Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011388

Physical Location & Seq

Genomic Coordinates Reverse (-)

31891140 .. 31898041

Gene Structure 6902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1220600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGATGGCTGCAGGAAATGGACAATTGACGGTTCCTCCAGGGTTCCGATTCCATCCGACAGATGAGGAGCTTCTCTACTATTACCTCAGGAAGAAAGTGTCTTATGAAGCCATCGACCTTGATGTTATTGGGGAGGTGGATCTCAACAAACTCGAACCCTGGGACCTCAAAGAGAAATGCAGAATAGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATATCCAACAGGAACTCGTACAAACCGCGCAACCACAGCTGGGTTTTGGAAGGCAACTGGGAGAGACAAAGCGATCCACCTCACCAGCTCCAAGAGAATTGGCATGAGGAAAACCCTAGTCTTTTACACTGGCCGCGCTCCCCATGGCCAAAAGACCGACTGGATCATGCACGAGTATCGCCTCGAAGATGATAACATTACTGCTGATCAAGTTCAGGAAGATGGATGGGTGGTATGTAGGGTTTTCAAGAAGAAGAATCACAACAAAGGTTATCAACCAGAATTTGCTCATCATCAAGATCATCAAGAGCACGAACACTTCACGAACATGAAGGCAAGTGGTTCTCATGCCCCGATACTACTAGATCATCACGATCATCATCAGCAAAAACAAAATCACCATCGTCTGGAAGGACTATATGATTATCCTAGTAGCTTTGATCACGCTGGATCCATGCACCTCCCACAGCTGTTCAGTCCAGAGTCGGCTGTCGCTGCTTCATCCTTTGTATCACCGCACAATATCAACTTGAACACGATGGACATTGAGTGTTCCCAAAACCTGTTAAGGCTAACATCCACCGCCGCCGCGGCAGCTGCAGCAGCATCTGGTAGTTGTGGACTCGTGCAACAGCAGGAGAGGTCCTTCATCAGTGGTGGTGATTGGTCATTCTTGGACAAGCTCCTTGCATCTCATCAGAACCTCGATATTAATCACTCAACGTCGCAAACCAAATGCAACCCTTCTTCATCGACTCAACAACTTAGTAACTCTCATGATCATGATCATGTGGGTACTTCATCATCAACGCAGCAGAGATTCCCATTTCAATACCTTGGGTGCGGAACTGACTTCTTAAAATTTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

370

Amino Acids

41.8

Weight (kDa)

6.81

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 140	2.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca	FvH4_3g13550
malus_domestica	MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica	Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis	pycom05g21770 pycom10g18650
rosa_chinensis	RchiOBHm_Chr5g0022511
rosa_laevigata	RLG00000032667
rosa_multiflora	Rmu_sc0011329.1_g000004
rosa_rugosa	Rorug05G0074400
rosa_samantha	Rh5AG161200 Rh5CG174500
rosa_wichuraiana	Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccII	CGCG	3 cut(s)	264, 372, 827
AciI	CCGC	8 cut(s)	262, 370, 752, 819, 822, 825, 827, 1080
AclWI	GGATC	5 cut(s)	147, 304, 407, 681, 694
AcoI	YGGCCR	2 cut(s)	367, 382
AcsI	RAATTY	2 cut(s)	518, 1097
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	212, 256, 1033
AfiI	CCNNNNNNNGG	2 cut(s)	276, 643
AgsI	TTSAA	3 cut(s)	484, 769, 1067
AjnI	CCWGG	2 cut(s)	37, 158
AluBI	AGCT	7 cut(s)	70, 275, 324, 672, 706, 833, 919
AluI	AGCT	7 cut(s)	70, 275, 324, 672, 706, 833, 919
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	5 cut(s)	147, 304, 407, 681, 694
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	3 cut(s)	194, 367, 382
ApeKI	GCWGC	7 cut(s)	8, 731, 830, 833, 836, 839, 1048
ApoI	RAATTY	2 cut(s)	518, 1097
AseI	ATTAAT	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	266, 374
AspS9I	GGNCC	3 cut(s)	163, 194, 879
AsuHPI	GGTGA	4 cut(s)	310, 626, 741, 908
AvaII	GGWCC	2 cut(s)	163, 879
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	686
BauI	CACGAG	2 cut(s)	407, 860
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	6 cut(s)	718, 820, 842, 848, 851, 1060
BccI	CCATC	6 cut(s)	60, 119, 452, 456, 645, 769
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	39, 160
BclI	TGATCA	4 cut(s)	442, 676, 1015, 1021
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	353, 599, 666
BfmI	CTRYAG	2 cut(s)	9, 834
BglI	GCCNNNNNGGC	1 cut(s)	827
Bme1390I	CCNGG	2 cut(s)	39, 160
Bme18I	GGWCC	2 cut(s)	163, 879
BmgT120I	GGNCC	3 cut(s)	163, 194, 879
BmiI	GGNNCC	4 cut(s)	33, 44, 164, 688
BmrFI	CCNGG	2 cut(s)	39, 160
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	851, 935
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	21
BsaBI	GATNNNNATC	3 cut(s)	615, 948, 1020
BsaJI	CCNNGG	6 cut(s)	38, 158, 159, 379, 825, 1072
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 643
Bse1I	ACTGG	3 cut(s)	298, 370, 401
Bse21I	CCTNAGG	1 cut(s)	86
Bse8I	GATNNNNATC	3 cut(s)	615, 948, 1020
BseBI	CCWGG	2 cut(s)	39, 160
BseDI	CCNNGG	6 cut(s)	38, 158, 159, 379, 825, 1072
BseGI	GGATG	4 cut(s)	52, 467, 737, 812
BseJI	GATNNNNATC	3 cut(s)	615, 948, 1020
BseLI	CCNNNNNNNGG	2 cut(s)	276, 643
BseMII	CTCAG	2 cut(s)	100, 212
BseNI	ACTGG	3 cut(s)	298, 370, 401
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	6 cut(s)	718, 820, 842, 848, 851, 1060
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	3 cut(s)	264, 372, 827
BshFI	GGCC	3 cut(s)	196, 369, 384
BsiHKAI	GWGCWC	1 cut(s)	549
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	276, 643
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	196, 369, 384
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	8 cut(s)	262, 370, 752, 819, 822, 825, 827, 1080
BspANI	GGCC	3 cut(s)	196, 369, 384
BspCNI	CTCAG	2 cut(s)	99, 211
BspFNI	CGCG	3 cut(s)	264, 372, 827
BspHI	TCATGA	2 cut(s)	1012, 1018
BspLI	GGNNCC	4 cut(s)	33, 44, 164, 688
BspMAI	CTGCAG	2 cut(s)	13, 838
BspPI	GGATC	5 cut(s)	147, 304, 407, 681, 694
BsrI	ACTGG	3 cut(s)	298, 370, 401
BssECI	CCNNGG	6 cut(s)	38, 158, 159, 379, 825, 1072
BssSI	CACGAG	2 cut(s)	407, 860
BssT1I	CCWWGG	2 cut(s)	379, 1072
Bst2BI	CACGAG	2 cut(s)	407, 860
Bst2UI	CCWGG	2 cut(s)	39, 160
Bst4CI	ACNGT	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	86, 198, 1001
BstDSI	CCRYGG	2 cut(s)	379, 825
BstF5I	GGATG	4 cut(s)	52, 467, 737, 812
BstFNI	CGCG	3 cut(s)	264, 372, 827
BstHHI	GCGC	2 cut(s)	266, 374
BstMAI	GTCTC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 731, 827, 830, 833, 836, 839
BstNI	CCWGG	2 cut(s)	39, 160
BstSCI	CCNGG	2 cut(s)	37, 158
BstSFI	CTRYAG	2 cut(s)	9, 834
BstUI	CGCG	3 cut(s)	264, 372, 827
BstV1I	GCAGC	6 cut(s)	718, 820, 842, 848, 851, 1060
BstX2I	RGATCY	2 cut(s)	139, 686
BstYI	RGATCY	2 cut(s)	139, 686
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	196, 369, 384
BtgI	CCRYGG	2 cut(s)	379, 825
BtsCI	GGATG	4 cut(s)	52, 467, 737, 812
BtsIMutI	CAGTG	2 cut(s)	363, 895
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	2 cut(s)	1012, 1018
CfoI	GCGC	2 cut(s)	266, 374
Cfr13I	GGNCC	3 cut(s)	163, 194, 879
Cfr42I	CCGCGG	1 cut(s)	828
Csp6I	GTAC	3 cut(s)	211, 255, 1032
CviAII	CATG	9 cut(s)	340, 380, 403, 565, 584, 691, 1013, 1019, 1025
CviQI	GTAC	3 cut(s)	211, 255, 1032
DdeI	CTNAG	3 cut(s)	86, 198, 1001
EaeI	YGGCCR	2 cut(s)	367, 382
Eco130I	CCWWGG	2 cut(s)	379, 1072
Eco47I	GGWCC	2 cut(s)	163, 879
Eco57I	CTGAAG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	3 cut(s)	163, 194, 879
EcoRII	CCWGG	2 cut(s)	37, 158
EcoT14I	CCWWGG	2 cut(s)	379, 1072
ErhI	CCWWGG	2 cut(s)	379, 1072
FaeI	CATG	9 cut(s)	343, 383, 406, 568, 587, 694, 1016, 1022, 1028
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	9 cut(s)	339, 379, 402, 564, 583, 690, 1012, 1018, 1024
FbaI	TGATCA	4 cut(s)	442, 676, 1015, 1021
FokI	GGATG	4 cut(s)	39, 474, 724, 799
FspBI	CTAG	3 cut(s)	353, 599, 666
GlaI	GCGC	2 cut(s)	265, 373
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	196, 369, 384
HhaI	GCGC	2 cut(s)	266, 374
Hin1II	CATG	9 cut(s)	343, 383, 406, 568, 587, 694, 1016, 1022, 1028
Hin6I	GCGC	2 cut(s)	264, 372
HinP1I	GCGC	2 cut(s)	264, 372
HinfI	GANTC	6 cut(s)	48, 493, 719, 858, 991, 1056
HphI	GGTGA	4 cut(s)	310, 626, 741, 908
Hpy166II	GTNNAC	1 cut(s)	857
Hpy188I	TCNGA	4 cut(s)	47, 57, 201, 936
Hpy8I	GTNNAC	1 cut(s)	857
Hpy99I	CGWCG	1 cut(s)	964
HpyAV	CCTTC	5 cut(s)	280, 562, 641, 892, 990
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	959
HpyCH4V	TGCA	8 cut(s)	11, 180, 406, 694, 836, 865, 926, 975
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 731, 827, 830, 833, 836, 839
HpyF3I	CTNAG	3 cut(s)	86, 198, 1001
HpySE526I	ACGT	1 cut(s)	959
Hsp92II	CATG	9 cut(s)	343, 383, 406, 568, 587, 694, 1016, 1022, 1028
HspAI	GCGC	2 cut(s)	264, 372
Ksp22I	TGATCA	4 cut(s)	442, 676, 1015, 1021
KspI	CCGCGG	1 cut(s)	828
LmnI	GCTCC	4 cut(s)	67, 329, 379, 924
Lsp1109I	GCAGC	6 cut(s)	718, 820, 842, 848, 851, 1060
LweI	GCATC	2 cut(s)	851, 935
MaeI	CTAG	3 cut(s)	353, 599, 666
MaeII	ACGT	1 cut(s)	959
MaeIII	GTNAC	1 cut(s)	1004
MboII	GAAGA	7 cut(s)	103, 208, 434, 467, 499, 502, 975
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	2 cut(s)	139, 686
MhlI	GDGCHC	1 cut(s)	549
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	4 cut(s)	23, 333, 518, 1097
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	3 cut(s)	728, 852, 985
MmeI	TCCRAC	2 cut(s)	80, 266
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	3 cut(s)	803, 948, 1094
MslI	CAYNNNNRTG	3 cut(s)	563, 1017, 1023
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	4 cut(s)	275, 706, 827, 833
MspR9I	CCNGG	2 cut(s)	39, 160
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	39, 160
MvnI	CGCG	3 cut(s)	264, 372, 827
MwoI	GCNNNNNNNGC	7 cut(s)	272, 731, 827, 830, 833, 836, 839
NcoI	CCATGG	1 cut(s)	379
NlaIII	CATG	9 cut(s)	343, 383, 406, 568, 587, 694, 1016, 1022, 1028
NlaIV	GGNNCC	4 cut(s)	33, 44, 164, 688
PagI	TCATGA	2 cut(s)	1012, 1018
PasI	CCCWGGG	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	48, 493, 1056
PflMI	CCANNNNNTGG	1 cut(s)	643
PleI	GAGTC	3 cut(s)	727, 852, 985
PpsI	GAGTC	3 cut(s)	727, 852, 985
PpuMI	RGGWCCY	2 cut(s)	163, 879
PshBI	ATTAAT	1 cut(s)	948
Psp5II	RGGWCCY	2 cut(s)	163, 879
Psp6I	CCWGG	2 cut(s)	37, 158
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	37, 158
PspN4I	GGNNCC	4 cut(s)	33, 44, 164, 688
PspPI	GGNCC	3 cut(s)	163, 194, 879
PspPPI	RGGWCCY	2 cut(s)	163, 879
PstI	CTGCAG	2 cut(s)	13, 838
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	2 cut(s)	139, 686
PvuII	CAGCTG	3 cut(s)	275, 706, 833
RsaI	GTAC	3 cut(s)	212, 256, 1033
RsaNI	GTAC	3 cut(s)	211, 255, 1032
RseI	CAYNNNNRTG	3 cut(s)	563, 1017, 1023
SacII	CCGCGG	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	803, 948, 1094
Sau96I	GGNCC	3 cut(s)	163, 194, 879
SchI	GAGTC	3 cut(s)	728, 852, 985
ScrFI	CCNGG	2 cut(s)	39, 160
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	2 cut(s)	851, 935
SfcI	CTRYAG	2 cut(s)	9, 834
Sfr303I	CCGCGG	1 cut(s)	828
SgrBI	CCGCGG	1 cut(s)	828
SinI	GGWCC	2 cut(s)	163, 879
SmiMI	CAYNNNNRTG	3 cut(s)	563, 1017, 1023
Sse9I	AATT	4 cut(s)	23, 333, 518, 1097
SsiI	CCGC	8 cut(s)	262, 370, 752, 819, 822, 825, 827, 1080
SspMI	CTAG	3 cut(s)	353, 599, 666
StyD4I	CCNGG	2 cut(s)	37, 158
StyI	CCWWGG	2 cut(s)	379, 1072
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	962
TaqI	TCGA	5 cut(s)	114, 153, 420, 942, 989
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	23, 333, 518, 1097
TauI	GCSGC	4 cut(s)	372, 824, 827, 830
TfiI	GAWTC	3 cut(s)	48, 493, 1056
Tru1I	TTAA	3 cut(s)	803, 948, 1094
Tru9I	TTAA	3 cut(s)	803, 948, 1094
TscAI	CASTG	2 cut(s)	370, 895
TseI	GCWGC	7 cut(s)	8, 731, 830, 833, 836, 839, 1048
TspDTI	ATGAA	6 cut(s)	120, 581, 726, 874, 975, 1026
TspRI	CASTG	2 cut(s)	370, 895
Van91I	CCANNNNNTGG	1 cut(s)	643
VpaK11BI	GGWCC	2 cut(s)	163, 879
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	2 cut(s)	518, 1097
XspI	CTAG	3 cut(s)	353, 599, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.