MD00G1085300.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011388
Physical Location & Seq
Forward (+)
17110467 .. 17113093
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1085300.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGATGGCTGCAGGAAATGGACAACTGACGGTTCCTCCAGGGTTCCGTTTCCATCCGACAGATGAGGAGCTCCTCTACTATTACCTTCGGAAGAAAGTGTCTTATGAAACCATCGATCTTGATGTTATTAGGGAGGTGGATCTCAACAAACTCGAACCCTGGGACCTCAAAGAGAAATGCAGAATAGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACTCGTACAAACCGCGCAACCACAGCTGGGTTTTGGAAGGCAACTGGGAGAGACAAAGCCATCCACCTCCCCAACTCCAAGAGGATTGGCATGAGGAAAACCTTAGTCTTTTACACTGGGCGCGCTCCCCATGGCCAAAAGACCGACTGGATCATGCACGAGTATCGCCTCGAAGATGACAACACTAGTGCTGATCAAGTTCAGGAAGATGGGTGGGTGGTATGTAGGGTTTTCAAGAAAAAGAATCACAACAGAGGTTATCAACCAGAATTTGCTCATCAAGATCATCGAGAGCATGATCACTTCACGAACATGAAGGCAAGTGGTTCTCATGTTCCGATACTACAAGATCATTACGATCATCATCAGCAAAAACAAAATCACCATCATCTGGAAGGACTATATAATTATCCTAGTAGCTTTGATCACGCTGGATCCATGCACCTCCCACAGTTGTTCAGTCCAGAGTCGGCTGTCGCTGCTTCCTCTTTTGTGTCACCTCACAATATCAACTTGAACACCATGGACATTGAGTGTTCCCAAAACCTGTTGAGGCTAACATCCACTGCCGCGGCGGCAGCTGCAGCAGCATCTGGTAGTTGTGGACTCATGCAACAGCAGGAGAGGTCCTTCATTAGTGGTGGTGATTGGTCATTCTTGGACAAGCTCCTTGCATCTCATCAGAACTTCGATGTTAATCACTCAGCGTCGCAAACGGCCAAGTGCAACCCTTCTTCATCGACTCAACAACTTAGTAACTCTCATGATCATGATCATGTGGGTACGTCATCATCAACGCAGCAGAGATTCCCATTTCAATACCTTGGGTGCGCAACTGACATCTTAAAGTTTTCCAAGTAG

Protein Analysis

370

Amino Acids

41.95

Weight (kDa)

7.13

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 140 1.4e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79580 AT1G79580 AT1G79580 AT1G79580 AT1G79580
fragaria_vesca FvH4_3g13550
malus_domestica MD00G1085300.v1.1 MD10G1220600.v1.1
prunus_persica Prupe.4G123700_v2.0.a1 Prupe.4G123700_v2.0.a1
pyrus_communis pycom05g21770 pycom10g18650
rosa_chinensis RchiOBHm_Chr5g0022511
rosa_laevigata RLG00000032667
rosa_multiflora Rmu_sc0011329.1_g000004
rosa_rugosa Rorug05G0074400
rosa_samantha Rh5AG161200 Rh5CG174500
rosa_wichuraiana Rw0G005560 Rw5G014370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1081
AccB7I CCANNNNNTGG 1 cut(s) 640
AccII CGCG 3 cut(s) 264, 372, 821
AciI CCGC 4 cut(s) 262, 819, 821, 824
AclWI GGATC 4 cut(s) 147, 407, 678, 691
AcoI YGGCCR 2 cut(s) 382, 966
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 3 cut(s) 212, 256, 1033
AfiI CCNNNNNNNGG 2 cut(s) 276, 640
AgsI TTSAA 3 cut(s) 484, 766, 1067
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 37, 158
AluBI AGCT 5 cut(s) 70, 275, 669, 830, 916
AluI AGCT 5 cut(s) 70, 275, 669, 830, 916
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 4 cut(s) 147, 407, 678, 691
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 3 cut(s) 194, 382, 966
ApeKI GCWGC 7 cut(s) 8, 728, 827, 830, 833, 836, 1048
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 4 cut(s) 266, 372, 374, 1082
AspS9I GGNCC 3 cut(s) 163, 194, 876
AsuHPI GGTGA 3 cut(s) 623, 738, 905
AvaII GGWCC 2 cut(s) 163, 876
BalI TGGCCA 1 cut(s) 384
BamHI GGATCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 6 cut(s) 715, 817, 839, 845, 848, 1060
BccI CCATC 5 cut(s) 60, 119, 317, 452, 642
BceAI ACGGC 1 cut(s) 981
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 2 cut(s) 39, 160
BclI TGATCA 5 cut(s) 442, 547, 673, 1015, 1021
BcoDI GTCTC 1 cut(s) 294
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 435, 663
BfmI CTRYAG 2 cut(s) 9, 831
BglI GCCNNNNNGGC 1 cut(s) 824
Bme1390I CCNGG 2 cut(s) 39, 160
Bme18I GGWCC 2 cut(s) 163, 876
BmgT120I GGNCC 3 cut(s) 163, 194, 876
BmiI GGNNCC 4 cut(s) 33, 44, 164, 685
BmrFI CCNGG 2 cut(s) 39, 160
BmrI ACTGGG 2 cut(s) 303, 375
BmsI GCATC 2 cut(s) 848, 932
BmuI ACTGGG 2 cut(s) 303, 375
BpmI CTGGAG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 114
BsaBI GATNNNNATC 3 cut(s) 612, 945, 1020
BsaJI CCNNGG 7 cut(s) 38, 158, 159, 379, 771, 819, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 640
Bse1I ACTGG 3 cut(s) 298, 370, 401
Bse8I GATNNNNATC 3 cut(s) 612, 945, 1020
BseBI CCWGG 2 cut(s) 39, 160
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 7 cut(s) 38, 158, 159, 379, 771, 819, 1072
BseGI GGATG 3 cut(s) 52, 309, 809
BseJI GATNNNNATC 3 cut(s) 612, 945, 1020
BseLI CCNNNNNNNGG 2 cut(s) 276, 640
BseMII CTCAG 2 cut(s) 212, 966
BseNI ACTGG 3 cut(s) 298, 370, 401
BsePI GCGCGC 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 62, 80
BseXI GCAGC 6 cut(s) 715, 817, 839, 845, 848, 1060
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 3 cut(s) 264, 372, 821
BshFI GGCC 3 cut(s) 196, 384, 968
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 276, 640
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 196, 384, 968
Bsp1286I GDGCHC 1 cut(s) 72
Bsp19I CCATGG 2 cut(s) 379, 771
BspACI CCGC 4 cut(s) 262, 819, 821, 824
BspANI GGCC 3 cut(s) 196, 384, 968
BspCNI CTCAG 2 cut(s) 211, 965
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 3 cut(s) 264, 372, 821
BspHI TCATGA 2 cut(s) 1012, 1018
BspLI GGNNCC 4 cut(s) 33, 44, 164, 685
BspMAI CTGCAG 2 cut(s) 13, 835
BspPI GGATC 4 cut(s) 147, 407, 678, 691
BsrI ACTGG 3 cut(s) 298, 370, 401
BssECI CCNNGG 7 cut(s) 38, 158, 159, 379, 771, 819, 1072
BssHII GCGCGC 1 cut(s) 370
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 3 cut(s) 379, 771, 1072
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 39, 160
Bst4CI ACNGT 2 cut(s) 31, 702
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 4 cut(s) 198, 352, 952, 1001
BstDSI CCRYGG 3 cut(s) 379, 771, 819
BstF5I GGATG 3 cut(s) 52, 309, 809
BstFNI CGCG 3 cut(s) 264, 372, 821
BstHHI GCGC 4 cut(s) 266, 372, 374, 1082
BstMAI GTCTC 1 cut(s) 294
BstMWI GCNNNNNNNGC 7 cut(s) 272, 728, 824, 827, 830, 833, 836
BstNI CCWGG 2 cut(s) 39, 160
BstSCI CCNGG 2 cut(s) 37, 158
BstSFI CTRYAG 2 cut(s) 9, 831
BstUI CGCG 3 cut(s) 264, 372, 821
BstV1I GCAGC 6 cut(s) 715, 817, 839, 845, 848, 1060
BstX2I RGATCY 2 cut(s) 139, 683
BstYI RGATCY 2 cut(s) 139, 683
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 3 cut(s) 196, 384, 968
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 3 cut(s) 379, 771, 819
BtsCI GGATG 3 cut(s) 52, 309, 809
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 363, 813
Cac8I GCNNGC 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 842
CciI TCATGA 2 cut(s) 1012, 1018
CfoI GCGC 4 cut(s) 266, 372, 374, 1082
Cfr13I GGNCC 3 cut(s) 163, 194, 876
Cfr42I CCGCGG 1 cut(s) 822
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 1 cut(s) 945
Csp6I GTAC 3 cut(s) 211, 255, 1032
CviQI GTAC 3 cut(s) 211, 255, 1032
DdeI CTNAG 4 cut(s) 198, 352, 952, 1001
EaeI YGGCCR 2 cut(s) 382, 966
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 379, 771, 1072
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 163, 876
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 3 cut(s) 163, 194, 876
EcoRII CCWGG 2 cut(s) 37, 158
EcoT14I CCWWGG 3 cut(s) 379, 771, 1072
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 3 cut(s) 379, 771, 1072
FaqI GGGAC 1 cut(s) 176
FbaI TGATCA 5 cut(s) 442, 547, 673, 1015, 1021
FokI GGATG 3 cut(s) 39, 296, 796
FriOI GRGCYC 1 cut(s) 72
FspBI CTAG 2 cut(s) 435, 663
FspI TGCGCA 1 cut(s) 1081
GlaI GCGC 4 cut(s) 265, 371, 373, 1081
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 3 cut(s) 196, 384, 968
HgaI GACGC 1 cut(s) 945
HhaI GCGC 4 cut(s) 266, 372, 374, 1082
Hin6I GCGC 4 cut(s) 264, 370, 372, 1080
HinP1I GCGC 4 cut(s) 264, 370, 372, 1080
HinfI GANTC 5 cut(s) 493, 716, 855, 991, 1056
HphI GGTGA 3 cut(s) 623, 738, 905
Hpy166II GTNNAC 1 cut(s) 854
Hpy188I TCNGA 5 cut(s) 57, 90, 201, 588, 933
Hpy8I GTNNAC 1 cut(s) 854
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 6 cut(s) 95, 280, 559, 638, 889, 990
HpyCH4III ACNGT 2 cut(s) 31, 702
HpyCH4IV ACGT 1 cut(s) 1034
HpyCH4V TGCA 8 cut(s) 11, 180, 406, 691, 833, 862, 923, 975
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 728, 824, 827, 830, 833, 836
HpyF3I CTNAG 4 cut(s) 198, 352, 952, 1001
HpySE526I ACGT 1 cut(s) 1034
HspAI GCGC 4 cut(s) 264, 370, 372, 1080
Ksp22I TGATCA 5 cut(s) 442, 547, 673, 1015, 1021
KspI CCGCGG 1 cut(s) 822
LmnI GCTCC 4 cut(s) 67, 75, 379, 921
Lsp1109I GCAGC 6 cut(s) 715, 817, 839, 845, 848, 1060
LweI GCATC 2 cut(s) 848, 932
MaeI CTAG 2 cut(s) 435, 663
MaeII ACGT 1 cut(s) 1034
MaeIII GTNAC 2 cut(s) 744, 1004
MboII GAAGA 5 cut(s) 103, 208, 434, 467, 975
MflI RGATCY 2 cut(s) 139, 683
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 2 cut(s) 518, 655
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 3 cut(s) 725, 849, 985
MmeI TCCRAC 2 cut(s) 80, 266
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
MseI TTAA 2 cut(s) 945, 1094
MslI CAYNNNNRTG 3 cut(s) 560, 1017, 1023
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 3 cut(s) 275, 821, 830
MspR9I CCNGG 2 cut(s) 39, 160
MvaI CCWGG 2 cut(s) 39, 160
MvnI CGCG 3 cut(s) 264, 372, 821
MwoI GCNNNNNNNGC 7 cut(s) 272, 728, 824, 827, 830, 833, 836
NcoI CCATGG 2 cut(s) 379, 771
NlaIV GGNNCC 4 cut(s) 33, 44, 164, 685
NmuCI GTSAC 1 cut(s) 744
NsbI TGCGCA 1 cut(s) 1081
PagI TCATGA 2 cut(s) 1012, 1018
PasI CCCWGGG 1 cut(s) 159
PauI GCGCGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 493, 1056
PflMI CCANNNNNTGG 1 cut(s) 640
PleI GAGTC 3 cut(s) 724, 849, 985
PpsI GAGTC 3 cut(s) 724, 849, 985
PpuMI RGGWCCY 2 cut(s) 163, 876
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 2 cut(s) 163, 876
Psp6I CCWGG 2 cut(s) 37, 158
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 37, 158
PspN4I GGNNCC 4 cut(s) 33, 44, 164, 685
PspPI GGNCC 3 cut(s) 163, 194, 876
PspPPI RGGWCCY 2 cut(s) 163, 876
PstI CTGCAG 2 cut(s) 13, 835
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 2 cut(s) 139, 683
PteI GCGCGC 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 275, 830
RsaI GTAC 3 cut(s) 212, 256, 1033
RsaNI GTAC 3 cut(s) 211, 255, 1032
RseI CAYNNNNRTG 3 cut(s) 560, 1017, 1023
SacI GAGCTC 1 cut(s) 72
SacII CCGCGG 1 cut(s) 822
SaqAI TTAA 2 cut(s) 945, 1094
Sau96I GGNCC 3 cut(s) 163, 194, 876
SchI GAGTC 3 cut(s) 725, 849, 985
ScrFI CCNGG 2 cut(s) 39, 160
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 848, 932
SfcI CTRYAG 2 cut(s) 9, 831
Sfr303I CCGCGG 1 cut(s) 822
SgrBI CCGCGG 1 cut(s) 822
SinI GGWCC 2 cut(s) 163, 876
SmiMI CAYNNNNRTG 3 cut(s) 560, 1017, 1023
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 2 cut(s) 518, 655
SsiI CCGC 4 cut(s) 262, 819, 821, 824
SspMI CTAG 2 cut(s) 435, 663
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 37, 158
StyI CCWWGG 3 cut(s) 379, 771, 1072
TaaI ACNGT 2 cut(s) 31, 702
TaiI ACGT 1 cut(s) 1037
TaqI TCGA 6 cut(s) 114, 153, 420, 538, 939, 989
TaqII GACCGA 1 cut(s) 407
TasI AATT 2 cut(s) 518, 655
TauI GCSGC 3 cut(s) 821, 824, 827
TfiI GAWTC 2 cut(s) 493, 1056
Tru1I TTAA 2 cut(s) 945, 1094
Tru9I TTAA 2 cut(s) 945, 1094
TscAI CASTG 2 cut(s) 370, 820
TseFI GTSAC 1 cut(s) 744
TseI GCWGC 7 cut(s) 8, 728, 827, 830, 833, 836, 1048
Tsp45I GTSAC 1 cut(s) 744
TspDTI ATGAA 4 cut(s) 120, 578, 871, 975
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 370, 820
Van91I CCANNNNNTGG 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 163, 876
XapI RAATTY 1 cut(s) 518
XspI CTAG 2 cut(s) 435, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.