Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011388

Physical Location & Seq

Genomic Coordinates Forward (+)

6748812 .. 6751639

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGATGGCTGCAGGAAATGGACAACTGACTGTCCCTCCAGGGTTCCGATTCCATCCTACGGATGAAGAGCTTCTCTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATCGACCTTGATGTTATTAGGGAGGTGGATCTCAACAAACTGGAGCCCTGGGACCTCAAAGAGAAATGCAGAATAGGATCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACTCGAACGAACCGGGCAACCACAGCTGGGTTTTGGAAGGCAACTGGGAGAGACAAAGCCATCCATCTCGCCAATTCCAAGAGGATTGGCATGAGGAAAACCTTAGTCTTTTACACTGGCCGCGCACCTCATGGCCAAAAGACCGACTGGATCATGCATGAGTATCGCCTCGAAGATGACAACATTAGTGCTGATCAAGTTCAGCAGGAAGATGGATGGGTGGTTTGTAGGGTTTTCAAAAAGAAGAATCACAACAGAGGCTATCAACCAGAATTTGCTCATCATCAAGATCAAGAACACGATCACTTCCCAAACATGAAGGCAAGTGGTTCTCATGCTCCAGTACTACTAGATCACCATGAGCCAAAACAAAATCATCATCATCTGGAAGCACTGTATGATTACACTAGTAGTTTTGATCATGCTGGGTCCATGCACCTCCCGCAGTTGTTCAGTCCAGAGTCAGCTGTTGCTTCATCCTTCGTGTCACCTAATACTATCAATTTGAACACCATGGACATTGAGTGTTCTCAAAACCTTTTGCGGCTAACATCTACTGCAGCAGCAGCAGCAGCAGCTGGTTGTGGCCAACTCATGCAACAGCAGGAGAGATCCTTGATCAACGGTGGTGATTGGTCATTCTTGGACAAGCTCCTTACATCTCACCAGAGCCTCGATCATCACCACTCATCACATACCAAATGCAACAACCCTTCTTCATCAGCTCAGCAGCAGCTTAATAATTCTCATGAACATGTCGGTACTTCATCAACAACACAGCAGAGATTCCCATTTCAATACCTTGGCTGTGGAACTGACCTTTTAAAGTTTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

363

Amino Acids

41.19

Weight (kDa)

6.94

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca	FvH4_3g13550
malus_domestica	MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica	Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis	pycom05g21770 pycom10g18650
rosa_chinensis	RchiOBHm_Chr5g0022511
rosa_laevigata	RLG00000032667
rosa_multiflora	Rmu_sc0011329.1_g000004
rosa_rugosa	Rorug05G0074400
rosa_samantha	Rh5AG161200 Rh5CG174500
rosa_wichuraiana	Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	370, 692, 793
AclWI	GGATC	4 cut(s)	147, 196, 407, 855
AcoI	YGGCCR	3 cut(s)	367, 382, 835
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	212, 594, 1012
AfiI	CCNNNNNNNGG	2 cut(s)	58, 276
AflIII	ACRYGT	1 cut(s)	1003
AgsI	TTSAA	3 cut(s)	487, 757, 1046
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	37, 158
AluBI	AGCT	7 cut(s)	70, 275, 716, 827, 901, 974, 985
AluI	AGCT	7 cut(s)	70, 275, 716, 827, 901, 974, 985
Alw26I	GTCTC	2 cut(s)	103, 294
AlwI	GGATC	4 cut(s)	147, 196, 407, 855
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	4 cut(s)	194, 367, 382, 835
ApeKI	GCWGC	9 cut(s)	8, 809, 812, 815, 818, 821, 824, 979, 982
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	163, 194, 678
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	596, 729, 890, 905, 923
AvaII	GGWCC	2 cut(s)	163, 678
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	2 cut(s)	384, 837
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	8 cut(s)	821, 824, 827, 830, 833, 836, 991, 994
BccI	CCATC	6 cut(s)	60, 119, 317, 321, 455, 459
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	39, 160
BclI	TGATCA	3 cut(s)	442, 667, 867
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	103, 294
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	599, 657
BfmI	CTRYAG	2 cut(s)	9, 807
BlpI	GCTNAGC	1 cut(s)	975
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	3 cut(s)	39, 160, 263
Bme18I	GGWCC	2 cut(s)	163, 678
BmgT120I	GGNCC	3 cut(s)	163, 194, 678
BmiI	GGNNCC	4 cut(s)	44, 156, 164, 679
BmrFI	CCNGG	3 cut(s)	39, 160, 263
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	3 cut(s)	21, 173, 573
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuMI	CCSGG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	5 cut(s)	38, 158, 159, 762, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 276
Bse1I	ACTGG	5 cut(s)	156, 298, 370, 401, 590
Bse21I	CCTNAGG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	39, 160
BseDI	CCNNGG	5 cut(s)	38, 158, 159, 762, 1051
BseGI	GGATG	5 cut(s)	52, 67, 309, 470, 725
BseLI	CCNNNNNNNGG	2 cut(s)	58, 276
BseMII	CTCAG	3 cut(s)	100, 212, 989
BseNI	ACTGG	5 cut(s)	156, 298, 370, 401, 590
BseXI	GCAGC	8 cut(s)	821, 824, 827, 830, 833, 836, 991, 994
BseYI	CCCAGC	2 cut(s)	275, 674
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	196, 369, 384, 837
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	17, 176
BslI	CCNNNNNNNGG	2 cut(s)	58, 276
BsmAI	GTCTC	2 cut(s)	103, 294
BsmFI	GGGAC	2 cut(s)	17, 176
BsnI	GGCC	4 cut(s)	196, 369, 384, 837
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	975
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	3 cut(s)	370, 692, 793
BspANI	GGCC	4 cut(s)	196, 369, 384, 837
BspCNI	CTCAG	3 cut(s)	99, 211, 988
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	4 cut(s)	44, 156, 164, 679
BspMAI	CTGCAG	2 cut(s)	13, 811
BspPI	GGATC	4 cut(s)	147, 196, 407, 855
BspQI	GCTCTTC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	5 cut(s)	156, 298, 370, 401, 590
BssECI	CCNNGG	5 cut(s)	38, 158, 159, 762, 1051
BssT1I	CCWWGG	2 cut(s)	762, 1051
Bst2UI	CCWGG	2 cut(s)	39, 160
Bst4CI	ACNGT	3 cut(s)	31, 645, 875
Bst6I	CTCTTC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	86, 198, 352, 975
BstDSI	CCRYGG	1 cut(s)	762
BstF5I	GGATG	5 cut(s)	52, 67, 309, 470, 725
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	374
BstMAI	GTCTC	2 cut(s)	103, 294
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 691, 815, 818, 821, 824
BstNI	CCWGG	2 cut(s)	39, 160
BstNSI	RCATGY	1 cut(s)	1007
BstSCI	CCNGG	3 cut(s)	37, 158, 261
BstSFI	CTRYAG	2 cut(s)	9, 807
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	8 cut(s)	821, 824, 827, 830, 833, 836, 991, 994
BstX2I	RGATCY	2 cut(s)	139, 860
BstYI	RGATCY	2 cut(s)	139, 860
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	196, 369, 384, 837
BtgI	CCRYGG	1 cut(s)	762
BtsCI	GGATG	5 cut(s)	52, 67, 309, 470, 725
BtsIMutI	CAGTG	2 cut(s)	363, 641
CaiI	CAGNNNCTG	1 cut(s)	827
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	163, 194, 678
Csp6I	GTAC	3 cut(s)	211, 593, 1011
CviQI	GTAC	3 cut(s)	211, 593, 1011
DdeI	CTNAG	4 cut(s)	86, 198, 352, 975
DraI	TTTAAA	1 cut(s)	1074
EaeI	YGGCCR	3 cut(s)	367, 382, 835
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	762, 1051
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	163, 678
Eco57I	CTGAAG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	163, 194
EcoRII	CCWGG	2 cut(s)	37, 158
EcoT14I	CCWWGG	2 cut(s)	762, 1051
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	762, 1051
FaqI	GGGAC	2 cut(s)	17, 176
FauI	CCCGC	1 cut(s)	699
FbaI	TGATCA	3 cut(s)	442, 667, 867
FokI	GGATG	5 cut(s)	39, 74, 296, 477, 712
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	599, 657
GlaI	GCGC	1 cut(s)	373
GsaI	CCCAGC	2 cut(s)	279, 678
GsuI	CTGGAG	3 cut(s)	21, 173, 573
HaeIII	GGCC	4 cut(s)	196, 369, 384, 837
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	48, 496, 710, 1035
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	5 cut(s)	596, 729, 890, 905, 923
Hpy188I	TCNGA	2 cut(s)	47, 201
Hpy188III	TCNNGA	6 cut(s)	88, 536, 542, 635, 707, 998
HpyAV	CCTTC	5 cut(s)	88, 280, 562, 739, 972
HpyCH4III	ACNGT	3 cut(s)	31, 645, 875
HpyCH4V	TGCA	7 cut(s)	11, 180, 406, 685, 809, 847, 954
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 691, 815, 818, 821, 824
HpyF3I	CTNAG	4 cut(s)	86, 198, 352, 975
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	3 cut(s)	442, 667, 867
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	154, 592, 906
Lsp1109I	GCAGC	8 cut(s)	821, 824, 827, 830, 833, 836, 991, 994
MaeI	CTAG	2 cut(s)	599, 657
MaeIII	GTNAC	1 cut(s)	735
MboII	GAAGA	7 cut(s)	77, 103, 208, 434, 470, 505, 957
MflI	RGATCY	2 cut(s)	139, 860
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	2 cut(s)	384, 837
MluCI	AATT	4 cut(s)	322, 521, 751, 991
MluNI	TGGCCA	2 cut(s)	384, 837
MlyI	GAGTC	1 cut(s)	719
Mox20I	TGGCCA	2 cut(s)	384, 837
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	69
MscI	TGGCCA	2 cut(s)	384, 837
MseI	TTAA	2 cut(s)	987, 1073
MslI	CAYNNNNRTG	1 cut(s)	1002
Msp20I	TGGCCA	2 cut(s)	384, 837
MspA1I	CMGCKG	3 cut(s)	275, 716, 827
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	3 cut(s)	39, 160, 263
MvaI	CCWGG	2 cut(s)	39, 160
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	6 cut(s)	272, 691, 815, 818, 821, 824
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	762
NlaIV	GGNNCC	4 cut(s)	44, 156, 164, 679
NmuCI	GTSAC	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	1007
PagI	TCATGA	1 cut(s)	997
PasI	CCCWGGG	1 cut(s)	159
PciI	ACATGT	1 cut(s)	1003
PciSI	GCTCTTC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	48, 496, 1035
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	163
PscI	ACATGT	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	37, 158
PspFI	CCCAGC	2 cut(s)	275, 674
PspGI	CCWGG	2 cut(s)	37, 158
PspN4I	GGNNCC	4 cut(s)	44, 156, 164, 679
PspPI	GGNCC	3 cut(s)	163, 194, 678
PspPPI	RGGWCCY	1 cut(s)	163
PstI	CTGCAG	2 cut(s)	13, 811
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	139, 860
PvuII	CAGCTG	3 cut(s)	275, 716, 827
RsaI	GTAC	3 cut(s)	212, 594, 1012
RsaNI	GTAC	3 cut(s)	211, 593, 1011
RseI	CAYNNNNRTG	1 cut(s)	1002
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	987, 1073
Sau96I	GGNCC	3 cut(s)	163, 194, 678
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	3 cut(s)	39, 160, 263
SduI	GDGCHC	1 cut(s)	159
SfcI	CTRYAG	2 cut(s)	9, 807
SinI	GGWCC	2 cut(s)	163, 678
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	4 cut(s)	322, 521, 751, 991
SsiI	CCGC	3 cut(s)	370, 692, 793
SspMI	CTAG	2 cut(s)	599, 657
StyD4I	CCNGG	3 cut(s)	37, 158, 261
StyI	CCWWGG	2 cut(s)	762, 1051
TaaI	ACNGT	3 cut(s)	31, 645, 875
TaqI	TCGA	4 cut(s)	114, 253, 420, 924
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	322, 521, 751, 991
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	2 cut(s)	372, 796
TfiI	GAWTC	3 cut(s)	48, 496, 1035
Tru1I	TTAA	2 cut(s)	987, 1073
Tru9I	TTAA	2 cut(s)	987, 1073
TscAI	CASTG	2 cut(s)	370, 648
TseFI	GTSAC	1 cut(s)	735
TseI	GCWGC	9 cut(s)	8, 809, 812, 815, 818, 821, 824, 979, 982
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	7 cut(s)	78, 120, 581, 714, 957, 1005, 1014
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	370, 648
VpaK11BI	GGWCC	2 cut(s)	163, 678
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	1007
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	599, 657
ZrmI	AGTACT	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.