Rh5CG174500
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
16774304 .. 16777189
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG174500.1

Sequence Viewer

Length: 1083 bp
ATGATGTCTGCAGGCAATGGACAGCTGACTGTTCCTCCTGGCTTCCGATTCCATCCAACGGACGAGGAGCTTCTCTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATCGACCTTGATGTTATTAGGGAGGTCGATCTCAACAAACTTGAACCCTGGGACCTTAAAGAGAAATGCAGAATAGGATCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCAACAGGAACTAGAACAAACCGAGCAACTACAGCTGGGTTTTGGAAGGCAACTGGGAGAGATAAAGCCATCCACCTCAGCGATTCCAAGAGGATTGGAATGAGGAAAACCCTAGTCTTCTACACCGGCCGCGCTCCTCATGGCCAAAAGACTGACTGGATCATGCACGAGTATCGCCTTGAAGATCATCATGATAATATTAATGTCCATGAAGTTCAGGAGGACGGATGGGTGGTTTGTAGGGTTTTCAAGAAGAAGAATCACATTAACAGAGGTTTTCAGCCAGAGTTTGGTCATCATCAAGAAGTAGAACATGACTTGATCACGCACATGAAGGCAAGTGGTTCTCATGCCCAAGTAGTACTAGACCATCATCAGCCAAAACAAAACCATCACCACCATCTGGAAGCTTCACTGTATGATTACCCTAACACTTTCGATGGTTCGATGCACCTGCCGCAGTTGTTCAGTCCAGAGTCCGCAGCTGCTGCAGCAGCTAATAATTCATCATCATTTCTATCTGCACCTAATACCAATATGTCGGCTTTGAACCCCCTGGACTTGGAGTGCTCTCAAAACCTGTTGAAGCTAACCTCCACCACGGCCGGTTCTTGTGGACTCAATATGCAACAGCAACAGCAGCAGCAGGAGATGAGGTCGTTCAATGGTGATTGGTCCTTCTTGGACAAGCTCCTCCAATCTCATCACCCTCAGCCCCAGGATCATTATCATGTGGCCACTGCCGCCGCTACTACTTCAACAACGCAGAGATTATTTCCATTTCAATACCTTGGCTGCAGCGGGTCAACTACTCATGTCGACATTTTAAAGTTCTCCAAGTAG

Protein Analysis

360

Amino Acids

41.15

Weight (kDa)

6.96

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 140 1e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011388)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 702
AccB7I CCANNNNNTGG 2 cut(s) 530, 643
AccI GTMKAC 1 cut(s) 1059
AccII CGCG 1 cut(s) 372
AciI CCGC 6 cut(s) 370, 698, 720, 984, 987, 1041
AclWI GGATC 3 cut(s) 196, 407, 969
AcoI YGGCCR 4 cut(s) 367, 382, 843, 975
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 2 cut(s) 212, 603
AfiI CCNNNNNNNGG 4 cut(s) 58, 530, 643, 802
AgsI TTSAA 8 cut(s) 155, 422, 490, 790, 826, 904, 999, 1025
AjnI CCWGG 4 cut(s) 37, 158, 795, 957
AluBI AGCT 8 cut(s) 25, 70, 275, 650, 725, 737, 829, 931
AluI AGCT 8 cut(s) 25, 70, 275, 650, 725, 737, 829, 931
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 3 cut(s) 196, 407, 969
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 5 cut(s) 194, 367, 382, 843, 975
ApeKI GCWGC 9 cut(s) 722, 725, 728, 731, 734, 880, 883, 1035, 1038
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 3 cut(s) 163, 194, 915
AsuHPI GGTGA 3 cut(s) 626, 920, 938
AvaII GGWCC 2 cut(s) 163, 915
AxyI CCTNAGG 1 cut(s) 86
BalI TGGCCA 2 cut(s) 384, 977
BauI CACGAG 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 812
BbvCI CCTCAGC 2 cut(s) 317, 951
BbvI GCAGC 9 cut(s) 712, 715, 734, 743, 746, 892, 895, 1022, 1050
BccI CCATC 8 cut(s) 60, 119, 317, 462, 618, 639, 648, 674
BceAI ACGGC 1 cut(s) 858
BcgI CGANNNNNNTGC 4 cut(s) 395, 429, 676, 710
BciT130I CCWGG 4 cut(s) 39, 160, 797, 959
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 3 cut(s) 252, 353, 605
BfmI CTRYAG 4 cut(s) 9, 270, 729, 1036
BfuAI ACCTGC 1 cut(s) 702
BfuI GTATCC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 4 cut(s) 39, 160, 797, 959
Bme18I GGWCC 2 cut(s) 163, 915
BmgT120I GGNCC 3 cut(s) 163, 194, 915
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 4 cut(s) 39, 160, 797, 959
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 678
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 349
Bpu10I CCTNAGC 2 cut(s) 317, 951
BsaBI GATNNNNATC 1 cut(s) 966
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 6 cut(s) 158, 159, 795, 840, 957, 1030
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 881, 911
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 530, 643, 802
Bse118I RCCGGY 2 cut(s) 365, 845
Bse1I ACTGG 2 cut(s) 298, 401
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 4 cut(s) 39, 160, 797, 959
BseDI CCNNGG 6 cut(s) 158, 159, 795, 840, 957, 1030
BseGI GGATG 3 cut(s) 52, 309, 473
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 4 cut(s) 58, 530, 643, 802
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 4 cut(s) 100, 212, 331, 965
BseNI ACTGG 2 cut(s) 298, 401
BseRI GAGGAG 3 cut(s) 80, 366, 923
BseX3I CGGCCG 2 cut(s) 367, 843
BseXI GCAGC 9 cut(s) 712, 715, 734, 743, 746, 892, 895, 1022, 1050
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 370, 846
BshFI GGCC 5 cut(s) 196, 369, 384, 845, 977
BsiEI CGRYCG 2 cut(s) 370, 846
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 2 cut(s) 366, 846
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 58, 530, 643, 802
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 5 cut(s) 196, 369, 384, 845, 977
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 812
Bsp143I GATC 6 cut(s) 139, 188, 399, 424, 561, 961
BspACI CCGC 6 cut(s) 370, 698, 720, 984, 987, 1041
BspANI GGCC 5 cut(s) 196, 369, 384, 845, 977
BspCNI CTCAG 4 cut(s) 99, 211, 330, 964
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 164
BspMAI CTGCAG 3 cut(s) 13, 733, 1040
BspMI ACCTGC 1 cut(s) 702
BspPI GGATC 3 cut(s) 196, 407, 969
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 2 cut(s) 365, 845
BsrI ACTGG 2 cut(s) 298, 401
BssAI RCCGGY 2 cut(s) 365, 845
BssECI CCNNGG 6 cut(s) 158, 159, 795, 840, 957, 1030
BssMI GATC 6 cut(s) 139, 188, 399, 424, 561, 961
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 1030
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 4 cut(s) 39, 160, 797, 959
Bst4CI ACNGT 2 cut(s) 31, 657
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 86, 198, 317, 951
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 3 cut(s) 52, 309, 473
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 6 cut(s) 142, 191, 402, 427, 564, 964
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 6 cut(s) 139, 188, 399, 424, 561, 961
BstMCI CGRYCG 2 cut(s) 370, 846
BstMWI GCNNNNNNNGC 7 cut(s) 272, 697, 728, 731, 734, 880, 983
BstNI CCWGG 4 cut(s) 39, 160, 797, 959
BstSCI CCNGG 4 cut(s) 37, 158, 795, 957
BstSFI CTRYAG 4 cut(s) 9, 270, 729, 1036
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 9 cut(s) 712, 715, 734, 743, 746, 892, 895, 1022, 1050
BstV2I GAAGAC 1 cut(s) 349
BstZI CGGCCG 2 cut(s) 367, 843
Bsu36I CCTNAGG 1 cut(s) 86
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 5 cut(s) 196, 369, 384, 845, 977
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 3 cut(s) 52, 309, 473
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 2 cut(s) 653, 978
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 728
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 365, 845
Cfr13I GGNCC 3 cut(s) 163, 194, 915
Csp6I GTAC 2 cut(s) 211, 602
CviAII CATG 9 cut(s) 380, 403, 431, 449, 554, 571, 590, 971, 1055
CviQI GTAC 2 cut(s) 211, 602
DdeI CTNAG 4 cut(s) 86, 198, 317, 951
DpnI GATC 6 cut(s) 141, 190, 401, 426, 563, 963
DpnII GATC 6 cut(s) 139, 188, 399, 424, 561, 961
DraI TTTAAA 1 cut(s) 1068
EaeI YGGCCR 4 cut(s) 367, 382, 843, 975
EagI CGGCCG 2 cut(s) 367, 843
EclXI CGGCCG 2 cut(s) 367, 843
Eco130I CCWWGG 1 cut(s) 1030
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 163, 915
Eco52I CGGCCG 2 cut(s) 367, 843
Eco57I CTGAAG 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 86
EcoO109I RGGNCCY 2 cut(s) 163, 194
EcoRII CCWGG 4 cut(s) 37, 158, 795, 957
EcoT14I CCWWGG 1 cut(s) 1030
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 9 cut(s) 383, 406, 434, 452, 557, 574, 593, 974, 1058
FaqI GGGAC 1 cut(s) 176
FatI CATG 9 cut(s) 379, 402, 430, 448, 553, 570, 589, 970, 1054
FauI CCCGC 1 cut(s) 1034
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 1059
FokI GGATG 3 cut(s) 39, 296, 480
FspBI CTAG 3 cut(s) 252, 353, 605
GlaI GCGC 1 cut(s) 373
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 5 cut(s) 196, 369, 384, 845, 977
HapII CCGG 2 cut(s) 366, 846
HhaI GCGC 1 cut(s) 374
Hin1II CATG 9 cut(s) 383, 406, 434, 452, 557, 574, 593, 974, 1058
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 2 cut(s) 1047, 1060
HindII GTYRAC 2 cut(s) 1047, 1060
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 5 cut(s) 48, 323, 499, 716, 858
HpaII CCGG 2 cut(s) 366, 846
HphI GGTGA 3 cut(s) 626, 920, 938
Hpy166II GTNNAC 3 cut(s) 857, 1047, 1060
Hpy188I TCNGA 2 cut(s) 47, 201
Hpy188III TCNNGA 7 cut(s) 88, 431, 458, 490, 542, 644, 713
Hpy8I GTNNAC 3 cut(s) 857, 1047, 1060
HpyAV CCTTC 4 cut(s) 88, 280, 568, 928
HpyCH4III ACNGT 2 cut(s) 31, 657
HpyCH4V TGCA 8 cut(s) 11, 180, 406, 691, 731, 764, 868, 1038
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 697, 728, 731, 734, 880, 983
HpyF3I CTNAG 4 cut(s) 86, 198, 317, 951
Hsp92II CATG 9 cut(s) 383, 406, 434, 452, 557, 574, 593, 974, 1058
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 6 cut(s) 139, 188, 399, 424, 561, 961
LmnI GCTCC 3 cut(s) 67, 379, 936
Lsp1109I GCAGC 9 cut(s) 712, 715, 734, 743, 746, 892, 895, 1022, 1050
LweI GCATC 1 cut(s) 678
MaeI CTAG 3 cut(s) 252, 353, 605
MalI GATC 6 cut(s) 141, 190, 401, 426, 563, 963
MboI GATC 6 cut(s) 139, 188, 399, 424, 561, 961
MboII GAAGA 6 cut(s) 103, 208, 349, 434, 505, 508
MhlI GDGCHC 1 cut(s) 812
MlsI TGGCCA 2 cut(s) 384, 977
MluCI AATT 1 cut(s) 742
MluNI TGGCCA 2 cut(s) 384, 977
MlyI GAGTC 2 cut(s) 725, 852
MmeI TCCRAC 2 cut(s) 80, 266
Mox20I TGGCCA 2 cut(s) 384, 977
MscI TGGCCA 2 cut(s) 384, 977
MseI TTAA 4 cut(s) 168, 441, 507, 1067
MslI CAYNNNNRTG 2 cut(s) 569, 969
Msp20I TGGCCA 2 cut(s) 384, 977
MspA1I CMGCKG 4 cut(s) 25, 275, 725, 1041
MspI CCGG 2 cut(s) 366, 846
MspR9I CCNGG 4 cut(s) 39, 160, 797, 959
MvaI CCWGG 4 cut(s) 39, 160, 797, 959
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 7 cut(s) 272, 697, 728, 731, 734, 880, 983
NdeII GATC 6 cut(s) 139, 188, 399, 424, 561, 961
NlaIII CATG 9 cut(s) 383, 406, 434, 452, 557, 574, 593, 974, 1058
NlaIV GGNNCC 1 cut(s) 164
PagI TCATGA 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 702
PasI CCCWGGG 1 cut(s) 159
PfeI GAWTC 3 cut(s) 48, 323, 499
PflMI CCANNNNNTGG 2 cut(s) 530, 643
PleI GAGTC 2 cut(s) 724, 852
PpsI GAGTC 2 cut(s) 724, 852
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 4 cut(s) 37, 158, 795, 957
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 4 cut(s) 37, 158, 795, 957
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 163, 194, 915
PspPPI RGGWCCY 1 cut(s) 163
PstI CTGCAG 3 cut(s) 13, 733, 1040
PstNI CAGNNNCTG 1 cut(s) 728
PvuII CAGCTG 3 cut(s) 25, 275, 725
RsaI GTAC 2 cut(s) 212, 603
RsaNI GTAC 2 cut(s) 211, 602
RseI CAYNNNNRTG 2 cut(s) 569, 969
SalI GTCGAC 1 cut(s) 1058
SaqAI TTAA 4 cut(s) 168, 441, 507, 1067
Sau3AI GATC 6 cut(s) 139, 188, 399, 424, 561, 961
Sau96I GGNCC 3 cut(s) 163, 194, 915
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 2 cut(s) 725, 852
ScrFI CCNGG 4 cut(s) 39, 160, 797, 959
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 4 cut(s) 9, 270, 729, 1036
SinI GGWCC 2 cut(s) 163, 915
SmiMI CAYNNNNRTG 2 cut(s) 569, 969
Sse9I AATT 1 cut(s) 742
SsiI CCGC 6 cut(s) 370, 698, 720, 984, 987, 1041
SspI AATATT 1 cut(s) 439
SspMI CTAG 3 cut(s) 252, 353, 605
StyD4I CCNGG 4 cut(s) 37, 158, 795, 957
StyI CCWWGG 1 cut(s) 1030
TaaI ACNGT 2 cut(s) 31, 657
TaqI TCGA 5 cut(s) 114, 138, 678, 686, 1059
TasI AATT 1 cut(s) 742
TatI WGTACW 1 cut(s) 601
TauI GCSGC 4 cut(s) 372, 700, 986, 989
TfiI GAWTC 3 cut(s) 48, 323, 499
Tru1I TTAA 4 cut(s) 168, 441, 507, 1067
Tru9I TTAA 4 cut(s) 168, 441, 507, 1067
TscAI CASTG 2 cut(s) 660, 985
TseI GCWGC 9 cut(s) 722, 725, 728, 731, 734, 880, 883, 1035, 1038
TspDTI ATGAA 4 cut(s) 120, 465, 587, 735
TspGWI ACGGA 2 cut(s) 74, 480
TspRI CASTG 2 cut(s) 660, 985
Van91I CCANNNNNTGG 2 cut(s) 530, 643
VpaK11BI GGWCC 2 cut(s) 163, 915
VspI ATTAAT 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 1059
XspI CTAG 3 cut(s) 252, 353, 605
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.