Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009142

Physical Location & Seq

Genomic Coordinates Reverse (-)

41743427 .. 41747934

Gene Structure 4508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1342600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTTAATTACTGCTACATTTTGTTTTCTCAGCTACTAACATACTTTGTGTGTTGCTTTACAGGGTTGGATATTGACAATCTTCAAAACTTGGAGTGCTGTCTGTTTGTCCTCTTTCCATATTTCTCTTACATGCTTGCAGAAGGTCTTGGTCTGTCTGGTATTGTGTCAATATTGTTCACAGGAATGGTCATGAAGCATTATACGTATTCAAATTTATCAGAAAACTCTCAAAGATTTGTTTCTTCCTTTTTCCATTTGATATCATCACTAGCGGAGACGTTTGTGTTTATATACATGGGCTTTGATATTGCCATGGAACAACATAGCTGGTCACATGTGGGGTTCATTTTTTTCTCAATTATATTTATTGTAGTTGCAAGGGCAGCTAATGTTTTTTCTTGTGCATATTTGGTCAATTTGGTTCGACCTGCACACAGACAGATACCTTTAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCCATGGCTTTTGCCCTGGCTCTGCAATCAGTTCATGATCTCCCAGACGGACATGGCCAGACTATATTCACTGCAACCACTGCCATAGTGGTTCTGACGGTGTTATTAATTGGAGGTTCAACCGGCACCATGCTGGAAGCTTTACAAGTTGTAGGTGATGGCATTGAGGGAACTTTGGGTGAAAATTTTGAAGGGAACAATGGCTATATTGCACCATCTTTTGATGACGAAGGATCATCAGGAAACAGGATCAAGATGAAACTGAAGGAATTCCATCAGAGCACAGCGTCATTCACAGCGTTAGATCGAAACTACCTCACGCCATTCTTTACAAGCCAGAATGGTGATGAAGAGGATGAGCTTGATGAGCCAATGCCTAGCTCTACAAGAAGGGGTTTCCATGGCCTTGGCCAACAGTCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

306

Amino Acids

34.02

Weight (kDa)

5.27

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	21 - 210	5.7e-27	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54370 AT1G79610
fragaria_vesca	FvH4_3g00030 FvH4_3g00030 FvH4_3g00030
malus_domestica	MD00G1208600.v1.1 MD10G1342600.v1.1
prunus_persica	Prupe.4G000200_v2.0.a1 Prupe.4G000200_v2.0.a1
pyrus_communis	pycom10g29190
rosa_chinensis	RchiOBHm_Chr5g0000031 RchiOBHm_Chr5g0000041
rosa_laevigata	RLG00000030836
rosa_multiflora	Rmu_ssc0000243.1_g000029
rosa_roxburghii	Rroxscaffold_1G00076030 Rroxscaffold_2G00107680
rosa_rugosa	Rorug04G0380800
rosa_samantha	Rh5AG000400 Rh5BG001600 Rh5CG000400 Rh5DG000400
rosa_wichuraiana	Rw5G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccB1I	GGYRCC	1 cut(s)	617
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	733, 749
AcoI	YGGCCR	2 cut(s)	547, 901
AcsI	RAATTY	3 cut(s)	214, 676, 761
AcuI	CTGAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	86, 213, 612, 683
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	6 cut(s)	34, 330, 389, 632, 853, 873
AluI	AGCT	6 cut(s)	34, 330, 389, 632, 853, 873
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	2 cut(s)	733, 749
AoxI	GGCC	4 cut(s)	492, 547, 895, 901
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	3 cut(s)	214, 676, 761
AseI	ATTAAT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	659, 683, 848
BalI	TGGCCA	2 cut(s)	549, 903
BanI	GGYRCC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	3 cut(s)	644, 715, 774
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	272, 870
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	2 cut(s)	493, 619
BmrFI	CCNGG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	315, 495, 507, 892, 898
Bse118I	RCCGGY	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	5 cut(s)	315, 495, 507, 892, 898
BseGI	GGATG	1 cut(s)	853
BseMII	CTCAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	4 cut(s)	494, 549, 897, 903
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	615
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	494, 549, 897, 903
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	4 cut(s)	529, 725, 741, 796
Bsp19I	CCATGG	3 cut(s)	315, 495, 892
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	4 cut(s)	494, 549, 897, 903
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	2 cut(s)	192, 526
BspLI	GGNNCC	2 cut(s)	493, 619
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	733, 749
BspT107I	GGYRCC	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	5 cut(s)	315, 495, 507, 892, 898
BssMI	GATC	4 cut(s)	529, 725, 741, 796
BssT1I	CCWWGG	4 cut(s)	315, 495, 892, 898
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	592, 909
Bst6I	CTCTTC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	3 cut(s)	315, 495, 892
BstF5I	GGATG	1 cut(s)	853
BstKTI	GATC	4 cut(s)	532, 728, 744, 799
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	529, 725, 741, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 572, 859
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	2 cut(s)	136, 341
BstSCI	CCNGG	1 cut(s)	507
BstSNI	TACGTA	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	899
BsuRI	GGCC	4 cut(s)	494, 549, 897, 903
BtgI	CCRYGG	3 cut(s)	315, 495, 892
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	2 cut(s)	561, 570
BtsIMutI	CAGTG	2 cut(s)	561, 570
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	2 cut(s)	192, 526
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	768
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	4 cut(s)	531, 727, 743, 798
DpnII	GATC	4 cut(s)	529, 725, 741, 796
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	2 cut(s)	547, 901
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco105I	TACGTA	1 cut(s)	207
Eco130I	CCWWGG	4 cut(s)	315, 495, 892, 898
Eco32I	GATATC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	776
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	4 cut(s)	315, 495, 892, 898
ErhI	CCWWGG	4 cut(s)	315, 495, 892, 898
Esp3I	CGTCTC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	2 cut(s)	272, 870
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	494, 549, 897, 903
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	1 cut(s)	768
HindIII	AAGCTT	1 cut(s)	630
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	3 cut(s)	659, 683, 848
Hpy166II	GTNNAC	2 cut(s)	180, 482
Hpy188I	TCNGA	3 cut(s)	223, 588, 771
Hpy188III	TCNNGA	5 cut(s)	193, 527, 732, 745, 912
Hpy8I	GTNNAC	2 cut(s)	180, 482
HpyAV	CCTTC	5 cut(s)	137, 677, 716, 751, 876
HpyCH4III	ACNGT	2 cut(s)	592, 909
HpyCH4IV	ACGT	2 cut(s)	206, 281
HpyCH4V	TGCA	7 cut(s)	140, 380, 407, 434, 517, 566, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 572, 859
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	206, 281
Kzo9I	GATC	4 cut(s)	529, 725, 741, 796
Lsp1109I	GCAGC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	272, 870
MaeII	ACGT	2 cut(s)	206, 281
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	4 cut(s)	531, 727, 743, 798
MboI	GATC	4 cut(s)	529, 725, 741, 796
MboII	GAAGA	3 cut(s)	74, 237, 854
MhlI	GDGCHC	1 cut(s)	776
MlsI	TGGCCA	2 cut(s)	549, 903
MluCI	AATT	7 cut(s)	7, 214, 360, 418, 600, 676, 761
MluNI	TGGCCA	2 cut(s)	549, 903
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	6 cut(s)	122, 482, 599, 652, 818, 838
Mox20I	TGGCCA	2 cut(s)	549, 903
MroXI	GAANNNNTTC	1 cut(s)	761
MscI	TGGCCA	2 cut(s)	549, 903
MseI	TTAA	3 cut(s)	6, 452, 599
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	2 cut(s)	549, 903
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	3 cut(s)	386, 572, 859
NcoI	CCATGG	3 cut(s)	315, 495, 892
NdeII	GATC	4 cut(s)	529, 725, 741, 796
NlaIV	GGNNCC	2 cut(s)	493, 619
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	2 cut(s)	136, 341
PagI	TCATGA	2 cut(s)	192, 526
PciI	ACATGT	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	207
PscI	ACATGT	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	493, 619
PspPI	GGNCC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	6, 452, 599
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	529, 725, 741, 796
Sau96I	GGNCC	1 cut(s)	492
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	207
Sse9I	AATT	7 cut(s)	7, 214, 360, 418, 600, 676, 761
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	2 cut(s)	272, 870
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	4 cut(s)	315, 495, 892, 898
TaaI	ACNGT	2 cut(s)	592, 909
TaiI	ACGT	2 cut(s)	209, 284
TaqI	TCGA	4 cut(s)	427, 487, 799, 913
TasI	AATT	7 cut(s)	7, 214, 360, 418, 600, 676, 761
Tru1I	TTAA	3 cut(s)	6, 452, 599
Tru9I	TTAA	3 cut(s)	6, 452, 599
TscAI	CASTG	2 cut(s)	568, 577
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	5 cut(s)	209, 337, 515, 764, 855
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	2 cut(s)	568, 577
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	3 cut(s)	214, 676, 761
XceI	RCATGY	2 cut(s)	136, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	2 cut(s)	272, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.