Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009142

Physical Location & Seq

Genomic Coordinates Reverse (-)

29952873 .. 29957201

Gene Structure 4329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGTCGTCGGAGCTGCAGATTTCGCCGGCGATTCACGACCCGCAAGGTCAAGAGAAGCAGCAGCAAGCCGCCGGAGTCGGGATTTTGCTTCAGATCATGATGCTTGTCCTCTCTTTTGTACTCGGTCATGTCCTTCGCCGTCATAAGTTCTATTATCTACCTGAAGCTAGTGCTTCTCTTCTAATTGGGCTGATCGTTGGTGGTTTAGCGAACATCTCGAACACGGAGACTAGCATAAGGACATGGTTCAATTTCCACGATGAGTTCTTCTTTCTGTTTCTGCTGCCTCCCATCATATTCCAGTCAGGCTTCAGTTTACAACCTAAACCTTTCTTCTCAAACTTTGGAGCCATTGTCACTTTTTCAGTGCTTGGAACTTTTGTAGCTTCCATGGTTACTGGATTGCTTGTGTACCTTGGCGGTGTGATGTTTCTCATGTACAGACTTCCATTCGTCGAGTGTCTCATGTTTGGCTCTCTTATCTCAGCCACTGATCCTGTCACTGTATTGTCGATATTTCAGGAACTTGGTTCAGATGTAAATTTGTATGCCCTGGTGTTTGGAGAATCAGTTTTAAATGATGCTATGGCGATATCTCTGTACAGGACAATGTCCTTGGTGAGAAGTCATTCCTCTGGACAGAATTTCTTTATGGTGATAGTCAGGTTTCTCGAAACGTTTGTCGGTTCAATGTCTGCAGGCGTTGGAGTTGGATTCACCTCTGCTCTCCTATTCAAGTATGCAGGACTGGATGTTGACAATCTACAGAACTTGGAGTGCTGTCTCTTCGTACTTTTTCCATATTTCTCTTACATGCTTGCTGAAGGTCTCAGTCTATCTGGCATCGTATCGATTCTATTTACAGGGATTGTCATGAAACATTATACCTACTCAAACTTGTCTGCAAATTCTCAGCGATTTGTGTCTGCATTTTTCCATCTGATATCTTCACTGGCAGAGACATTTGTGTTCATCTACATGGGTTTTGATATTGCCATGGAAAAGCATAGTTGGTCACACTTGGGATTCATATTTTTTTCTATTTTATTTATCGTAATTGCAAGGGCAGCTAATGTGTTTGGTTGTGGATATTTGGTCAATCTGGCACGACCTGCTCATAGGAAAATACCAATGACACATCAAAAAGCACTTTGGTACAGTGGACTTCGAGGTGCTATGGCATTTGCTCTTGCTCTGCAATCTGTTCACGATCTTCCAGAAGGACATGGTCAAACTATATTCACTGCAACTACAGCCATTGTTGTTCTGACGGTGTTGCTGATTGGAGGATCGACTGGTACAATGCTAGAAGCCCTAGAGGTTGTAGGTGATAGCCACGATACATCCTTAGGTGATGGATTTGAGGTGGTGAACAGTCGTTATATGACTAGTTATGATGATGAAGATACACCGCCAGGAAGTGGATTCAGGACAAAACTAAGAGAGTTCCATAAGAGTGCGGCATCATTCACAGAACTAGATAGGAATTACCTAACACCGTTCTTCACAAGTAACAACGGAGATTATGATGATGAGGGTAACATGGAGCAACACCATGAAGAACGAATCCCATTTACTAGAAGAGGAAATCTAAATAACCGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

535

Amino Acids

59.31

Weight (kDa)

5.68

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	39 - 437	2e-62	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54370 AT1G79610
fragaria_vesca	FvH4_3g00030 FvH4_3g00030 FvH4_3g00030
malus_domestica	MD00G1208600.v1.1 MD10G1342600.v1.1
prunus_persica	Prupe.4G000200_v2.0.a1 Prupe.4G000200_v2.0.a1
pyrus_communis	pycom10g29190
rosa_chinensis	RchiOBHm_Chr5g0000031 RchiOBHm_Chr5g0000041
rosa_laevigata	RLG00000030836
rosa_multiflora	Rmu_ssc0000243.1_g000029
rosa_roxburghii	Rroxscaffold_1G00076030 Rroxscaffold_2G00107680
rosa_rugosa	Rorug04G0380800
rosa_samantha	Rh5AG000400 Rh5BG001600 Rh5CG000400 Rh5DG000400
rosa_wichuraiana	Rw5G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1120
AccB7I	CCANNNNNTGG	1 cut(s)	1421
AccII	CGCG	1 cut(s)	1602
AciI	CCGC	7 cut(s)	41, 69, 420, 1412, 1460, 1600, 1602
AclI	AACGTT	1 cut(s)	677
AclWI	GGATC	2 cut(s)	488, 1297
AcsI	RAATTY	3 cut(s)	541, 643, 907
AcuI	CTGAAG	4 cut(s)	74, 183, 295, 843
AfaI	GTAC	7 cut(s)	120, 413, 440, 602, 792, 1157, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	78, 1421
AgsI	TTSAA	3 cut(s)	250, 690, 736
AhlI	ACTAGT	1 cut(s)	1388
AjnI	CCWGG	2 cut(s)	552, 1414
AluBI	AGCT	4 cut(s)	13, 167, 386, 1070
AluI	AGCT	4 cut(s)	13, 167, 386, 1070
Alw26I	GTCTC	5 cut(s)	221, 467, 788, 833, 953
AlwI	GGATC	2 cut(s)	488, 1297
AlwNI	CAGNNNCTG	1 cut(s)	491
ApeKI	GCWGC	5 cut(s)	13, 58, 61, 283, 1067
ApoI	RAATTY	3 cut(s)	541, 643, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	666, 698
Asp700I	GAANNNNTTC	1 cut(s)	628
AsuHPI	GGTGA	6 cut(s)	631, 667, 709, 1340, 1364, 1381
AxyI	CCTNAGG	1 cut(s)	1348
BbvI	GCAGC	4 cut(s)	70, 73, 270, 1079
BccI	CCATC	3 cut(s)	299, 945, 1349
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	554, 1416
BcoDI	GTCTC	5 cut(s)	221, 467, 788, 833, 953
BcuI	ACTAGT	1 cut(s)	1388
BfaI	CTAG	7 cut(s)	168, 231, 1307, 1316, 1389, 1478, 1578
BfmI	CTRYAG	4 cut(s)	14, 696, 764, 1251
BfuAI	ACCTGC	1 cut(s)	1120
BisI	GCNGC	8 cut(s)	14, 59, 62, 69, 284, 1068, 1461, 1603
BlsI	GCNGC	8 cut(s)	15, 60, 63, 70, 285, 1069, 1462, 1604
Bme1390I	CCNGG	2 cut(s)	554, 1416
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	554, 1416
BmsI	GCATC	4 cut(s)	90, 571, 852, 1472
Bsa29I	ATCGAT	1 cut(s)	851
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	6 cut(s)	390, 415, 552, 615, 996, 1600
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 1421
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	5 cut(s)	301, 403, 753, 957, 1300
Bse21I	CCTNAGG	1 cut(s)	1348
BseBI	CCWGG	2 cut(s)	554, 1416
BseCI	ATCGAT	1 cut(s)	851
BseDI	CCNNGG	6 cut(s)	390, 415, 552, 615, 996, 1600
BseGI	GGATG	2 cut(s)	757, 1343
BseLI	CCNNNNNNNGG	2 cut(s)	78, 1421
BseMII	CTCAG	3 cut(s)	498, 844, 926
BseNI	ACTGG	5 cut(s)	301, 403, 753, 957, 1300
BseXI	GCAGC	4 cut(s)	70, 73, 270, 1079
Bsh1236I	CGCG	1 cut(s)	1602
BshVI	ATCGAT	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	26, 72
BslI	CCNNNNNNNGG	2 cut(s)	78, 1421
BsmAI	GTCTC	5 cut(s)	221, 467, 788, 833, 953
Bso31I	GGTCTC	1 cut(s)	833
Bsp1407I	TGTACA	2 cut(s)	438, 600
Bsp143I	GATC	5 cut(s)	93, 192, 493, 1210, 1289
Bsp19I	CCATGG	2 cut(s)	390, 996
BspACI	CCGC	7 cut(s)	41, 69, 420, 1412, 1460, 1600, 1602
BspCNI	CTCAG	3 cut(s)	497, 843, 925
BspDI	ATCGAT	1 cut(s)	851
BspFNI	CGCG	1 cut(s)	1602
BspHI	TCATGA	2 cut(s)	96, 873
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	2 cut(s)	18, 700
BspMI	ACCTGC	1 cut(s)	1120
BspPI	GGATC	2 cut(s)	488, 1297
BspTNI	GGTCTC	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	25
BsrGI	TGTACA	2 cut(s)	438, 600
BsrI	ACTGG	5 cut(s)	301, 403, 753, 957, 1300
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	6 cut(s)	390, 415, 552, 615, 996, 1600
BssMI	GATC	5 cut(s)	93, 192, 493, 1210, 1289
BssT1I	CCWWGG	4 cut(s)	390, 415, 615, 996
Bst2UI	CCWGG	2 cut(s)	554, 1416
Bst4CI	ACNGT	5 cut(s)	505, 1160, 1273, 1376, 1500
Bst6I	CTCTTC	3 cut(s)	183, 791, 1576
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstAUI	TGTACA	2 cut(s)	438, 600
BstC8I	GCNNGC	4 cut(s)	27, 66, 700, 819
BstDEI	CTNAG	5 cut(s)	484, 830, 912, 1348, 1439
BstDSI	CCRYGG	3 cut(s)	390, 996, 1600
BstF5I	GGATG	2 cut(s)	757, 1343
BstFNI	CGCG	1 cut(s)	1602
BstKTI	GATC	5 cut(s)	96, 195, 496, 1213, 1292
BstMAI	GTCTC	5 cut(s)	221, 467, 788, 833, 953
BstMBI	GATC	5 cut(s)	93, 192, 493, 1210, 1289
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 1067, 1112, 1253
BstNI	CCWGG	2 cut(s)	554, 1416
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	552, 1414
BstSFI	CTRYAG	4 cut(s)	14, 696, 764, 1251
BstUI	CGCG	1 cut(s)	1602
BstV1I	GCAGC	4 cut(s)	70, 73, 270, 1079
Bsu15I	ATCGAT	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	1348
BsuTUI	ATCGAT	1 cut(s)	851
BtgI	CCRYGG	3 cut(s)	390, 996, 1600
BtsCI	GGATG	2 cut(s)	757, 1343
BtsI	GCAGTG	1 cut(s)	1242
BtsIMutI	CAGTG	6 cut(s)	372, 489, 501, 950, 1165, 1242
BveI	ACCTGC	1 cut(s)	1120
Cac8I	GCNNGC	4 cut(s)	27, 66, 700, 819
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	2 cut(s)	96, 873
Cfr10I	RCCGGY	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	1603
ClaI	ATCGAT	1 cut(s)	851
Csp6I	GTAC	7 cut(s)	119, 412, 439, 601, 791, 1156, 1299
CviQI	GTAC	7 cut(s)	119, 412, 439, 601, 791, 1156, 1299
DdeI	CTNAG	5 cut(s)	484, 830, 912, 1348, 1439
DpnI	GATC	5 cut(s)	95, 194, 495, 1212, 1291
DpnII	GATC	5 cut(s)	93, 192, 493, 1210, 1289
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	3 cut(s)	183, 791, 1576
EarI	CTCTTC	3 cut(s)	183, 791, 1576
Eco130I	CCWWGG	4 cut(s)	390, 415, 615, 996
Eco31I	GGTCTC	1 cut(s)	833
Eco32I	GATATC	2 cut(s)	594, 945
Eco57I	CTGAAG	4 cut(s)	74, 183, 295, 843
Eco81I	CCTNAGG	1 cut(s)	1348
EcoRII	CCWGG	2 cut(s)	552, 1414
EcoRV	GATATC	2 cut(s)	594, 945
EcoT14I	CCWWGG	4 cut(s)	390, 415, 615, 996
ErhI	CCWWGG	4 cut(s)	390, 415, 615, 996
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	8 cut(s)	14, 59, 62, 69, 284, 1068, 1461, 1603
FokI	GGATG	2 cut(s)	764, 1330
Fsp4HI	GCNGC	8 cut(s)	14, 59, 62, 69, 284, 1068, 1461, 1603
FspBI	CTAG	7 cut(s)	168, 231, 1307, 1316, 1389, 1478, 1578
GluI	GCNGC	8 cut(s)	14, 59, 62, 69, 284, 1068, 1461, 1603
HapII	CCGG	2 cut(s)	26, 72
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	8 cut(s)	31, 75, 566, 714, 853, 1026, 1425, 1566
HpaII	CCGG	2 cut(s)	26, 72
HphI	GGTGA	6 cut(s)	631, 667, 709, 1340, 1364, 1381
Hpy166II	GTNNAC	6 cut(s)	317, 412, 757, 1163, 1207, 1372
Hpy188I	TCNGA	5 cut(s)	10, 93, 535, 942, 1269
Hpy8I	GTNNAC	6 cut(s)	317, 412, 757, 1163, 1207, 1372
Hpy99I	CGWCG	2 cut(s)	10, 458
HpyAV	CCTTC	3 cut(s)	143, 818, 1214
HpyCH4III	ACNGT	5 cut(s)	505, 1160, 1273, 1376, 1500
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	8 cut(s)	16, 698, 743, 905, 929, 1061, 1198, 1247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 1067, 1112, 1253
HpyF3I	CTNAG	5 cut(s)	484, 830, 912, 1348, 1439
HpySE526I	ACGT	1 cut(s)	677
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
KspI	CCGCGG	1 cut(s)	1603
Kzo9I	GATC	5 cut(s)	93, 192, 493, 1210, 1289
LmnI	GCTCC	3 cut(s)	10, 347, 1546
Lsp1109I	GCAGC	4 cut(s)	70, 73, 270, 1079
LweI	GCATC	4 cut(s)	90, 571, 852, 1472
MaeI	CTAG	7 cut(s)	168, 231, 1307, 1316, 1389, 1478, 1578
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	6 cut(s)	355, 394, 499, 1014, 1511, 1538
MalI	GATC	5 cut(s)	95, 194, 495, 1212, 1291
MboI	GATC	5 cut(s)	93, 192, 493, 1210, 1289
MluCI	AATT	7 cut(s)	183, 250, 541, 643, 907, 1056, 1486
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	685, 691
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	628
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	977, 1455
MspA1I	CMGCKG	1 cut(s)	1602
MspI	CCGG	2 cut(s)	26, 72
MspR9I	CCNGG	2 cut(s)	554, 1416
MvaI	CCWGG	2 cut(s)	554, 1416
MvnI	CGCG	1 cut(s)	1602
MwoI	GCNNNNNNNGC	4 cut(s)	22, 1067, 1112, 1253
NaeI	GCCGGC	1 cut(s)	27
NcoI	CCATGG	2 cut(s)	390, 996
NdeII	GATC	5 cut(s)	93, 192, 493, 1210, 1289
NgoMIV	GCCGGC	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	3 cut(s)	355, 499, 1014
NspI	RCATGY	1 cut(s)	817
PagI	TCATGA	2 cut(s)	96, 873
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	7 cut(s)	31, 566, 714, 853, 1026, 1425, 1566
PflFI	GACNNNGTC	2 cut(s)	610, 1227
PflMI	CCANNNNNTGG	1 cut(s)	1421
PkrI	GCNGC	8 cut(s)	15, 60, 63, 70, 285, 1069, 1462, 1604
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	677
Psp6I	CCWGG	2 cut(s)	552, 1414
PspGI	CCWGG	2 cut(s)	552, 1414
PspN4I	GGNNCC	1 cut(s)	349
PstI	CTGCAG	2 cut(s)	18, 700
PstNI	CAGNNNCTG	1 cut(s)	491
PsyI	GACNNNGTC	2 cut(s)	610, 1227
RsaI	GTAC	7 cut(s)	120, 413, 440, 602, 792, 1157, 1300
RsaNI	GTAC	7 cut(s)	119, 412, 439, 601, 791, 1156, 1299
RseI	CAYNNNNRTG	2 cut(s)	977, 1455
SacII	CCGCGG	1 cut(s)	1603
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	8 cut(s)	14, 59, 62, 69, 284, 1068, 1461, 1603
Sau3AI	GATC	5 cut(s)	93, 192, 493, 1210, 1289
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	554, 1416
SfaNI	GCATC	4 cut(s)	90, 571, 852, 1472
SfcI	CTRYAG	4 cut(s)	14, 696, 764, 1251
Sfr303I	CCGCGG	1 cut(s)	1603
SgrAI	CRCCGGYG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	1603
SmiMI	CAYNNNNRTG	2 cut(s)	977, 1455
SpeI	ACTAGT	1 cut(s)	1388
Sse9I	AATT	7 cut(s)	183, 250, 541, 643, 907, 1056, 1486
SsiI	CCGC	7 cut(s)	41, 69, 420, 1412, 1460, 1600, 1602
SspMI	CTAG	7 cut(s)	168, 231, 1307, 1316, 1389, 1478, 1578
StyD4I	CCNGG	2 cut(s)	552, 1414
StyI	CCWWGG	4 cut(s)	390, 415, 615, 996
TaaI	ACNGT	5 cut(s)	505, 1160, 1273, 1376, 1500
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	7 cut(s)	218, 456, 512, 672, 851, 1168, 1292
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	7 cut(s)	183, 250, 541, 643, 907, 1056, 1486
TatI	WGTACW	3 cut(s)	118, 438, 600
TauI	GCSGC	3 cut(s)	71, 1463, 1605
TfiI	GAWTC	7 cut(s)	31, 566, 714, 853, 1026, 1425, 1566
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	6 cut(s)	372, 496, 508, 957, 1165, 1249
TseFI	GTSAC	3 cut(s)	355, 499, 1014
TseI	GCWGC	5 cut(s)	13, 58, 61, 283, 1067
Tsp45I	GTSAC	3 cut(s)	355, 499, 1014
TspDTI	ATGAA	5 cut(s)	890, 961, 1018, 1416, 1572
TspGWI	ACGGA	2 cut(s)	239, 1533
TspRI	CASTG	6 cut(s)	372, 496, 508, 957, 1165, 1249
Tth111I	GACNNNGTC	2 cut(s)	610, 1227
Van91I	CCANNNNNTGG	1 cut(s)	1421
XapI	RAATTY	3 cut(s)	541, 643, 907
XceI	RCATGY	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	7 cut(s)	168, 231, 1307, 1316, 1389, 1478, 1578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.