Rmu_ssc0000243.1_g000029

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
Physical Location & Seq
Forward (+)
107797 .. 114416
6620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000243.1_g000029.1.cds

Sequence Viewer

Length: 1587 bp
atggacgaccaaccccagctgatggcgatgcagatatcaccggccgattccaatggtaccactccggccaaggagcagcaggccgccggagttggcattcttctccagatcatgatgctcgtcctctcttttgtcctaggtcatgtcctacgccgccacaaattctattatctccccgaggccagcgcttcgcttttgataggtttaattgttggtggacttgctaacatctctgataccgaaactagcatcagggcctggttcaattttcacgaggatctttcacctaaacctttcttctctaactttggagccatcgtcactttcgctatccttggaacctttatagcttctgttgtcactggcgttctagtctaccttggcggtctgatatacctcacctacagacttccatttgtggagtgcttgatgtttggtgctcttatatcagcgaccgatccagtcactgtcttgtccatctttcaggaacttggcacagatatgaacttgtatgctctggtgtttggggaatctgttttgaatgatgcgatggcaatttccttgtacaggacgatgtccctggtcaggagtcatgcatcatctggagaaaacttcttcatggttatcgtcaggtttcttgagacctttgtcggttcaatgtctgcaggcatcggagttggctttacttctgctttgatatccttttgtttcattacttttatattatctttgtcaatctggttggatattgacaatcttcagaacttggagtgctgtctttttgtccttttcccatatttctcgtacatgcttgcagaaggtctcgggctctctggtattgtgtcaatattgttcacaggaatggtcatgaagcattacacgtattcaaatttgtcagagaactctcaacgatttgtttcagcctttttccatttgatctcatcactagcagagacatttgtatttatatacatgggctttgatatcgctatggaaaagcatagctggtcacatgttggattcatttttttctcaattatatttattggagtagcaagggcagttaatgttttttcttgtgcatatttggtcaacttatctcgaccttcacatagacagataccagtaaaacatcaaaaagcactttggtacagtggacttcgaggggccatggcttttgccctcgctctgcaatcagttcatgatcttccagaaggacatggtcagactatattcactgcaactactgcgatagttgttctgacggtattattaattggaggttcaacgggtacaatgctggaagctttacaagttgtaggtgatgagagtacattgggtgaaagctttgatggtaacaatggctacgtggctccttcttatgacgatgacgaggaaggatcatcaggaaacaggatcaagatgaaactgaaggaattccacaagagtgcagcttcattcacagctttggatcgaaactatctcaccccgttctttacaagtcagaatggcgatgaagcagaagagtttgatgagcctgtgtctagttctacaagaccagttggtggtttccacggtcatggttaa

Protein Analysis

528

Amino Acids

57.81

Weight (kDa)

5.13

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 2 cut(s) 22, 1565
AccI GTMKAC 1 cut(s) 375
AciI CCGC 3 cut(s) 84, 154, 384
AclWI GGATC 5 cut(s) 285, 452, 1408, 1424, 1479
AcoI YGGCCR 2 cut(s) 42, 66
AcsI RAATTY 3 cut(s) 161, 889, 1436
AcuI CTGAAG 2 cut(s) 743, 1451
AfaI GTAC 6 cut(s) 58, 566, 806, 1151, 1294, 1333
AfeI AGCGCT 1 cut(s) 187
AfiI CCNNNNNNNGG 4 cut(s) 22, 567, 585, 1565
AflIII ACRYGT 2 cut(s) 879, 1012
AgsI TTSAA 5 cut(s) 265, 541, 657, 888, 1287
AjnI CCWGG 2 cut(s) 257, 579
AleI CACNNNNGTG 1 cut(s) 1446
AluBI AGCT 7 cut(s) 19, 350, 1005, 1307, 1347, 1454, 1466
AluI AGCT 7 cut(s) 19, 350, 1005, 1307, 1347, 1454, 1466
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 3 cut(s) 635, 827, 947
AlwI GGATC 5 cut(s) 285, 452, 1408, 1424, 1479
AlwNI CAGNNNCTG 2 cut(s) 258, 467
Ama87I CYCGRG 2 cut(s) 176, 824
Aor51HI AGCGCT 1 cut(s) 187
AoxI GGCC 6 cut(s) 42, 66, 81, 180, 255, 1167
ApeKI GCWGC 2 cut(s) 76, 1451
ApoI RAATTY 3 cut(s) 161, 889, 1436
AseI ATTAAT 1 cut(s) 1274
Asp700I GAANNNNTTC 1 cut(s) 1436
Asp718I GGTACC 1 cut(s) 56
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 255, 1167
AsuHPI GGTGA 6 cut(s) 30, 276, 391, 1334, 1352, 1477
AvaI CYCGRG 2 cut(s) 176, 824
AvrII CCTAGG 1 cut(s) 136
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 831
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 88, 1463
BccI CCATC 5 cut(s) 16, 323, 485, 544, 1346
BciT130I CCWGG 2 cut(s) 259, 581
BcoDI GTCTC 3 cut(s) 635, 827, 947
BfaI CTAG 5 cut(s) 137, 246, 371, 947, 1545
BfmI CTRYAG 2 cut(s) 403, 663
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 4 cut(s) 77, 84, 154, 1452
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 4 cut(s) 78, 85, 155, 1453
Bme1390I CCNGG 2 cut(s) 259, 581
BmeT110I CYCGRG 2 cut(s) 176, 824
BmgT120I GGNCC 2 cut(s) 255, 1167
BmiI GGNNCC 5 cut(s) 58, 313, 340, 1168, 1374
BmrFI CCNGG 2 cut(s) 259, 581
BmsI GCATC 6 cut(s) 18, 105, 258, 535, 605, 678
BoxI GACNNNNGTC 1 cut(s) 647
BpmI CTGGAG 2 cut(s) 89, 624
BpuEI CTTGAG 1 cut(s) 659
BsaAI YACGTR 2 cut(s) 882, 1369
BsaI GGTCTC 2 cut(s) 635, 827
BsaJI CCNNGG 8 cut(s) 69, 136, 177, 334, 379, 579, 1170, 1573
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 567, 585, 1565
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 4 cut(s) 367, 461, 1124, 1559
BseBI CCWGG 2 cut(s) 259, 581
BseDI CCNNGG 8 cut(s) 69, 136, 177, 334, 379, 579, 1170, 1573
BseLI CCNNNNNNNGG 4 cut(s) 22, 567, 585, 1565
BseNI ACTGG 4 cut(s) 367, 461, 1124, 1559
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 88, 1463
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 1470
Bsh1285I CGRYCG 2 cut(s) 45, 456
BshFI GGCC 6 cut(s) 44, 68, 83, 182, 257, 1169
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 2 cut(s) 45, 456
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 2 cut(s) 176, 824
BsiSI CCGG 3 cut(s) 41, 65, 87
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 4 cut(s) 22, 567, 585, 1565
BsmAI GTCTC 3 cut(s) 635, 827, 947
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 6 cut(s) 44, 68, 83, 182, 257, 1169
Bso31I GGTCTC 2 cut(s) 635, 827
BsoBI CYCGRG 2 cut(s) 176, 824
Bsp1286I GDGCHC 2 cut(s) 442, 831
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 3 cut(s) 84, 154, 384
BspANI GGCC 6 cut(s) 44, 68, 83, 182, 257, 1169
BspHI TCATGA 3 cut(s) 111, 867, 1201
BspLI GGNNCC 5 cut(s) 58, 313, 340, 1168, 1374
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 5 cut(s) 285, 452, 1408, 1424, 1479
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 635, 827
BsrFI RCCGGY 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 4 cut(s) 367, 461, 1124, 1559
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 8 cut(s) 69, 136, 177, 334, 379, 579, 1170, 1573
BssMI GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 5 cut(s) 69, 136, 334, 379, 1170
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 259, 581
Bst4CI ACNGT 4 cut(s) 469, 1154, 1267, 1577
Bst6I CTCTTC 1 cut(s) 1518
BstAPI GCANNNNNTGC 1 cut(s) 1247
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 2 cut(s) 882, 1369
BstC8I GCNNGC 4 cut(s) 81, 184, 667, 813
BstDSI CCRYGG 2 cut(s) 1170, 1573
BstENI CCTNNNNNAGG 1 cut(s) 565
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 8 cut(s) 111, 280, 460, 939, 1207, 1403, 1419, 1474
BstMAI GTCTC 3 cut(s) 635, 827, 947
BstMBI GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
BstMCI CGRYCG 2 cut(s) 45, 456
BstMWI GCNNNNNNNGC 1 cut(s) 1247
BstNI CCWGG 2 cut(s) 259, 581
BstNSI RCATGY 2 cut(s) 811, 1016
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 257, 579
BstSFI CTRYAG 2 cut(s) 403, 663
BstV1I GCAGC 2 cut(s) 88, 1463
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 1580
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 6 cut(s) 44, 68, 83, 182, 257, 1169
BtgI CCRYGG 2 cut(s) 1170, 1573
BtgZI GCGATG 3 cut(s) 41, 563, 1527
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 4 cut(s) 360, 465, 1159, 1236
Cac8I GCNNGC 4 cut(s) 81, 184, 667, 813
CaiI CAGNNNCTG 2 cut(s) 258, 467
CciI TCATGA 3 cut(s) 111, 867, 1201
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 255, 1167
Csp6I GTAC 6 cut(s) 57, 565, 805, 1150, 1293, 1332
CviQI GTAC 6 cut(s) 57, 565, 805, 1150, 1293, 1332
DpnI GATC 8 cut(s) 110, 279, 459, 938, 1206, 1402, 1418, 1473
DpnII GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
EaeI YGGCCR 2 cut(s) 42, 66
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 1518
EarI CTCTTC 1 cut(s) 1518
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 5 cut(s) 69, 136, 334, 379, 1170
Eco24I GRGCYC 1 cut(s) 831
Eco31I GGTCTC 2 cut(s) 635, 827
Eco32I GATATC 3 cut(s) 36, 699, 985
Eco47III AGCGCT 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 743, 1451
Eco88I CYCGRG 2 cut(s) 176, 824
EcoNI CCTNNNNNAGG 1 cut(s) 565
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 1436
EcoRII CCWGG 2 cut(s) 257, 579
EcoRV GATATC 3 cut(s) 36, 699, 985
EcoT14I CCWWGG 5 cut(s) 69, 136, 334, 379, 1170
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 5 cut(s) 69, 136, 334, 379, 1170
FaqI GGGAC 1 cut(s) 562
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 77, 84, 154, 1452
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 4 cut(s) 77, 84, 154, 1452
FspBI CTAG 5 cut(s) 137, 246, 371, 947, 1545
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 77, 84, 154, 1452
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 89, 624
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 6 cut(s) 44, 68, 83, 182, 257, 1169
HapII CCGG 3 cut(s) 41, 65, 87
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 1093
HindII GTYRAC 1 cut(s) 1093
HindIII AAGCTT 2 cut(s) 1305, 1345
HinfI GANTC 4 cut(s) 47, 530, 589, 1020
HpaII CCGG 3 cut(s) 41, 65, 87
HphI GGTGA 6 cut(s) 30, 276, 391, 1334, 1352, 1477
Hpy166II GTNNAC 5 cut(s) 218, 376, 855, 1093, 1157
Hpy188I TCNGA 8 cut(s) 235, 390, 674, 762, 898, 1227, 1263, 1506
Hpy8I GTNNAC 5 cut(s) 218, 376, 855, 1093, 1157
HpyAV CCTTC 6 cut(s) 812, 1116, 1208, 1386, 1391, 1426
HpyCH4III ACNGT 4 cut(s) 469, 1154, 1267, 1577
HpyCH4IV ACGT 2 cut(s) 881, 1368
HpyCH4V TGCA 8 cut(s) 31, 596, 665, 815, 1082, 1192, 1241, 1451
HpyF10VI GCNNNNNNNGC 1 cut(s) 1247
HpySE526I ACGT 2 cut(s) 881, 1368
HspAI GCGC 1 cut(s) 186
KpnI GGTACC 1 cut(s) 60
Kzo9I GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
LmnI GCTCC 3 cut(s) 73, 311, 1378
Lsp1109I GCAGC 2 cut(s) 88, 1463
LweI GCATC 6 cut(s) 18, 105, 258, 535, 605, 678
MaeI CTAG 5 cut(s) 137, 246, 371, 947, 1545
MaeII ACGT 2 cut(s) 881, 1368
MaeIII GTNAC 5 cut(s) 319, 358, 463, 1008, 1355
MalI GATC 8 cut(s) 110, 279, 459, 938, 1206, 1402, 1418, 1473
MboI GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
MboII GAAGA 6 cut(s) 92, 289, 607, 749, 1199, 1535
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 442, 831
MluCI AATT 8 cut(s) 161, 207, 265, 555, 889, 1035, 1275, 1436
MlyI GAGTC 1 cut(s) 598
MmeI TCCRAC 2 cut(s) 723, 997
MnlI CCTC 8 cut(s) 134, 172, 268, 407, 1157, 1193, 1274, 1387
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 1436
MseI TTAA 4 cut(s) 206, 1065, 1274, 1585
MslI CAYNNNNRTG 4 cut(s) 500, 860, 1446, 1578
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 3 cut(s) 41, 65, 87
MspR9I CCNGG 2 cut(s) 259, 581
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 2 cut(s) 259, 581
MwoI GCNNNNNNNGC 1 cut(s) 1247
NcoI CCATGG 1 cut(s) 1170
NdeII GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
NlaIV GGNNCC 5 cut(s) 58, 313, 340, 1168, 1374
NmuCI GTSAC 4 cut(s) 319, 358, 463, 1008
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 2 cut(s) 811, 1016
OliI CACNNNNGTG 1 cut(s) 1446
PagI TCATGA 3 cut(s) 111, 867, 1201
PciI ACATGT 1 cut(s) 1012
PctI GAATGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 1436
PfeI GAWTC 3 cut(s) 47, 530, 1020
PflFI GACNNNGTC 2 cut(s) 574, 1221
PflMI CCANNNNNTGG 2 cut(s) 22, 1565
PkrI GCNGC 4 cut(s) 78, 85, 155, 1453
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
Ppu21I YACGTR 2 cut(s) 882, 1369
PscI ACATGT 1 cut(s) 1012
PshAI GACNNNNGTC 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 1274
Psp6I CCWGG 2 cut(s) 257, 579
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 257, 579
PspN4I GGNNCC 5 cut(s) 58, 313, 340, 1168, 1374
PspPI GGNCC 2 cut(s) 255, 1167
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 2 cut(s) 258, 467
PsuI RGATCY 1 cut(s) 277
PsyI GACNNNGTC 2 cut(s) 574, 1221
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 6 cut(s) 58, 566, 806, 1151, 1294, 1333
RsaNI GTAC 6 cut(s) 57, 565, 805, 1150, 1293, 1332
RseI CAYNNNNRTG 4 cut(s) 500, 860, 1446, 1578
SaqAI TTAA 4 cut(s) 206, 1065, 1274, 1585
SatI GCNGC 4 cut(s) 77, 84, 154, 1452
Sau3AI GATC 8 cut(s) 108, 277, 457, 936, 1204, 1400, 1416, 1471
Sau96I GGNCC 2 cut(s) 255, 1167
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 2 cut(s) 259, 581
SduI GDGCHC 2 cut(s) 442, 831
SfaNI GCATC 6 cut(s) 18, 105, 258, 535, 605, 678
SfcI CTRYAG 2 cut(s) 403, 663
SmiMI CAYNNNNRTG 4 cut(s) 500, 860, 1446, 1578
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 8 cut(s) 161, 207, 265, 555, 889, 1035, 1275, 1436
SsiI CCGC 3 cut(s) 84, 154, 384
SspI AATATT 1 cut(s) 849
SspMI CTAG 5 cut(s) 137, 246, 371, 947, 1545
StyD4I CCNGG 2 cut(s) 257, 579
StyI CCWWGG 5 cut(s) 69, 136, 334, 379, 1170
TaaI ACNGT 4 cut(s) 469, 1154, 1267, 1577
TaiI ACGT 2 cut(s) 884, 1371
TaqI TCGA 3 cut(s) 1102, 1162, 1474
TaqII GACCGA 1 cut(s) 470
TasI AATT 8 cut(s) 161, 207, 265, 555, 889, 1035, 1275, 1436
TatI WGTACW 2 cut(s) 564, 1331
TauI GCSGC 2 cut(s) 86, 156
TfiI GAWTC 3 cut(s) 47, 530, 1020
Tru1I TTAA 4 cut(s) 206, 1065, 1274, 1585
Tru9I TTAA 4 cut(s) 206, 1065, 1274, 1585
TscAI CASTG 4 cut(s) 367, 472, 1159, 1243
TseFI GTSAC 4 cut(s) 319, 358, 463, 1008
TseI GCWGC 2 cut(s) 76, 1451
Tsp45I GTSAC 4 cut(s) 319, 358, 463, 1008
TspDTI ATGAA 9 cut(s) 518, 607, 700, 884, 1012, 1190, 1439, 1446, 1530
TspRI CASTG 4 cut(s) 367, 472, 1159, 1243
Tth111I GACNNNGTC 2 cut(s) 574, 1221
Van91I CCANNNNNTGG 2 cut(s) 22, 1565
VspI ATTAAT 1 cut(s) 1274
XagI CCTNNNNNAGG 1 cut(s) 565
XapI RAATTY 3 cut(s) 161, 889, 1436
XceI RCATGY 2 cut(s) 811, 1016
XmaJI CCTAGG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 1436
XspI CTAG 5 cut(s) 137, 246, 371, 947, 1545
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.