Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011388

Physical Location & Seq

Genomic Coordinates Reverse (-)

29940803 .. 29943713

Gene Structure 2911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGATAGGGTCGTCATCCACGGTGGCTGGCGGAGGACAGCTTTCGGTGCCTCCGGGATTCCGGTTTCATCCAACGGAGGAGGAGCTTCTTTACTATTACCTCAAGAAGAAGGTTTCTTATGAACCAATTGATTTAGATGTAATTAGAGAAGTTGATCTCAACAAGCTGGAACCTTGGGAACTTAAAGAGAAATGCAGAATCGGGTCGGGTCCTCAAAACGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACCGGGCGACAGCAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTCAACAGCTCCAAGAAGATTGGACTTCGTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGGAAGATGGGTGGGTTGTATGCAGAGTGTTCAAGAAGAAGAATCATTTCAGAGGATTTCACCAAGAACAAGAGCAAGATCATCATCATCATCACCAATACATAAGCACCAACAATGATCATGATCACCATCATCACATTGACTCCAATTCAAACAATCATTCTCCTTTGATCCTACATCCTCTGGATCATCATCACCACCATCATCACATTGGACGACAAATCCACATGCCATTACATGAGTTTGCAAACACTCTGAGCCATGGCTCAATGCATCTACCTCAGCTCTTTAGCCCTGACTCAGCTGCAGCGGCGGCTGCCGCAGCAGCATCAGCCCAACCATTTGTGTCGCCAATCAACACTACGGACATTGAATGTTCACAGAATCTACTGAGGTTGACTTCTAACAACAACTATGGTGGAGACTGGTCGTTTCTGGACAAGCTTCTCACTACAGGCAACATGAATCAGCAACAGCAGCAGCAAGTGCAGAACCATCAAGCAAAATGTTTTGGTGACTTGAGTAACAACGATAATAACGATCAGGCTGATCATTTGGGTAACAACAATGGTGGTTCTTCTTCATCTCCAGTTAATCAAAGGTTTCCGTTTCACTACTTGGGAAACGACGCTAATCTTCTCAAGTTCCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

371

Amino Acids

42.38

Weight (kDa)

6.71

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	18 - 146	4.4e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca	FvH4_3g13550
malus_domestica	MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica	Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis	pycom05g21770 pycom10g18650
rosa_chinensis	RchiOBHm_Chr5g0022511
rosa_laevigata	RLG00000032667
rosa_multiflora	Rmu_sc0011329.1_g000004
rosa_rugosa	Rorug05G0074400
rosa_samantha	Rh5AG161200 Rh5CG174500
rosa_wichuraiana	Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	4 cut(s)	33, 770, 773, 780
AclWI	GGATC	3 cut(s)	425, 625, 654
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	493, 612, 833
AluBI	AGCT	8 cut(s)	43, 88, 169, 308, 342, 745, 764, 904
AluI	AGCT	8 cut(s)	43, 88, 169, 308, 342, 745, 764, 904
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	312, 876
AlwI	GGATC	3 cut(s)	425, 625, 654
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	8 cut(s)	290, 764, 767, 776, 782, 785, 937, 940
ApoI	RAATTY	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	212, 267
AsuC2I	CCSGG	3 cut(s)	57, 281, 295
AsuHPI	GGTGA	5 cut(s)	512, 545, 578, 647, 986
AvaII	GGWCC	2 cut(s)	212, 267
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	8 cut(s)	302, 751, 763, 779, 794, 797, 949, 952
BccI	CCATC	4 cut(s)	461, 597, 669, 963
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BclI	TGATCA	3 cut(s)	577, 583, 1009
BcnI	CCSGG	3 cut(s)	57, 281, 295
BcoDI	GTCTC	2 cut(s)	312, 876
BfmI	CTRYAG	2 cut(s)	765, 912
Bme1390I	CCNGG	3 cut(s)	57, 281, 295
Bme18I	GGWCC	2 cut(s)	212, 267
BmgT120I	GGNCC	2 cut(s)	212, 267
BmiI	GGNNCC	5 cut(s)	51, 174, 213, 268, 269
BmrFI	CCNGG	3 cut(s)	57, 281, 295
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	742, 797
BmuI	ACTGGG	1 cut(s)	273
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	3 cut(s)	89, 1000, 1085
BpuMI	CCSGG	3 cut(s)	57, 281, 295
BsaBI	GATNNNNATC	4 cut(s)	543, 582, 588, 651
BsaJI	CCNNGG	3 cut(s)	21, 176, 721
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	5 cut(s)	268, 316, 388, 890, 1049
Bse8I	GATNNNNATC	4 cut(s)	543, 582, 588, 651
BseDI	CCNNGG	3 cut(s)	21, 176, 721
BseGI	GGATG	3 cut(s)	17, 70, 637
BseJI	GATNNNNATC	4 cut(s)	543, 582, 588, 651
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	707, 755, 774, 842
BseNI	ACTGG	5 cut(s)	268, 316, 388, 890, 1049
BseRI	GAGGAG	3 cut(s)	95, 98, 384
BseXI	GCAGC	8 cut(s)	302, 751, 763, 779, 794, 797, 949, 952
BsgI	GTGCAG	1 cut(s)	968
BshFI	GGCC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	4 cut(s)	56, 64, 280, 294
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	312, 876
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
Bsp19I	CCATGG	1 cut(s)	721
BspACI	CCGC	4 cut(s)	33, 770, 773, 780
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	4 cut(s)	708, 754, 773, 843
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	5 cut(s)	51, 174, 213, 268, 269
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	3 cut(s)	425, 625, 654
BspT107I	GGYRCC	1 cut(s)	49
BsrI	ACTGG	5 cut(s)	268, 316, 388, 890, 1049
BssECI	CCNNGG	3 cut(s)	21, 176, 721
BssMI	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
BssT1I	CCWWGG	2 cut(s)	176, 721
Bst4CI	ACNGT	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	946
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	4 cut(s)	716, 741, 760, 851
BstDSI	CCRYGG	2 cut(s)	21, 721
BstF5I	GGATG	3 cut(s)	17, 70, 637
BstKTI	GATC	9 cut(s)	160, 420, 541, 580, 586, 633, 649, 1003, 1012
BstMAI	GTCTC	2 cut(s)	312, 876
BstMBI	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
BstNSI	RCATGY	1 cut(s)	691
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	55, 279, 293
BstSFI	CTRYAG	2 cut(s)	765, 912
BstV1I	GCAGC	8 cut(s)	302, 751, 763, 779, 794, 797, 949, 952
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	2 cut(s)	21, 721
BtsCI	GGATG	3 cut(s)	17, 70, 637
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	31
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	212, 267
CseI	GACGC	1 cut(s)	1097
CspCI	CAANNNNNGTGG	6 cut(s)	206, 241, 859, 894, 1012, 1047
CviAII	CATG	7 cut(s)	398, 421, 581, 688, 698, 722, 922
DdeI	CTNAG	4 cut(s)	716, 741, 760, 851
DpnI	GATC	9 cut(s)	159, 419, 540, 579, 585, 632, 648, 1002, 1011
DpnII	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
EaeI	YGGCCR	1 cut(s)	400
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	176, 721
Eco47I	GGWCC	2 cut(s)	212, 267
EcoO109I	RGGNCCY	2 cut(s)	212, 267
EcoT14I	CCWWGG	2 cut(s)	176, 721
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	2 cut(s)	176, 721
FaeI	CATG	7 cut(s)	401, 424, 584, 691, 701, 725, 925
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	7 cut(s)	397, 420, 580, 687, 697, 721, 921
FbaI	TGATCA	3 cut(s)	577, 583, 1009
FokI	GGATG	3 cut(s)	4, 57, 624
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	4 cut(s)	56, 64, 280, 294
HgaI	GACGC	1 cut(s)	1097
Hin1II	CATG	7 cut(s)	401, 424, 584, 691, 701, 725, 925
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	8 cut(s)	60, 201, 367, 502, 602, 758, 844, 925
HpaII	CCGG	4 cut(s)	56, 64, 280, 294
HphI	GGTGA	5 cut(s)	512, 545, 578, 647, 986
Hpy166II	GTNNAC	2 cut(s)	839, 858
Hpy188I	TCNGA	3 cut(s)	261, 512, 717
Hpy188III	TCNNGA	7 cut(s)	106, 301, 461, 493, 581, 644, 896
Hpy8I	GTNNAC	2 cut(s)	839, 858
Hpy99I	CGWCG	1 cut(s)	1091
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	7 cut(s)	198, 424, 483, 707, 733, 767, 949
HpyF3I	CTNAG	4 cut(s)	716, 741, 760, 851
Hsp92II	CATG	7 cut(s)	401, 424, 584, 691, 701, 725, 925
KflI	GGGWCCC	1 cut(s)	267
Ksp22I	TGATCA	3 cut(s)	577, 583, 1009
Kzo9I	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
LmnI	GCTCC	3 cut(s)	85, 347, 397
Lsp1109I	GCAGC	8 cut(s)	302, 751, 763, 779, 794, 797, 949, 952
LweI	GCATC	2 cut(s)	742, 797
MaeIII	GTNAC	3 cut(s)	974, 983, 1019
MalI	GATC	9 cut(s)	159, 419, 540, 579, 585, 632, 648, 1002, 1011
MboI	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
MboII	GAAGA	9 cut(s)	121, 361, 367, 476, 508, 511, 1029, 1032, 1088
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	129, 144, 456, 607
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	361, 596, 752
MmeI	TCCRAC	2 cut(s)	98, 284
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	186, 1053
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	764, 770
MspI	CCGG	4 cut(s)	56, 64, 280, 294
MspR9I	CCNGG	3 cut(s)	57, 281, 295
MunI	CAATTG	1 cut(s)	129
NciI	CCSGG	3 cut(s)	57, 281, 295
NcoI	CCATGG	1 cut(s)	721
NdeII	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
NlaIII	CATG	7 cut(s)	401, 424, 584, 691, 701, 725, 925
NlaIV	GGNNCC	5 cut(s)	51, 174, 213, 268, 269
NmuCI	GTSAC	1 cut(s)	974
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	1 cut(s)	691
PagI	TCATGA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	281, 996
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	5 cut(s)	60, 201, 502, 844, 925
PfoI	TCCNGGA	1 cut(s)	55
PleI	GAGTC	3 cut(s)	361, 596, 752
PpsI	GAGTC	3 cut(s)	361, 596, 752
PpuMI	RGGWCCY	2 cut(s)	212, 267
PshAI	GACNNNNGTC	1 cut(s)	371
Psp5II	RGGWCCY	2 cut(s)	212, 267
PspN4I	GGNNCC	5 cut(s)	51, 174, 213, 268, 269
PspPI	GGNCC	2 cut(s)	212, 267
PspPPI	RGGWCCY	2 cut(s)	212, 267
PstI	CTGCAG	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	186, 1053
Sau3AI	GATC	9 cut(s)	157, 417, 538, 577, 583, 630, 646, 1000, 1009
Sau96I	GGNCC	2 cut(s)	212, 267
SchI	GAGTC	3 cut(s)	361, 596, 752
ScrFI	CCNGG	3 cut(s)	57, 281, 295
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	2 cut(s)	742, 797
SfcI	CTRYAG	2 cut(s)	765, 912
SinI	GGWCC	2 cut(s)	212, 267
SmlI	CTYRAG	3 cut(s)	104, 979, 1100
SmoI	CTYRAG	3 cut(s)	104, 979, 1100
Sse9I	AATT	4 cut(s)	129, 144, 456, 607
SsiI	CCGC	4 cut(s)	33, 770, 773, 780
StyD4I	CCNGG	3 cut(s)	55, 279, 293
StyI	CCWWGG	2 cut(s)	176, 721
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	4 cut(s)	129, 144, 456, 607
TauI	GCSGC	3 cut(s)	773, 776, 782
TfiI	GAWTC	5 cut(s)	60, 201, 502, 844, 925
Tru1I	TTAA	2 cut(s)	186, 1053
Tru9I	TTAA	2 cut(s)	186, 1053
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	8 cut(s)	290, 764, 767, 776, 782, 785, 937, 940
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	4 cut(s)	59, 138, 938, 1032
TspGWI	ACGGA	3 cut(s)	92, 839, 1056
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	212, 267
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.