Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009142

Physical Location & Seq

Genomic Coordinates Reverse (-)

55138497 .. 55140469

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0380800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCCATCTCAAGATCTGTGTGTGTGTTCCTTCTCATAGGACTCATCAAGATCTTTCAGAAACTATGGTGGAACTCGCTTACAGAGTCTGCTGGCTTCTCAGGGAATCAAAGGCCCTCCTTACAGAGTTACAGACTAATCCATGGAAACAACAAGGAAATCTCCTACTTCCGAAAGGAAGCCATGAGCAGACCCAAAGGTTTATCACATGATGTGTTTTGTGCAATTTTACCTCATATGCACTCATGGACCAAGATATATGGGAAGAATTTTCTTCAATGGGATGGTCTTGAACCTGTGTTGGTCATTACGGAGCCTGAGTTGTGCAAAGAGATACTGAACAACAAAGATAATGCTTTTCCAAAAACCAAGCCCCATGGCTATATCAAGAAGCTATTAGGAGATGGCCTTGTGACAACACCAGATGGTGAAAAATGGGCCAAACTGCGAAAACTGGCCAACCATACCTTCCATGGAAAGAGCTTAAAAAGTATGATTCCAGCAATGTTAGCTAGTACGGGGACAATGCTAAAAGGGTGGAAAAATCATGAAGGGAAAGAGATTGAAGTGTTTGAAGAGTTTAGATTGTTAACTTCGGATGTCATTTCTAGGACGGCATTTGGCAGCAGCTACTTAGAAGGGAAAAACATTTTTGACTTGTTATTTAAGATATCCTCCTTATCAATGAAATTTGCTTCCCTTAAACCCATATTTCCGGGTTTCAGTAAATTTCTTAGATTTAGTGGTGAGAGTGAATTAGAGAAGCTTGAGAAAGCAATACACGACTCCATCATGAAGATTATTAAAGCAAGAGAAAGAAAAGCCGTGAATGGAGAAGAAGATGGATTTGGGAGGGACTTTCTTGGATTAGTTTTAGAGGTTCATCATGATACGAACGACAATCAGAGGATTTCAGTGGACAATGTGGTTGATGAGTGCAAGACATTTTACTTAGCCGGACACGAAAGCACTGCTACTCTCCTCGCTTGGACTGTCTTTCTTTTAGCACACCATACGGATTGGCAAGAGGAAGCAAGGAAGGAAGTCCTGCAATTATTTGGTAAACAAACACCAAATCCTGACGGCATTGCCAAACTAAAAACAATGAGTATGATCTTGAATGAGTCTCTGAGGTTATATGCTCCTGTTCTTGGTATTGTTAAAAGGAAGGTTGAAAAGGAAGTTAGATTGGGGAATTTCAGCCTTCCTGCTAATCTGGAATTGGCCATCTTCTTTCTGGCAGTTCATTATGATCCTCAAATCTGGGGACAAGATGCTCAACTTTTCAAACCAGAGCGGTTCTCAGAAGGGGTTGCTAAAGCTACCAAGGATAACCTAGGCGCATTCTTACCCTTTGGATTGGGCCCTCGAATTTGTGTGGGGTTTAACTTTGCAACCACTGAAGCAAAGATTGCTTTGTCAATGATTCTACAACGCTACTCCTTTACTCTTTCCCCGGCTTATGTTCACTCACCCTCTCAGTATCTTACAATTCGTCCACAACATGGAGTTCAAGTGATCCTACATCCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

511

Amino Acids

57.83

Weight (kDa)

9.17

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	80 - 487	1.2e-75	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54370 AT1G79610
fragaria_vesca	FvH4_3g00030 FvH4_3g00030 FvH4_3g00030
malus_domestica	MD00G1208600.v1.1 MD10G1342600.v1.1
prunus_persica	Prupe.4G000200_v2.0.a1 Prupe.4G000200_v2.0.a1
pyrus_communis	pycom10g29190
rosa_chinensis	RchiOBHm_Chr5g0000031 RchiOBHm_Chr5g0000041
rosa_laevigata	RLG00000030836
rosa_multiflora	Rmu_ssc0000243.1_g000029
rosa_roxburghii	Rroxscaffold_1G00076030 Rroxscaffold_2G00107680
rosa_rugosa	Rorug04G0380800
rosa_samantha	Rh5AG000400 Rh5BG001600 Rh5CG000400 Rh5DG000400
rosa_wichuraiana	Rw5G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1505
AccBSI	CCGCTC	1 cut(s)	1297
AciI	CCGC	1 cut(s)	1297
AclWI	GGATC	2 cut(s)	1247, 1513
AcoI	YGGCCR	3 cut(s)	3, 456, 1224
AcsI	RAATTY	5 cut(s)	268, 689, 728, 1195, 1371
AcuI	CTGAAG	1 cut(s)	1422
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	1151, 1505
AgsI	TTSAA	8 cut(s)	278, 293, 566, 575, 1120, 1175, 1288, 1514
AjuI	GAANNNNNNNTTGG	4 cut(s)	452, 484, 831, 863
AluBI	AGCT	6 cut(s)	394, 483, 512, 630, 766, 1322
AluI	AGCT	6 cut(s)	394, 483, 512, 630, 766, 1322
Alw26I	GTCTC	1 cut(s)	1131
AlwI	GGATC	2 cut(s)	1247, 1513
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	7 cut(s)	3, 113, 406, 438, 456, 1224, 1363
ApaI	GGGCCC	1 cut(s)	1367
ApeKI	GCWGC	2 cut(s)	624, 627
ApoI	RAATTY	5 cut(s)	268, 689, 728, 1195, 1371
AspA2I	CCTAGG	1 cut(s)	1336
AspLEI	GCGC	1 cut(s)	1343
AspS9I	GGNCC	5 cut(s)	114, 249, 438, 1363, 1364
AsuC2I	CCSGG	2 cut(s)	717, 1457
AsuHPI	GGTGA	3 cut(s)	440, 758, 1464
AvaII	GGWCC	1 cut(s)	249
AvrII	CCTAGG	1 cut(s)	1336
BaeGI	GKGCMC	1 cut(s)	1367
BalI	TGGCCA	3 cut(s)	5, 458, 1226
BanII	GRGCYC	1 cut(s)	1367
BbvI	GCAGC	2 cut(s)	636, 639
BccI	CCATC	7 cut(s)	14, 278, 398, 419, 797, 836, 1235
BceAI	ACGGC	3 cut(s)	630, 809, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BcnI	CCSGG	2 cut(s)	717, 1457
BcoDI	GTCTC	1 cut(s)	1131
BfaI	CTAG	3 cut(s)	513, 609, 1337
BglII	AGATCT	2 cut(s)	14, 51
BisI	GCNGC	2 cut(s)	625, 628
BlnI	CCTAGG	1 cut(s)	1336
BlsI	GCNGC	2 cut(s)	626, 629
Bme1390I	CCNGG	2 cut(s)	717, 1457
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	5 cut(s)	114, 249, 438, 1363, 1364
BmiI	GGNNCC	2 cut(s)	315, 1365
BmrFI	CCNGG	2 cut(s)	717, 1457
BmsI	GCATC	1 cut(s)	1264
BplI	GAGNNNNNCTC	2 cut(s)	1286, 1318
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	2 cut(s)	717, 1457
BsaJI	CCNNGG	6 cut(s)	142, 376, 472, 1326, 1336, 1455
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 1500, 1530
Bsc4I	CCNNNNNNNGG	2 cut(s)	1151, 1505
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	2 cut(s)	510, 1086
BseDI	CCNNGG	6 cut(s)	142, 376, 472, 1326, 1336, 1455
BseGI	GGATG	3 cut(s)	289, 604, 1525
BseLI	CCNNNNNNNGG	2 cut(s)	1151, 1505
BseMI	GCAATG	2 cut(s)	510, 1086
BseMII	CTCAG	5 cut(s)	114, 309, 1121, 1317, 1493
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	1367
BseXI	GCAGC	2 cut(s)	636, 639
BshFI	GGCC	7 cut(s)	5, 115, 408, 440, 458, 1226, 1365
BsiSI	CCGG	3 cut(s)	716, 957, 1457
BslFI	GGGAC	3 cut(s)	535, 869, 1281
BslI	CCNNNNNNNGG	2 cut(s)	1151, 1505
BsmAI	GTCTC	1 cut(s)	1131
BsmFI	GGGAC	3 cut(s)	535, 869, 1281
BsmI	GAATGC	1 cut(s)	1343
BsnI	GGCC	7 cut(s)	5, 115, 408, 440, 458, 1226, 1365
Bsp120I	GGGCCC	1 cut(s)	1363
Bsp1286I	GDGCHC	1 cut(s)	1367
Bsp143I	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
Bsp19I	CCATGG	3 cut(s)	142, 376, 472
BspACI	CCGC	1 cut(s)	1297
BspANI	GGCC	7 cut(s)	5, 115, 408, 440, 458, 1226, 1365
BspCNI	CTCAG	5 cut(s)	113, 310, 1122, 1316, 1492
BspHI	TCATGA	3 cut(s)	547, 792, 886
BspLI	GGNNCC	2 cut(s)	315, 1365
BspPI	GGATC	2 cut(s)	1247, 1513
BsrBI	CCGCTC	1 cut(s)	1297
BsrDI	GCAATG	2 cut(s)	510, 1086
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	6 cut(s)	142, 376, 472, 1326, 1336, 1455
BssMI	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
BssT1I	CCWWGG	5 cut(s)	142, 376, 472, 1326, 1336
Bst4CI	ACNGT	2 cut(s)	994, 1533
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	1412
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	8 cut(s)	100, 318, 634, 734, 952, 1130, 1303, 1479
BstDSI	CCRYGG	3 cut(s)	142, 376, 472
BstF5I	GGATG	3 cut(s)	289, 604, 1525
BstHHI	GCGC	1 cut(s)	1343
BstKTI	GATC	5 cut(s)	17, 54, 1116, 1255, 1521
BstMAI	GTCTC	1 cut(s)	1131
BstMBI	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 1412
BstSCI	CCNGG	2 cut(s)	715, 1455
BstSLI	GKGCMC	1 cut(s)	1367
BstV1I	GCAGC	2 cut(s)	636, 639
BstX2I	RGATCY	2 cut(s)	14, 51
BstYI	RGATCY	2 cut(s)	14, 51
BsuRI	GGCC	7 cut(s)	5, 115, 408, 440, 458, 1226, 1365
BtgI	CCRYGG	3 cut(s)	142, 376, 472
BtsCI	GGATG	3 cut(s)	289, 604, 1525
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	4 cut(s)	921, 969, 1398, 1529
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	89
CciI	TCATGA	3 cut(s)	547, 792, 886
CfoI	GCGC	1 cut(s)	1343
Cfr13I	GGNCC	5 cut(s)	114, 249, 438, 1363, 1364
Csp6I	GTAC	1 cut(s)	516
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	8 cut(s)	100, 318, 634, 734, 952, 1130, 1303, 1479
DpnI	GATC	5 cut(s)	16, 53, 1115, 1254, 1520
DpnII	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
EaeI	YGGCCR	3 cut(s)	3, 456, 1224
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	5 cut(s)	142, 376, 472, 1326, 1336
Eco24I	GRGCYC	1 cut(s)	1367
Eco32I	GATATC	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	1422
EcoO109I	RGGNCCY	2 cut(s)	114, 1364
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	5 cut(s)	142, 376, 472, 1326, 1336
EcoT38I	GRGCYC	1 cut(s)	1367
ErhI	CCWWGG	5 cut(s)	142, 376, 472, 1326, 1336
FaqI	GGGAC	3 cut(s)	535, 869, 1281
FauNDI	CATATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	625, 628
FokI	GGATG	3 cut(s)	296, 611, 1512
FriOI	GRGCYC	1 cut(s)	1367
Fsp4HI	GCNGC	2 cut(s)	625, 628
FspBI	CTAG	3 cut(s)	513, 609, 1337
GlaI	GCGC	1 cut(s)	1342
GluI	GCNGC	2 cut(s)	625, 628
HaeIII	GGCC	7 cut(s)	5, 115, 408, 440, 458, 1226, 1365
HapII	CCGG	3 cut(s)	716, 957, 1457
HhaI	GCGC	1 cut(s)	1343
Hin6I	GCGC	1 cut(s)	1341
HinP1I	GCGC	1 cut(s)	1341
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	7 cut(s)	42, 86, 106, 496, 785, 1124, 1426
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	3 cut(s)	716, 957, 1457
HphI	GGTGA	3 cut(s)	440, 758, 1464
Hpy166II	GTNNAC	5 cut(s)	591, 919, 1064, 1468, 1499
Hpy188I	TCNGA	6 cut(s)	60, 173, 598, 906, 1131, 1306
Hpy8I	GTNNAC	5 cut(s)	591, 919, 1064, 1468, 1499
HpyAV	CCTTC	8 cut(s)	41, 478, 545, 632, 1033, 1162, 1214, 1301
HpyCH4III	ACNGT	2 cut(s)	994, 1533
HpyCH4V	TGCA	6 cut(s)	224, 241, 327, 939, 1051, 1394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 1412
HpyF3I	CTNAG	8 cut(s)	100, 318, 634, 734, 952, 1130, 1303, 1479
HspAI	GCGC	1 cut(s)	1341
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
LmnI	GCTCC	2 cut(s)	313, 1147
Lsp1109I	GCAGC	2 cut(s)	636, 639
LweI	GCATC	1 cut(s)	1264
MaeI	CTAG	3 cut(s)	513, 609, 1337
MaeIII	GTNAC	2 cut(s)	128, 412
MalI	GATC	5 cut(s)	16, 53, 1115, 1254, 1520
MbiI	CCGCTC	1 cut(s)	1297
MboI	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
MboII	GAAGA	7 cut(s)	266, 277, 587, 808, 848, 851, 1222
MflI	RGATCY	2 cut(s)	14, 51
MhlI	GDGCHC	1 cut(s)	1367
MlsI	TGGCCA	3 cut(s)	5, 458, 1226
MluNI	TGGCCA	3 cut(s)	5, 458, 1226
MlyI	GAGTC	4 cut(s)	36, 95, 779, 1133
Mox20I	TGGCCA	3 cut(s)	5, 458, 1226
MscI	TGGCCA	3 cut(s)	5, 458, 1226
MseI	TTAA	7 cut(s)	485, 590, 666, 702, 804, 1161, 1386
Msp20I	TGGCCA	3 cut(s)	5, 458, 1226
MspI	CCGG	3 cut(s)	716, 957, 1457
MspR9I	CCNGG	2 cut(s)	717, 1457
Mva1269I	GAATGC	1 cut(s)	1343
MwoI	GCNNNNNNNGC	2 cut(s)	509, 1412
NciI	CCSGG	2 cut(s)	717, 1457
NcoI	CCATGG	3 cut(s)	142, 376, 472
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
NlaIV	GGNNCC	2 cut(s)	315, 1365
NmuCI	GTSAC	1 cut(s)	412
PagI	TCATGA	3 cut(s)	547, 792, 886
PctI	GAATGC	1 cut(s)	1343
PfeI	GAWTC	3 cut(s)	106, 496, 1426
PflMI	CCANNNNNTGG	1 cut(s)	1505
PkrI	GCNGC	2 cut(s)	626, 629
PleI	GAGTC	4 cut(s)	36, 94, 779, 1132
PpsI	GAGTC	4 cut(s)	36, 94, 779, 1132
PspN4I	GGNNCC	2 cut(s)	315, 1365
PspOMI	GGGCCC	1 cut(s)	1363
PspPI	GGNCC	5 cut(s)	114, 249, 438, 1363, 1364
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	14, 51
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	7 cut(s)	485, 590, 666, 702, 804, 1161, 1386
SatI	GCNGC	2 cut(s)	625, 628
Sau3AI	GATC	5 cut(s)	14, 51, 1113, 1252, 1518
Sau96I	GGNCC	5 cut(s)	114, 249, 438, 1363, 1364
SchI	GAGTC	4 cut(s)	36, 95, 779, 1133
ScrFI	CCNGG	2 cut(s)	717, 1457
SduI	GDGCHC	1 cut(s)	1367
SfaNI	GCATC	1 cut(s)	1264
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	10, 767
SmoI	CTYRAG	2 cut(s)	10, 767
SsiI	CCGC	1 cut(s)	1297
SspMI	CTAG	3 cut(s)	513, 609, 1337
StyD4I	CCNGG	2 cut(s)	715, 1455
StyI	CCWWGG	5 cut(s)	142, 376, 472, 1326, 1336
TaaI	ACNGT	2 cut(s)	994, 1533
TaqI	TCGA	1 cut(s)	1369
TfiI	GAWTC	3 cut(s)	106, 496, 1426
Tru1I	TTAA	7 cut(s)	485, 590, 666, 702, 804, 1161, 1386
Tru9I	TTAA	7 cut(s)	485, 590, 666, 702, 804, 1161, 1386
TscAI	CASTG	4 cut(s)	921, 976, 1405, 1536
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	624, 627
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	5 cut(s)	564, 701, 809, 872, 1235
TspGWI	ACGGA	2 cut(s)	326, 1031
TspRI	CASTG	4 cut(s)	921, 976, 1405, 1536
Van91I	CCANNNNNTGG	1 cut(s)	1505
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	5 cut(s)	268, 689, 728, 1195, 1371
XcmI	CCANNNNNNNNNTGG	2 cut(s)	470, 1234
XmaJI	CCTAGG	1 cut(s)	1336
XspI	CTAG	3 cut(s)	513, 609, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.