Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011388

Physical Location & Seq

Genomic Coordinates Forward (+)

17314932 .. 17317832

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGTCTACAGGCAATGGACAGCTGACTGTTCCTCCTGGCTTCCGATTCCATCCAACGGACGAGGAGCTTCTCTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATCGACCTTGATGTTATTAGGGAGGTCGATCTCAACAAACTTGAACCCTGGGACCTTAAAGAGAAATGCAGAATAGGATCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCAACAGGAACTAGAACAAACCGAGCAACTACAGCTGGGTTTTGGAAGGCAACTGGGAGAGATAAAGCCATCCACCTCAGCGATTCCAAGAGGATTGGAATGAGGAAAACCCTAGTCTTCTACACCGGCCGCGCTCCTCATGGCCAAAAGACTGACTGGATCATGCACGAGTATCGCCTTGAAGATCATCATGATAATATTAATGTCCATGAAGTTCAGGAGGACGGATGGGTGGTTTGTAGGGTTTTCAAGAAGAAGAATCACATTAACAGAGGTTTTCAGCCAGAGTTTGGTCATCATCAAGAAGTAGAACATGACTTGATCACGCACATGAAGGCAAGTGGTTCTCATGCCCAAGTAGTACTAGACCATCATCATCATCATCAGCCAAAACAAAACCATCACCACCATCTGGAAGCTTCACTGTATGATTACCCTAACACTTTCGATGGTTCGATGCACCTGCCGCAGTTGTTCAGTCCAGAGTCCGCAGCTGCTGCAGCAGCTAATAATTCATCATCGTTTCTATCTGCACCTAATACCAATATGTCGGCTTTGAACCCCCTGGACTTGGAGTGCTCTCAAAACCTGTTGAAGCTAACCTCCACCACGGCCGGTTCTTGTGGACTCAATATGCAACAGCAACAGCAGCAGCAGGAGATGAGGTCGTTCAATGGTGATTGGTCATTCTTGGACAAGCTCCTCCAATCTCATCACCCTCAGCCCCAGGATCATCATCATGTGGCCACTGCCGCCGCTACTACTTCAACAACGCAGAGATTATTTCCATTTCAATACCTTGGCTGCAGCGGATCAACTACTCATGTCGACATTTTAAAGTTCTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

363

Amino Acids

41.56

Weight (kDa)

7.02

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 140	1.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca	FvH4_3g13550
malus_domestica	MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica	Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis	pycom05g21770 pycom10g18650
rosa_chinensis	RchiOBHm_Chr5g0022511
rosa_laevigata	RLG00000032667
rosa_multiflora	Rmu_sc0011329.1_g000004
rosa_rugosa	Rorug05G0074400
rosa_samantha	Rh5AG161200 Rh5CG174500
rosa_wichuraiana	Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	711
AccB7I	CCANNNNNTGG	2 cut(s)	530, 652
AccI	GTMKAC	2 cut(s)	8, 1068
AccII	CGCG	1 cut(s)	372
AciI	CCGC	6 cut(s)	370, 707, 729, 993, 996, 1050
AclWI	GGATC	4 cut(s)	196, 407, 978, 1060
AcoI	YGGCCR	4 cut(s)	367, 382, 852, 984
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	2 cut(s)	212, 603
AfiI	CCNNNNNNNGG	4 cut(s)	58, 530, 652, 811
AgsI	TTSAA	8 cut(s)	155, 422, 490, 799, 835, 913, 1008, 1034
AjnI	CCWGG	4 cut(s)	37, 158, 804, 966
AluBI	AGCT	8 cut(s)	25, 70, 275, 659, 734, 746, 838, 940
AluI	AGCT	8 cut(s)	25, 70, 275, 659, 734, 746, 838, 940
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	4 cut(s)	196, 407, 978, 1060
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	5 cut(s)	194, 367, 382, 852, 984
ApeKI	GCWGC	9 cut(s)	731, 734, 737, 740, 743, 889, 892, 1044, 1047
AseI	ATTAAT	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	163, 194
AsuHPI	GGTGA	3 cut(s)	635, 929, 947
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	2 cut(s)	384, 986
BauI	CACGAG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	821
BbvCI	CCTCAGC	2 cut(s)	317, 960
BbvI	GCAGC	9 cut(s)	721, 724, 743, 752, 755, 901, 904, 1031, 1059
BccI	CCATC	8 cut(s)	60, 119, 317, 462, 618, 648, 657, 683
BceAI	ACGGC	1 cut(s)	867
BcgI	CGANNNNNNTGC	4 cut(s)	395, 429, 685, 719
BciT130I	CCWGG	4 cut(s)	39, 160, 806, 968
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	252, 353, 605
BfmI	CTRYAG	4 cut(s)	9, 270, 738, 1045
BfuAI	ACCTGC	1 cut(s)	711
BfuI	GTATCC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	4 cut(s)	39, 160, 806, 968
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	163, 194
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	4 cut(s)	39, 160, 806, 968
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	687
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	349
Bpu10I	CCTNAGC	2 cut(s)	317, 960
BsaBI	GATNNNNATC	1 cut(s)	975
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	6 cut(s)	158, 159, 804, 849, 966, 1039
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 890, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 530, 652, 811
Bse118I	RCCGGY	2 cut(s)	365, 854
Bse1I	ACTGG	2 cut(s)	298, 401
Bse21I	CCTNAGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	975
BseBI	CCWGG	4 cut(s)	39, 160, 806, 968
BseDI	CCNNGG	6 cut(s)	158, 159, 804, 849, 966, 1039
BseGI	GGATG	3 cut(s)	52, 309, 473
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	4 cut(s)	58, 530, 652, 811
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	4 cut(s)	100, 212, 331, 974
BseNI	ACTGG	2 cut(s)	298, 401
BseRI	GAGGAG	3 cut(s)	80, 366, 932
BseX3I	CGGCCG	2 cut(s)	367, 852
BseXI	GCAGC	9 cut(s)	721, 724, 743, 752, 755, 901, 904, 1031, 1059
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	2 cut(s)	370, 855
BshFI	GGCC	5 cut(s)	196, 369, 384, 854, 986
BsiEI	CGRYCG	2 cut(s)	370, 855
BsiHKAI	GWGCWC	1 cut(s)	821
BsiSI	CCGG	2 cut(s)	366, 855
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	4 cut(s)	58, 530, 652, 811
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	5 cut(s)	196, 369, 384, 854, 986
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
BspACI	CCGC	6 cut(s)	370, 707, 729, 993, 996, 1050
BspANI	GGCC	5 cut(s)	196, 369, 384, 854, 986
BspCNI	CTCAG	4 cut(s)	99, 211, 330, 973
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	2 cut(s)	742, 1049
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	4 cut(s)	196, 407, 978, 1060
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	2 cut(s)	365, 854
BsrI	ACTGG	2 cut(s)	298, 401
BssAI	RCCGGY	2 cut(s)	365, 854
BssECI	CCNNGG	6 cut(s)	158, 159, 804, 849, 966, 1039
BssMI	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	1039
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	4 cut(s)	39, 160, 806, 968
Bst4CI	ACNGT	2 cut(s)	31, 666
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstDEI	CTNAG	4 cut(s)	86, 198, 317, 960
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	52, 309, 473
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	7 cut(s)	142, 191, 402, 427, 564, 973, 1055
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
BstMCI	CGRYCG	2 cut(s)	370, 855
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 706, 737, 740, 743, 889, 992
BstNI	CCWGG	4 cut(s)	39, 160, 806, 968
BstSCI	CCNGG	4 cut(s)	37, 158, 804, 966
BstSFI	CTRYAG	4 cut(s)	9, 270, 738, 1045
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	9 cut(s)	721, 724, 743, 752, 755, 901, 904, 1031, 1059
BstV2I	GAAGAC	1 cut(s)	349
BstZI	CGGCCG	2 cut(s)	367, 852
Bsu36I	CCTNAGG	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	196, 369, 384, 854, 986
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	3 cut(s)	52, 309, 473
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	2 cut(s)	662, 987
BveI	ACCTGC	1 cut(s)	711
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	2 cut(s)	365, 854
Cfr13I	GGNCC	2 cut(s)	163, 194
Csp6I	GTAC	2 cut(s)	211, 602
CviAII	CATG	9 cut(s)	380, 403, 431, 449, 554, 571, 590, 980, 1064
CviQI	GTAC	2 cut(s)	211, 602
DdeI	CTNAG	4 cut(s)	86, 198, 317, 960
DpnI	GATC	7 cut(s)	141, 190, 401, 426, 563, 972, 1054
DpnII	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
DraI	TTTAAA	1 cut(s)	1077
EaeI	YGGCCR	4 cut(s)	367, 382, 852, 984
EagI	CGGCCG	2 cut(s)	367, 852
EclXI	CGGCCG	2 cut(s)	367, 852
Eco130I	CCWWGG	1 cut(s)	1039
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	2 cut(s)	367, 852
Eco57I	CTGAAG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	163, 194
EcoRII	CCWGG	4 cut(s)	37, 158, 804, 966
EcoT14I	CCWWGG	1 cut(s)	1039
ErhI	CCWWGG	1 cut(s)	1039
FaeI	CATG	9 cut(s)	383, 406, 434, 452, 557, 574, 593, 983, 1067
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	9 cut(s)	379, 402, 430, 448, 553, 570, 589, 979, 1063
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	2 cut(s)	8, 1068
FokI	GGATG	3 cut(s)	39, 296, 480
FspBI	CTAG	3 cut(s)	252, 353, 605
GlaI	GCGC	1 cut(s)	373
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	5 cut(s)	196, 369, 384, 854, 986
HapII	CCGG	2 cut(s)	366, 855
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	9 cut(s)	383, 406, 434, 452, 557, 574, 593, 983, 1067
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	5 cut(s)	48, 323, 499, 725, 867
HpaII	CCGG	2 cut(s)	366, 855
HphI	GGTGA	3 cut(s)	635, 929, 947
Hpy166II	GTNNAC	3 cut(s)	9, 866, 1069
Hpy188I	TCNGA	2 cut(s)	47, 201
Hpy188III	TCNNGA	7 cut(s)	88, 431, 458, 490, 542, 653, 722
Hpy8I	GTNNAC	3 cut(s)	9, 866, 1069
HpyAV	CCTTC	3 cut(s)	88, 280, 568
HpyCH4III	ACNGT	2 cut(s)	31, 666
HpyCH4V	TGCA	7 cut(s)	180, 406, 700, 740, 773, 877, 1047
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 706, 737, 740, 743, 889, 992
HpyF3I	CTNAG	4 cut(s)	86, 198, 317, 960
Hsp92II	CATG	9 cut(s)	383, 406, 434, 452, 557, 574, 593, 983, 1067
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
LmnI	GCTCC	3 cut(s)	67, 379, 945
Lsp1109I	GCAGC	9 cut(s)	721, 724, 743, 752, 755, 901, 904, 1031, 1059
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	3 cut(s)	252, 353, 605
MalI	GATC	7 cut(s)	141, 190, 401, 426, 563, 972, 1054
MboI	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
MboII	GAAGA	6 cut(s)	103, 208, 349, 434, 505, 508
MhlI	GDGCHC	1 cut(s)	821
MlsI	TGGCCA	2 cut(s)	384, 986
MluCI	AATT	1 cut(s)	751
MluNI	TGGCCA	2 cut(s)	384, 986
MlyI	GAGTC	2 cut(s)	734, 861
MmeI	TCCRAC	2 cut(s)	80, 266
Mox20I	TGGCCA	2 cut(s)	384, 986
MscI	TGGCCA	2 cut(s)	384, 986
MseI	TTAA	4 cut(s)	168, 441, 507, 1076
MslI	CAYNNNNRTG	2 cut(s)	569, 978
Msp20I	TGGCCA	2 cut(s)	384, 986
MspA1I	CMGCKG	4 cut(s)	25, 275, 734, 1050
MspI	CCGG	2 cut(s)	366, 855
MspR9I	CCNGG	4 cut(s)	39, 160, 806, 968
MvaI	CCWGG	4 cut(s)	39, 160, 806, 968
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	7 cut(s)	272, 706, 737, 740, 743, 889, 992
NdeII	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
NlaIII	CATG	9 cut(s)	383, 406, 434, 452, 557, 574, 593, 983, 1067
NlaIV	GGNNCC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	711
PasI	CCCWGGG	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	48, 323, 499
PflMI	CCANNNNNTGG	2 cut(s)	530, 652
PleI	GAGTC	2 cut(s)	733, 861
PpsI	GAGTC	2 cut(s)	733, 861
PpuMI	RGGWCCY	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	4 cut(s)	37, 158, 804, 966
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	4 cut(s)	37, 158, 804, 966
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	163, 194
PspPPI	RGGWCCY	1 cut(s)	163
PstI	CTGCAG	2 cut(s)	742, 1049
PstNI	CAGNNNCTG	1 cut(s)	737
PvuII	CAGCTG	3 cut(s)	25, 275, 734
RsaI	GTAC	2 cut(s)	212, 603
RsaNI	GTAC	2 cut(s)	211, 602
RseI	CAYNNNNRTG	2 cut(s)	569, 978
SalI	GTCGAC	1 cut(s)	1067
SaqAI	TTAA	4 cut(s)	168, 441, 507, 1076
Sau3AI	GATC	7 cut(s)	139, 188, 399, 424, 561, 970, 1052
Sau96I	GGNCC	2 cut(s)	163, 194
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	2 cut(s)	734, 861
ScrFI	CCNGG	4 cut(s)	39, 160, 806, 968
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	1 cut(s)	687
SfcI	CTRYAG	4 cut(s)	9, 270, 738, 1045
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	569, 978
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	6 cut(s)	370, 707, 729, 993, 996, 1050
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	3 cut(s)	252, 353, 605
StyD4I	CCNGG	4 cut(s)	37, 158, 804, 966
StyI	CCWWGG	1 cut(s)	1039
TaaI	ACNGT	2 cut(s)	31, 666
TaqI	TCGA	5 cut(s)	114, 138, 687, 695, 1068
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	4 cut(s)	372, 709, 995, 998
TfiI	GAWTC	3 cut(s)	48, 323, 499
Tru1I	TTAA	4 cut(s)	168, 441, 507, 1076
Tru9I	TTAA	4 cut(s)	168, 441, 507, 1076
TscAI	CASTG	2 cut(s)	669, 994
TseI	GCWGC	9 cut(s)	731, 734, 737, 740, 743, 889, 892, 1044, 1047
TspDTI	ATGAA	4 cut(s)	120, 465, 587, 744
TspGWI	ACGGA	2 cut(s)	74, 480
TspRI	CASTG	2 cut(s)	669, 994
Van91I	CCANNNNNTGG	2 cut(s)	530, 652
VpaK11BI	GGWCC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	441
XmiI	GTMKAC	2 cut(s)	8, 1068
XspI	CTAG	3 cut(s)	252, 353, 605
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.