Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009142

Physical Location & Seq

Genomic Coordinates Forward (+)

31682396 .. 31684185

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCTGCACAAGCTTAACACGCTGCAGAGGCCTTTGCCGGCGATCTTTTCTGTTGTCACTGGTGTTCTAGTTTACCTTGGCGGTCTGATATACCTCACCTACAGACTTCCATTTATGGAGTGCTTGATGTTTGGTGCTCTTATATCAGCGACCGATCCAGTCACTGTCTTGTCCATCTTTCAGGAACTTGGCACAGATATGAACTTGTATGCTCTGGTGTTTGGGGGAATCTGTATGCTCTGGTGTTTGGGGGAATCTGTTTTGAATGATGTGATGGCAATTTCCTTGTACAGGAAGATGTCCCTGGTCAGGAGTCATGCATCATCTGGAGAAAACTTCTTCATGGTTATCGTCAAGTTTCTTGAGACCTTTGTCGGTTCAATGTCTGTAGGCATTGGAGTTGGCTTTACTTCTGCTTTGCTTTTCAAAAGGTCTTGGGCTCTCTGGTATCGTGTCAATATTGTTCACAGGAATGGTCATGAAACATTACACGTATTCAAATTGTCAGAGAACTCTCAACGATTTGTTTCAGCCTTTTTCCATTTGGTCTCATCACTAGCAGAGGCATTGATACCAGTAAAACATCAAAAAGCACTTTGGTACAGTGGACTTCGAGGGGCCATGGCTTTTGCCCTCGCTCTGCAATCAGTTCATGATCTTCCAGAAAGACATGGTCAGACTATATTCACTGCAACTACTGCAATAGTTAGTGAGAAAGTAGGGTTCGAGGACGGAGATGTCCGAAGTTCGACGATTAAGGATAACCGTAGTGATTGTGTTCGAGGACGGGGATGTCCGAAGTTCGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

270

Amino Acids

30.04

Weight (kDa)

8.59

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	16 - 144	2.7e-13	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54370 AT1G79610
fragaria_vesca	FvH4_3g00030 FvH4_3g00030 FvH4_3g00030
malus_domestica	MD00G1208600.v1.1 MD10G1342600.v1.1
prunus_persica	Prupe.4G000200_v2.0.a1 Prupe.4G000200_v2.0.a1
pyrus_communis	pycom10g29190
rosa_chinensis	RchiOBHm_Chr5g0000031 RchiOBHm_Chr5g0000041
rosa_laevigata	RLG00000030836
rosa_multiflora	Rmu_ssc0000243.1_g000029
rosa_roxburghii	Rroxscaffold_1G00076030 Rroxscaffold_2G00107680
rosa_rugosa	Rorug04G0380800
rosa_samantha	Rh5AG000400 Rh5BG001600 Rh5CG000400 Rh5DG000400
rosa_wichuraiana	Rw5G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	737, 792
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	290, 602
AfiI	CCNNNNNNNGG	2 cut(s)	291, 309
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	265, 381, 427, 499
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	359, 553
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	29, 618
ApeKI	GCWGC	2 cut(s)	4, 22
AspS9I	GGNCC	1 cut(s)	618
AsuHPI	GGTGA	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	182, 268
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	359, 553
BfaI	CTAG	2 cut(s)	68, 557
BfmI	CTRYAG	3 cut(s)	23, 100, 387
BisI	GCNGC	2 cut(s)	5, 23
BlsI	GCNGC	2 cut(s)	6, 24
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	329
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	493
BsaI	GGTCTC	2 cut(s)	359, 553
BsaJI	CCNNGG	3 cut(s)	76, 303, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 309
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	64, 158, 575
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	76, 303, 621
BseGI	GGATG	1 cut(s)	797
BseLI	CCNNNNNNNGG	2 cut(s)	291, 309
BseNI	ACTGG	3 cut(s)	64, 158, 575
BseXI	GCAGC	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	31, 620
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	291, 309
BsmAI	GTCTC	2 cut(s)	359, 553
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	31, 620
Bso31I	GGTCTC	2 cut(s)	359, 553
Bsp1286I	GDGCHC	2 cut(s)	139, 442
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	42, 154, 655
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	31, 620
BspHI	TCATGA	2 cut(s)	478, 652
BspLI	GGNNCC	1 cut(s)	619
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	359, 553
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	64, 158, 575
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	76, 303, 621
BssMI	GATC	3 cut(s)	42, 154, 655
BssT1I	CCWWGG	2 cut(s)	76, 621
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	166, 605, 767
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstAUI	TGTACA	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	621
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	797
BstKTI	GATC	3 cut(s)	45, 157, 658
BstMAI	GTCTC	2 cut(s)	359, 553
BstMBI	GATC	3 cut(s)	42, 154, 655
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 28, 698
BstNI	CCWGG	1 cut(s)	305
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	3 cut(s)	23, 100, 387
BstV1I	GCAGC	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	31, 620
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	797
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	4 cut(s)	57, 162, 610, 687
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	2 cut(s)	478, 652
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	618
Csp6I	GTAC	2 cut(s)	289, 601
CviAII	CATG	6 cut(s)	317, 343, 479, 622, 653, 671
CviJI	RGCY	7 cut(s)	13, 31, 405, 440, 533, 620, 626
CviKI_1	RGCY	7 cut(s)	13, 31, 405, 440, 533, 620, 626
CviQI	GTAC	2 cut(s)	289, 601
DpnI	GATC	3 cut(s)	44, 156, 657
DpnII	GATC	3 cut(s)	42, 154, 655
DrdI	GACNNNNNNGTC	2 cut(s)	737, 792
DseDI	GACNNNNNNGTC	2 cut(s)	737, 792
Eco130I	CCWWGG	2 cut(s)	76, 621
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	442
Eco31I	GGTCTC	2 cut(s)	359, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	76, 621
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	2 cut(s)	76, 621
FaeI	CATG	6 cut(s)	320, 346, 482, 625, 656, 674
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	6 cut(s)	316, 342, 478, 621, 652, 670
Fnu4HI	GCNGC	2 cut(s)	5, 23
FokI	GGATG	1 cut(s)	804
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	5, 23
FspBI	CTAG	2 cut(s)	68, 557
GluI	GCNGC	2 cut(s)	5, 23
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	31, 620
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	6 cut(s)	320, 346, 482, 625, 656, 674
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	228, 254, 313
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	73, 466, 608
Hpy188I	TCNGA	5 cut(s)	87, 508, 678, 743, 798
Hpy188III	TCNNGA	7 cut(s)	182, 310, 327, 362, 479, 653, 662
Hpy8I	GTNNAC	3 cut(s)	73, 466, 608
Hpy99I	CGWCG	2 cut(s)	754, 809
HpyCH4III	ACNGT	3 cut(s)	166, 605, 767
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	7, 25, 320, 643, 692, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 28, 698
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	320, 346, 482, 625, 656, 674
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	42, 154, 655
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	68, 557
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	55, 160
MalI	GATC	3 cut(s)	44, 156, 657
MboI	GATC	3 cut(s)	42, 154, 655
MboII	GAAGA	3 cut(s)	307, 331, 650
MhlI	GDGCHC	2 cut(s)	139, 442
MluCI	AATT	2 cut(s)	279, 500
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	7 cut(s)	21, 104, 556, 608, 644, 721, 776
Mph1103I	ATGCAT	1 cut(s)	322
MroNI	GCCGGC	1 cut(s)	37
MseI	TTAA	3 cut(s)	15, 756, 811
MslI	CAYNNNNRTG	2 cut(s)	197, 471
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 28, 698
NaeI	GCCGGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	3 cut(s)	42, 154, 655
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	320, 346, 482, 625, 656, 674
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	55, 160
NsiI	ATGCAT	1 cut(s)	322
PagI	TCATGA	2 cut(s)	478, 652
PceI	AGGCCT	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	228, 254
PflFI	GACNNNGTC	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	6, 24
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	618
PstI	CTGCAG	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	672
RsaI	GTAC	2 cut(s)	290, 602
RsaNI	GTAC	2 cut(s)	289, 601
RseI	CAYNNNNRTG	2 cut(s)	197, 471
SaqAI	TTAA	3 cut(s)	15, 756, 811
SatI	GCNGC	2 cut(s)	5, 23
Sau3AI	GATC	3 cut(s)	42, 154, 655
Sau96I	GGNCC	1 cut(s)	618
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	139, 442
SetI	ASST	7 cut(s)	15, 78, 96, 101, 371, 434, 495
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	3 cut(s)	23, 100, 387
SmiMI	CAYNNNNRTG	2 cut(s)	197, 471
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	279, 500
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	81
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	2 cut(s)	68, 557
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	76, 621
TaaI	ACNGT	3 cut(s)	166, 605, 767
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	5 cut(s)	613, 726, 749, 781, 804
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	279, 500
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	228, 254
Tru1I	TTAA	3 cut(s)	15, 756, 811
Tru9I	TTAA	3 cut(s)	15, 756, 811
TscAI	CASTG	4 cut(s)	64, 169, 610, 694
TseFI	GTSAC	2 cut(s)	55, 160
TseI	GCWGC	2 cut(s)	4, 22
Tsp45I	GTSAC	2 cut(s)	55, 160
TspDTI	ATGAA	4 cut(s)	215, 331, 495, 641
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	4 cut(s)	64, 169, 610, 694
Tth111I	GACNNNGTC	1 cut(s)	672
XagI	CCTNNNNNAGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	68, 557
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.