Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009142

Physical Location & Seq

Genomic Coordinates Reverse (-)

58590 .. 64152

Gene Structure 5563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28160

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTCACTGAGATGTATTGCTCAAACAACATTGACAATTTTTTCCCCTCCTTTTGCTTTGAAGTTGCTTATGCTCTATTATATAAATGTCTCCTTGAGTCTGTATTTTGTTTCTTAGTTACTAATGCATTGATATTGCTGTGCAGGCATCGGAGTTGGCTTTACTTCTGCTTTGATATCCTTTTGTTTCATTACTTTTATATTATCTTTGTCAATCTCTATCAATCGACTTTTGATAAGCTACTGTGGGTAGATTGTATTTGGGAAACCTTAATTGTGAAAACCTTTTCAAGTATGCAGGGTTGGATATTGACAAGTGATCTTCAGAACTTGGAGTGCTGTCTTTTTGTCCTTTTCCCATATTTCTCGTACATGCTTGCAGAAGGTCTTGGGCTCTCTGGTATTGTGTCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCAGAGAACTCTCAACGATTTGTTTCAGCCTTTTTCCATTTGATCTCATCACTAGCAGAGACATTTGTATTTATATACATGGGCTTTGATATCGCTATGGAAAAGCATAGCTGGTCACATGTTGGATTCATTTTTTTCTCAATTATATTTATTGGAGTAGCAAGGGCAGTTAATGTTTTTTCTTGTGCATATTTGGTCAACTTATCTCGACCTTCACATAGACAGATACCAGTAAAACATCAAAAAGCACTTTGGTACAGTGGACTTCGAGGGGCCATGGCTTTTGCCCTCGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGTCAGACTATATTCACTGCAACTACTGCGATAGTTGTTCTGACGGTATTATTAATTGGAGGTTCAACGGGTACAATGCTGGAAGCTTTACAAGTTGTAGGTGATGAGAGTACATTGGGTGAAAGCTTTGATGGTAACAATGGCTACGTGGCTCCTTCTTATGACGATGACGAGGAAGGATCATCAGGAAACAGGATCAAGATGAAACTGAAGGAATTCCACAAGAGTGCAGCTTCATTCACAGCTTTGGATCGAAACTATCTCACCCCGTTCTTTACAAGTCAGAATGGCGATGAAGCAGAAGAGTTTGATGAGCCTGTGTCTAGTTCTACAAGACCAGTTGGTGGTTTCCACGGTCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

383

Amino Acids

43.25

Weight (kDa)

5.3

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	103 - 290	2.5e-25	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54370 AT1G79610
fragaria_vesca	FvH4_3g00030 FvH4_3g00030 FvH4_3g00030
malus_domestica	MD00G1208600.v1.1 MD10G1342600.v1.1
prunus_persica	Prupe.4G000200_v2.0.a1 Prupe.4G000200_v2.0.a1
pyrus_communis	pycom10g29190
rosa_chinensis	RchiOBHm_Chr5g0000031 RchiOBHm_Chr5g0000041
rosa_laevigata	RLG00000030836
rosa_multiflora	Rmu_ssc0000243.1_g000029
rosa_roxburghii	Rroxscaffold_1G00076030 Rroxscaffold_2G00107680
rosa_rugosa	Rorug04G0380800
rosa_samantha	Rh5AG000400 Rh5BG001600 Rh5CG000400 Rh5DG000400
rosa_wichuraiana	Rw5G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1130
AclWI	GGATC	3 cut(s)	973, 989, 1044
AcsI	RAATTY	2 cut(s)	454, 1001
AcuI	CTGAAG	2 cut(s)	308, 1016
AfaI	GTAC	4 cut(s)	371, 716, 859, 898
AfiI	CCNNNNNNNGG	1 cut(s)	1130
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	4 cut(s)	62, 291, 453, 852
AleI	CACNNNNGTG	1 cut(s)	1011
AluBI	AGCT	6 cut(s)	241, 570, 872, 912, 1019, 1031
AluI	AGCT	6 cut(s)	241, 570, 872, 912, 1019, 1031
Alw26I	GTCTC	2 cut(s)	95, 512
AlwI	GGATC	3 cut(s)	973, 989, 1044
AoxI	GGCC	1 cut(s)	732
ApeKI	GCWGC	1 cut(s)	1016
ApoI	RAATTY	2 cut(s)	454, 1001
AseI	ATTAAT	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	3 cut(s)	899, 917, 1042
BanII	GRGCYC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	1028
BccI	CCATC	1 cut(s)	911
BcoDI	GTCTC	2 cut(s)	95, 512
BfaI	CTAG	2 cut(s)	512, 1110
BisI	GCNGC	1 cut(s)	1017
BlsI	GCNGC	1 cut(s)	1018
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	2 cut(s)	733, 939
BmsI	GCATC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	934
BsaJI	CCNNGG	2 cut(s)	735, 1138
Bsc4I	CCNNNNNNNGG	1 cut(s)	1130
Bse1I	ACTGG	2 cut(s)	689, 1124
BseDI	CCNNGG	2 cut(s)	735, 1138
BseLI	CCNNNNNNNGG	1 cut(s)	1130
BseNI	ACTGG	2 cut(s)	689, 1124
BseXI	GCAGC	1 cut(s)	1028
BsgI	GTGCAG	2 cut(s)	163, 1035
BshFI	GGCC	1 cut(s)	734
BslI	CCNNNNNNNGG	1 cut(s)	1130
BsmAI	GTCTC	2 cut(s)	95, 512
BsnI	GGCC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
Bsp19I	CCATGG	1 cut(s)	735
BspANI	GGCC	1 cut(s)	734
BspHI	TCATGA	2 cut(s)	432, 766
BspLI	GGNNCC	2 cut(s)	733, 939
BspPI	GGATC	3 cut(s)	973, 989, 1044
BsrI	ACTGG	2 cut(s)	689, 1124
BssECI	CCNNGG	2 cut(s)	735, 1138
BssMI	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	246, 719, 832, 1142
Bst6I	CTCTTC	1 cut(s)	1083
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	934
BstC8I	GCNNGC	2 cut(s)	146, 378
BstDEI	CTNAG	2 cut(s)	9, 115
BstDSI	CCRYGG	2 cut(s)	735, 1138
BstKTI	GATC	6 cut(s)	322, 504, 772, 968, 984, 1039
BstMAI	GTCTC	2 cut(s)	95, 512
BstMBI	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 812
BstNSI	RCATGY	2 cut(s)	376, 581
BstV1I	GCAGC	1 cut(s)	1028
BstXI	CCANNNNNNTGG	1 cut(s)	1145
BsuRI	GGCC	1 cut(s)	734
BtgI	CCRYGG	2 cut(s)	735, 1138
BtgZI	GCGATG	1 cut(s)	1092
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	3 cut(s)	6, 724, 801
Cac8I	GCNNGC	2 cut(s)	146, 378
CciI	TCATGA	2 cut(s)	432, 766
Cfr13I	GGNCC	1 cut(s)	732
Csp6I	GTAC	4 cut(s)	370, 715, 858, 897
CviAII	CATG	8 cut(s)	373, 433, 538, 578, 736, 767, 785, 1145
CviQI	GTAC	4 cut(s)	370, 715, 858, 897
DdeI	CTNAG	2 cut(s)	9, 115
DpnI	GATC	6 cut(s)	321, 503, 771, 967, 983, 1038
DpnII	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
Eam1104I	CTCTTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	1083
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	396
Eco32I	GATATC	2 cut(s)	178, 550
Eco57I	CTGAAG	2 cut(s)	308, 1016
EcoRI	GAATTC	1 cut(s)	1001
EcoRV	GATATC	2 cut(s)	178, 550
EcoT14I	CCWWGG	1 cut(s)	735
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	8 cut(s)	376, 436, 541, 581, 739, 770, 788, 1148
FatI	CATG	8 cut(s)	372, 432, 537, 577, 735, 766, 784, 1144
Fnu4HI	GCNGC	1 cut(s)	1017
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	1017
FspBI	CTAG	2 cut(s)	512, 1110
GluI	GCNGC	1 cut(s)	1017
HaeIII	GGCC	1 cut(s)	734
Hin1II	CATG	8 cut(s)	376, 436, 541, 581, 739, 770, 788, 1148
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	2 cut(s)	870, 910
HinfI	GANTC	2 cut(s)	98, 585
HphI	GGTGA	3 cut(s)	899, 917, 1042
Hpy166II	GTNNAC	3 cut(s)	420, 658, 722
Hpy188I	TCNGA	6 cut(s)	153, 327, 463, 792, 828, 1071
Hpy188III	TCNNGA	6 cut(s)	433, 666, 767, 776, 972, 985
Hpy8I	GTNNAC	3 cut(s)	420, 658, 722
HpyAV	CCTTC	6 cut(s)	377, 681, 773, 951, 956, 991
HpyCH4III	ACNGT	4 cut(s)	246, 719, 832, 1142
HpyCH4IV	ACGT	1 cut(s)	933
HpyCH4V	TGCA	8 cut(s)	128, 144, 298, 380, 647, 757, 806, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 812
HpyF3I	CTNAG	2 cut(s)	9, 115
HpySE526I	ACGT	1 cut(s)	933
Hsp92II	CATG	8 cut(s)	376, 436, 541, 581, 739, 770, 788, 1148
Kzo9I	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	1 cut(s)	1028
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	512, 1110
MaeII	ACGT	1 cut(s)	933
MaeIII	GTNAC	4 cut(s)	4, 118, 573, 920
MalI	GATC	6 cut(s)	321, 503, 771, 967, 983, 1038
MboI	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
MboII	GAAGA	3 cut(s)	314, 764, 1100
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	6 cut(s)	37, 273, 454, 600, 840, 1001
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	284, 562
MnlI	CCTC	5 cut(s)	58, 722, 758, 839, 952
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	4 cut(s)	272, 630, 839, 1150
MslI	CAYNNNNRTG	4 cut(s)	11, 425, 1011, 1143
MwoI	GCNNNNNNNGC	2 cut(s)	145, 812
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
NlaIII	CATG	8 cut(s)	376, 436, 541, 581, 739, 770, 788, 1148
NlaIV	GGNNCC	2 cut(s)	733, 939
NmuCI	GTSAC	2 cut(s)	4, 573
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	376, 581
OliI	CACNNNNGTG	1 cut(s)	1011
PagI	TCATGA	2 cut(s)	432, 766
PciI	ACATGT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	1 cut(s)	585
PflFI	GACNNNGTC	1 cut(s)	786
PflMI	CCANNNNNTGG	1 cut(s)	1130
PkrI	GCNGC	1 cut(s)	1018
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	934
PscI	ACATGT	1 cut(s)	577
PshBI	ATTAAT	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	733, 939
PspPI	GGNCC	1 cut(s)	732
PsyI	GACNNNGTC	1 cut(s)	786
RsaI	GTAC	4 cut(s)	371, 716, 859, 898
RsaNI	GTAC	4 cut(s)	370, 715, 858, 897
RseI	CAYNNNNRTG	4 cut(s)	11, 425, 1011, 1143
SaqAI	TTAA	4 cut(s)	272, 630, 839, 1150
SatI	GCNGC	1 cut(s)	1017
Sau3AI	GATC	6 cut(s)	319, 501, 769, 965, 981, 1036
Sau96I	GGNCC	1 cut(s)	732
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	4 cut(s)	11, 425, 1011, 1143
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	6 cut(s)	37, 273, 454, 600, 840, 1001
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	2 cut(s)	512, 1110
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	246, 719, 832, 1142
TaiI	ACGT	1 cut(s)	936
TaqI	TCGA	4 cut(s)	227, 667, 727, 1039
TasI	AATT	6 cut(s)	37, 273, 454, 600, 840, 1001
TatI	WGTACW	1 cut(s)	896
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	4 cut(s)	272, 630, 839, 1150
Tru9I	TTAA	4 cut(s)	272, 630, 839, 1150
TscAI	CASTG	3 cut(s)	13, 724, 808
TseFI	GTSAC	2 cut(s)	4, 573
TseI	GCWGC	1 cut(s)	1016
Tsp45I	GTSAC	2 cut(s)	4, 573
TspDTI	ATGAA	7 cut(s)	179, 449, 577, 755, 1004, 1011, 1095
TspRI	CASTG	3 cut(s)	13, 724, 808
Tth111I	GACNNNGTC	1 cut(s)	786
Van91I	CCANNNNNTGG	1 cut(s)	1130
VspI	ATTAAT	1 cut(s)	839
XapI	RAATTY	2 cut(s)	454, 1001
XceI	RCATGY	2 cut(s)	376, 581
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	2 cut(s)	512, 1110
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.