FvH4_3g13550
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
8120491 .. 8123312
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13550.t1

Sequence Viewer

Length: 1092 bp
ATGATGTCTGCAGGCAATGGACAGTTGACGGTTCCTCCTGGATTTCGATTCCATCCAACGGATGAGGAGCTTCTTTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATCGACCTTGATGTTATCAGGGAGGTCGATCTCAACAAACTAGAGCCCTGGGACCTCAAAGAGAAATGCAGAATAGGATCAGGACCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCAACAGGAACTAGAACAAACCGAGCGACTACTGCTGGATTTTGGAAGGCAACTGGGAGAGACAAAGCCATCCACCTAAGCGATTCGAAGAGGATCGGAATGAGGAAAACCCTAGTCTTCTACACCGGCCGCGCTCCTCATGGTCAGAAGACTGACTGGATCATGCATGAGTATCGCCTTGAAGATCATCATGACAATGTTAACGTCCATGATGTTCAGGAGGACGGATGGGTGGTTTGTAGGGTCTTCAAGAAGAAGAATCACATTAACAGAGGTTTTCAGCCAGAGTTTGGTCATCATCAAGAAGTAGAACATGACTTGATCACACACATGAAGGCAAGCGGTTCTCATGGCCAAGTAATACTAGACCATCATCATCATCAGCTAAAACAAAACCATCAACACCATCTGGAAACTTCACTGTATGATTATCCTAACACTTTCGATGGCTCGATGCACCTGCCGCAGTTGTTCAGTCCGGAGTCAGCAGCTGCCGCAGCAGCAGCTAATAATTCATCATCATTTCTATCTGCACCTAATACCAACATGCCGGCTTTGAACCCCCTGGACTTGGAGTGCTCTCAAAACCTGTTGAAACTAACCTCCACCACGGCCGGTTCTTGTGGACTCAATATGCAACAGCAACAGCAGCAGCAGGAGATGAGGTCGTTCAATGGTGATTGGTCATTCTTGGACAAGCTTCTCCAATCTCATCATCCTCAGCCCCAAGATCACCATCATGTGGCCGCCGCCGCCGCTACTACTTCAACAACGCAGAGATTATTCCCATTTCAGTACCTTGGCTGCAGCGGATCAACTACTCATGTCGACATTTTAAAGTTCTCCAAGTAG

Protein Analysis

364

Amino Acids

41.46

Weight (kDa)

6.99

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 140 1.1e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011388)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 708
AccB7I CCANNNNNTGG 2 cut(s) 530, 982
AccI GTMKAC 1 cut(s) 1068
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 9 cut(s) 370, 582, 704, 735, 987, 990, 993, 996, 1050
AclWI GGATC 4 cut(s) 196, 341, 407, 1060
AcoI YGGCCR 4 cut(s) 367, 592, 852, 984
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 2 cut(s) 212, 1037
AfiI CCNNNNNNNGG 4 cut(s) 58, 530, 811, 982
AgsI TTSAA 6 cut(s) 422, 490, 799, 835, 913, 1008
AjnI CCWGG 3 cut(s) 37, 158, 804
AluBI AGCT 5 cut(s) 70, 625, 731, 746, 940
AluI AGCT 5 cut(s) 70, 625, 731, 746, 940
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 2 cut(s) 103, 294
AlwI GGATC 4 cut(s) 196, 341, 407, 1060
AlwNI CAGNNNCTG 1 cut(s) 731
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 4 cut(s) 367, 592, 852, 984
ApeKI GCWGC 9 cut(s) 728, 731, 737, 740, 743, 889, 892, 1044, 1047
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 163, 194
AsuHPI GGTGA 2 cut(s) 929, 965
AsuII TTCGAA 1 cut(s) 326
AvaII GGWCC 2 cut(s) 163, 194
AxyI CCTNAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 594
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 3 cut(s) 349, 395, 478
Bbv12I GWGCWC 1 cut(s) 821
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 9 cut(s) 718, 740, 749, 752, 755, 901, 904, 1031, 1059
BccI CCATC 9 cut(s) 60, 119, 317, 462, 618, 645, 654, 680, 984
BceAI ACGGC 1 cut(s) 867
BcgI CGANNNNNNTGC 4 cut(s) 395, 429, 682, 716
BciT130I CCWGG 3 cut(s) 39, 160, 806
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 103, 294
BfaI CTAG 4 cut(s) 152, 252, 353, 605
BfmI CTRYAG 2 cut(s) 9, 1045
BfuAI ACCTGC 1 cut(s) 708
BfuI GTATCC 1 cut(s) 249
Bme1390I CCNGG 3 cut(s) 39, 160, 806
Bme18I GGWCC 2 cut(s) 163, 194
BmgT120I GGNCC 2 cut(s) 163, 194
BmiI GGNNCC 2 cut(s) 33, 164
BmrFI CCNGG 3 cut(s) 39, 160, 806
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 3 cut(s) 349, 395, 478
Bpu10I CCTNAGC 2 cut(s) 317, 960
Bpu14I TTCGAA 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 5 cut(s) 158, 159, 804, 849, 1039
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 890, 920
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 530, 811, 982
Bse118I RCCGGY 3 cut(s) 365, 790, 854
Bse1I ACTGG 2 cut(s) 298, 401
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 3 cut(s) 39, 160, 806
BseDI CCNNGG 5 cut(s) 158, 159, 804, 849, 1039
BseGI GGATG 5 cut(s) 52, 67, 309, 473, 955
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 4 cut(s) 58, 530, 811, 982
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 3 cut(s) 100, 212, 974
BseNI ACTGG 2 cut(s) 298, 401
BseRI GAGGAG 2 cut(s) 80, 366
BseX3I CGGCCG 2 cut(s) 367, 852
BseXI GCAGC 9 cut(s) 718, 740, 749, 752, 755, 901, 904, 1031, 1059
BsgI GTGCAG 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 370, 855
BshFI GGCC 4 cut(s) 369, 594, 854, 986
BsiEI CGRYCG 2 cut(s) 370, 855
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 4 cut(s) 366, 719, 791, 855
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 58, 530, 811, 982
BsmAI GTCTC 2 cut(s) 103, 294
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 4 cut(s) 369, 594, 854, 986
Bso31I GGTCTC 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 159, 821
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
BspACI CCGC 9 cut(s) 370, 582, 704, 735, 987, 990, 993, 996, 1050
BspANI GGCC 4 cut(s) 369, 594, 854, 986
BspCNI CTCAG 3 cut(s) 99, 211, 973
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 33, 164
BspMAI CTGCAG 2 cut(s) 13, 1049
BspMI ACCTGC 1 cut(s) 708
BspPI GGATC 4 cut(s) 196, 341, 407, 1060
BspT104I TTCGAA 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 3 cut(s) 365, 790, 854
BsrI ACTGG 2 cut(s) 298, 401
BssAI RCCGGY 3 cut(s) 365, 790, 854
BssECI CCNNGG 5 cut(s) 158, 159, 804, 849, 1039
BssMI GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
BssT1I CCWWGG 1 cut(s) 1039
Bst2UI CCWGG 3 cut(s) 39, 160, 806
Bst4CI ACNGT 3 cut(s) 24, 31, 663
Bst6I CTCTTC 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 13, 580, 792
BstDEI CTNAG 4 cut(s) 86, 198, 317, 960
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 5 cut(s) 52, 67, 309, 473, 955
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 8 cut(s) 142, 191, 336, 402, 427, 564, 973, 1055
BstMAI GTCTC 2 cut(s) 103, 294
BstMBI GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
BstMCI CGRYCG 2 cut(s) 370, 855
BstMWI GCNNNNNNNGC 9 cut(s) 272, 703, 734, 737, 740, 743, 889, 992, 995
BstNI CCWGG 3 cut(s) 39, 160, 806
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 3 cut(s) 37, 158, 804
BstSFI CTRYAG 2 cut(s) 9, 1045
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 9 cut(s) 718, 740, 749, 752, 755, 901, 904, 1031, 1059
BstV2I GAAGAC 3 cut(s) 349, 395, 478
BstZI CGGCCG 2 cut(s) 367, 852
Bsu36I CCTNAGG 1 cut(s) 86
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 4 cut(s) 369, 594, 854, 986
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 5 cut(s) 52, 67, 309, 473, 955
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 708
Cac8I GCNNGC 3 cut(s) 13, 580, 792
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 3 cut(s) 365, 790, 854
Cfr13I GGNCC 2 cut(s) 163, 194
Csp6I GTAC 2 cut(s) 211, 1036
CviQI GTAC 2 cut(s) 211, 1036
DdeI CTNAG 4 cut(s) 86, 198, 317, 960
DpnI GATC 8 cut(s) 141, 190, 335, 401, 426, 563, 972, 1054
DpnII GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
DraI TTTAAA 1 cut(s) 1077
EaeI YGGCCR 4 cut(s) 367, 592, 852, 984
EagI CGGCCG 2 cut(s) 367, 852
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EclXI CGGCCG 2 cut(s) 367, 852
Eco130I CCWWGG 1 cut(s) 1039
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 163, 194
Eco52I CGGCCG 2 cut(s) 367, 852
Eco57I CTGAAG 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 86
EcoO109I RGGNCCY 2 cut(s) 163, 194
EcoRII CCWGG 3 cut(s) 37, 158, 804
EcoT14I CCWWGG 1 cut(s) 1039
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 1039
FaqI GGGAC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 1068
FokI GGATG 5 cut(s) 39, 74, 296, 480, 942
FriOI GRGCYC 1 cut(s) 159
FspBI CTAG 4 cut(s) 152, 252, 353, 605
GlaI GCGC 1 cut(s) 373
HaeIII GGCC 4 cut(s) 369, 594, 854, 986
HapII CCGG 4 cut(s) 366, 719, 791, 855
HhaI GCGC 1 cut(s) 374
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 3 cut(s) 27, 442, 1069
HindII GTYRAC 3 cut(s) 27, 442, 1069
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 5 cut(s) 48, 323, 499, 722, 867
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 4 cut(s) 366, 719, 791, 855
HphI GGTGA 2 cut(s) 929, 965
Hpy166II GTNNAC 4 cut(s) 27, 442, 866, 1069
Hpy188I TCNGA 3 cut(s) 201, 338, 387
Hpy188III TCNNGA 8 cut(s) 88, 192, 431, 458, 490, 542, 650, 719
Hpy8I GTNNAC 4 cut(s) 27, 442, 866, 1069
HpyAV CCTTC 3 cut(s) 88, 280, 568
HpyCH4III ACNGT 3 cut(s) 24, 31, 663
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 7 cut(s) 11, 180, 406, 697, 773, 877, 1047
HpyF10VI GCNNNNNNNGC 9 cut(s) 272, 703, 734, 737, 740, 743, 889, 992, 995
HpyF3I CTNAG 4 cut(s) 86, 198, 317, 960
HpySE526I ACGT 1 cut(s) 444
HspAI GCGC 1 cut(s) 372
Kpn2I TCCGGA 1 cut(s) 718
KroI GCCGGC 1 cut(s) 790
KroNI GCCGGC 1 cut(s) 792
Ksp22I TGATCA 1 cut(s) 561
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
LmnI GCTCC 2 cut(s) 67, 379
Lsp1109I GCAGC 9 cut(s) 718, 740, 749, 752, 755, 901, 904, 1031, 1059
LweI GCATC 1 cut(s) 684
MaeI CTAG 4 cut(s) 152, 252, 353, 605
MaeII ACGT 1 cut(s) 444
MalI GATC 8 cut(s) 141, 190, 335, 401, 426, 563, 972, 1054
MboI GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
MboII GAAGA 9 cut(s) 103, 208, 340, 349, 400, 434, 478, 505, 508
MhlI GDGCHC 2 cut(s) 159, 821
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 1 cut(s) 751
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 2 cut(s) 731, 861
MmeI TCCRAC 2 cut(s) 80, 266
Mox20I TGGCCA 1 cut(s) 594
Mph1103I ATGCAT 1 cut(s) 408
MroI TCCGGA 1 cut(s) 718
MroNI GCCGGC 1 cut(s) 790
MscI TGGCCA 1 cut(s) 594
MseI TTAA 3 cut(s) 441, 507, 1076
MslI CAYNNNNRTG 3 cut(s) 435, 569, 978
Msp20I TGGCCA 1 cut(s) 594
MspA1I CMGCKG 2 cut(s) 731, 1050
MspI CCGG 4 cut(s) 366, 719, 791, 855
MspR9I CCNGG 3 cut(s) 39, 160, 806
MvaI CCWGG 3 cut(s) 39, 160, 806
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 9 cut(s) 272, 703, 734, 737, 740, 743, 889, 992, 995
NaeI GCCGGC 1 cut(s) 792
NdeII GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
NgoMIV GCCGGC 1 cut(s) 790
NlaIV GGNNCC 2 cut(s) 33, 164
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 790
NspV TTCGAA 1 cut(s) 326
PagI TCATGA 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 792
PfeI GAWTC 3 cut(s) 48, 323, 499
PflMI CCANNNNNTGG 2 cut(s) 530, 982
PfoI TCCNGGA 1 cut(s) 37
PleI GAGTC 2 cut(s) 730, 861
PpsI GAGTC 2 cut(s) 730, 861
PpuMI RGGWCCY 2 cut(s) 163, 194
Psp5II RGGWCCY 2 cut(s) 163, 194
Psp6I CCWGG 3 cut(s) 37, 158, 804
PspGI CCWGG 3 cut(s) 37, 158, 804
PspN4I GGNNCC 2 cut(s) 33, 164
PspPI GGNCC 2 cut(s) 163, 194
PspPPI RGGWCCY 2 cut(s) 163, 194
PstI CTGCAG 2 cut(s) 13, 1049
PstNI CAGNNNCTG 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 212, 1037
RsaNI GTAC 2 cut(s) 211, 1036
RseI CAYNNNNRTG 3 cut(s) 435, 569, 978
SalI GTCGAC 1 cut(s) 1067
SaqAI TTAA 3 cut(s) 441, 507, 1076
Sau3AI GATC 8 cut(s) 139, 188, 333, 399, 424, 561, 970, 1052
Sau96I GGNCC 2 cut(s) 163, 194
SchI GAGTC 2 cut(s) 731, 861
ScrFI CCNGG 3 cut(s) 39, 160, 806
SduI GDGCHC 2 cut(s) 159, 821
SfaNI GCATC 1 cut(s) 684
SfcI CTRYAG 2 cut(s) 9, 1045
SfuI TTCGAA 1 cut(s) 326
SinI GGWCC 2 cut(s) 163, 194
SmiMI CAYNNNNRTG 3 cut(s) 435, 569, 978
Sse9I AATT 1 cut(s) 751
SsiI CCGC 9 cut(s) 370, 582, 704, 735, 987, 990, 993, 996, 1050
SspMI CTAG 4 cut(s) 152, 252, 353, 605
StyD4I CCNGG 3 cut(s) 37, 158, 804
StyI CCWWGG 1 cut(s) 1039
TaaI ACNGT 3 cut(s) 24, 31, 663
TaiI ACGT 1 cut(s) 447
TaqI TCGA 7 cut(s) 46, 114, 138, 326, 684, 692, 1068
TasI AATT 1 cut(s) 751
TauI GCSGC 7 cut(s) 372, 706, 737, 989, 992, 995, 998
TfiI GAWTC 3 cut(s) 48, 323, 499
Tru1I TTAA 3 cut(s) 441, 507, 1076
Tru9I TTAA 3 cut(s) 441, 507, 1076
TscAI CASTG 1 cut(s) 666
TseI GCWGC 9 cut(s) 728, 731, 737, 740, 743, 889, 892, 1044, 1047
TspDTI ATGAA 3 cut(s) 120, 587, 744
TspGWI ACGGA 2 cut(s) 74, 480
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 2 cut(s) 530, 982
VpaK11BI GGWCC 2 cut(s) 163, 194
XceI RCATGY 1 cut(s) 790
XmiI GTMKAC 1 cut(s) 1068
XspI CTAG 4 cut(s) 152, 252, 353, 605
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.