145, 550, 564, 766, 1135
HpyCH4IV ACGT 3 cut(s) 49, 394, 1452
HpyF3I CTNAG 4 cut(s) 589, 600, 1139, 1218
HpySE526I ACGT 3 cut(s) 49, 394, 1452
Hsp92II CATG 9 cut(s) 153, 157, 340, 540, 888, 983, 1162, 1240, 1302
Kzo9I GATC 5 cut(s) 262, 430, 477, 826, 1295
LmnI GCTCC 8 cut(s) 213, 237, 310, 356, 857, 1073, 1091, 1375
Lsp1109I GCAGC 7 cut(s) 200, 466, 605, 608, 767, 1037, 1252
LweI GCATC 6 cut(s) 25, 73, 166, 811, 931, 1048
MaeI CTAG 1 cut(s) 225
MaeII ACGT 3 cut(s) 49, 394, 1452
MaeIII GTNAC 4 cut(s) 220, 346, 997, 1154
MalI GATC 5 cut(s) 264, 432, 479, 828, 1297
MboI GATC 5 cut(s) 262, 430, 477, 826, 1295
MboII GAAGA 2 cut(s) 296, 395
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 826
MluCI AATT 5 cut(s) 411, 666, 932, 1353, 1443
MlyI GAGTC 1 cut(s) 1052
MmeI TCCRAC 1 cut(s) 712
Mph1103I ATGCAT 3 cut(s) 88, 155, 202
MroXI GAANNNNTTC 1 cut(s) 658
MseI TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
MspA1I CMGCKG 2 cut(s) 599, 758
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 4 cut(s) 308, 630, 1004, 1460
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 3 cut(s) 308, 1004, 1460
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 88
NdeII GATC 5 cut(s) 262, 430, 477, 826, 1295
NlaIII CATG 9 cut(s) 153, 157, 340, 540, 888, 983, 1162, 1240, 1302
NlaIV GGNNCC 4 cut(s) 1008, 1093, 1371, 1414
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 4 cut(s) 220, 346, 997, 1154
NsiI ATGCAT 3 cut(s) 88, 155, 202
NspI RCATGY 2 cut(s) 540, 888
PasI CCCWGGG 1 cut(s) 1003
PciI ACATGT 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 1300
PctI GAATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 7 cut(s) 190, 456, 595, 598, 757, 1027, 1267
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1051
Ppu21I YACGTR 2 cut(s) 50, 1453
PpuMI RGGWCCY 1 cut(s) 1007
PscI ACATGT 1 cut(s) 884
Psp5II RGGWCCY 1 cut(s) 1007
Psp6I CCWGG 3 cut(s) 306, 1002, 1458
PspEI GGTNACC 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 118, 758
PspGI CCWGG 3 cut(s) 306, 1002, 1458
PspN4I GGNNCC 4 cut(s) 1008, 1093, 1371, 1414
PspPI GGNCC 3 cut(s) 524, 1007, 1187
PspPPI RGGWCCY 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 2 cut(s) 125, 599
PsuI RGATCY 1 cut(s) 826
PvuI CGATCG 1 cut(s) 433
PvuII CAGCTG 2 cut(s) 599, 758
RsaI GTAC 5 cut(s) 260, 547, 912, 1032, 1290
RsaNI GTAC 5 cut(s) 259, 546, 911, 1031, 1289
SaqAI TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
SatI GCNGC 7 cut(s) 189, 455, 594, 597, 756, 1026, 1266
Sau3AI GATC 5 cut(s) 262, 430, 477, 826, 1295
Sau96I GGNCC 3 cut(s) 524, 1007, 1187
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 4 cut(s) 308, 630, 1004, 1460
SfaNI GCATC 6 cut(s) 25, 73, 166, 811, 931, 1048
SfcI CTRYAG 4 cut(s) 102, 186, 459, 1131
SinI GGWCC 3 cut(s) 524, 1007, 1187
SnaBI TACGTA 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 5 cut(s) 411, 666, 932, 1353, 1443
SsiI CCGC 4 cut(s) 514, 626, 692, 1234
SspI AATATT 1 cut(s) 1436
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 306, 628, 1002, 1458
StyI CCWWGG 3 cut(s) 336, 485, 1108
TaaI ACNGT 5 cut(s) 145, 550, 564, 766, 1135
TaiI ACGT 3 cut(s) 52, 397, 1455
TaqI TCGA 2 cut(s) 369, 433
TasI AATT 5 cut(s) 411, 666, 932, 1353, 1443
TatI WGTACW 3 cut(s) 545, 1030, 1288
Tru1I TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
Tru9I TTAA 7 cut(s) 248, 449, 558, 768, 1013, 1352, 1446
TscAI CASTG 2 cut(s) 555, 1147
TseFI GTSAC 4 cut(s) 220, 346, 997, 1154
TseI GCWGC 7 cut(s) 188, 454, 593, 596, 755, 1025, 1265
Tsp45I GTSAC 4 cut(s) 220, 346, 997, 1154
TspDTI ATGAA 5 cut(s) 355, 942, 1035, 1359, 1446
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 2 cut(s) 555, 1147
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 3 cut(s) 524, 1007, 1187
XagI CCTNNNNNAGG 1 cut(s) 1377
XapI RAATTY 1 cut(s) 932
XceI RCATGY 2 cut(s) 540, 888
XcmI CCANNNNNNNNNTGG 2 cut(s) 977, 1423
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 1 cut(s) 225
Zsp2I ATGCAT 3 cut(s) 88, 155, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.