AT1G79760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014284
Physical Location & Seq
Forward (+)
30011981 .. 30013495
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79760.1

Sequence Viewer

Length: 900 bp
ATGGGAGTTTCCTCTCCCGACTTCCGAGCCCCTCCTCCGTCCCCGGTAGCATCCAGCCGCCGTGCCTCCTTCACGGCCAACGAAGACGTCCTCTCGGAGTTCCTGGACAAGTGTGGTCGAGTCCCAAATCTTGTATTGCCCGATAAAGTCTTCCCCAAGCACACATTCCTTCTCAACCCTCCCACCTTCGATTTCCACCGGTTGGACTCCCTCTCGGCTCTGCTTGATGCCATCGCCACCATCGGTTGTTTTCAGCTCGTTAACCACGGTGTTCCAGAGGCTATGGTGAAAGCCGCCATGGACAAAACCATTTTCCACGATGAGACGGAGGAGTTCGTGTTTAATAAAGATATTAATGCTGATGATCACACGGCTTGTTATTCAGATTTGAGGGAGTTGATGGGTGAGGCAGAGAGGATAGGGAAGGCGGTGAGAGAAAAGCTAGGAGCAGGAGGAAGAAGCCAAAAGGAAGGGGTAGGGGTTTGCTACGTGAAGAGGCATAATATTAAAAACGAATCAAAGGAAGAAGCCATAAGGATGCTGCTAAGAGGCTATGACGAAAGACATTCTCTATGTCTCAACTTCTGCCATGCAGAGTTCCACGTCTACTCCAAAAGAGGTTGGGTCTCCTTCTCCCCACGTCCCGATGCGGTGATCGTCACAATCGGAGATCAAGGCTGGAGCGGAAGATTCAAGGGCGTTGTGGGGAGGCCCCTTCTTTACAAATCAGATCTTCATCACAATCTGATTTCCATATCCTTTCTCTACACTAGTACTACCACTCTCCACAACACAAGCAGAAAAATTACCAAAAGGACGAAGAAGAAGACCATTTCCCTCTTCCAACAGCTCCTCTTTGCTCTCTTTCTCACACTCCTCTTCCCTTTTTTACTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

33.67

Weight (kDa)

8.96

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79760 AT1G79760
fragaria_vesca FvH4_6g32300 FvH4_6g32300
malus_domestica MD09G1204500.v1.1
prunus_persica Prupe.3G060100_v2.0.a1
pyrus_communis pycom09g12140
rosa_chinensis RchiOBHm_Chr2g0140341
rosa_laevigata RLG00000019860
rosa_multiflora Rmu_sc0005446.1_g000032
rosa_roxburghii Rroxscaffold_2G00104920
rosa_rugosa Rorug02G0361700
rosa_samantha Rh2AG413000 Rh2BG423400 Rh2CG399000 Rh2DG432300
rosa_wichuraiana Rw2G033850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 606
AciI CCGC 5 cut(s) 58, 294, 428, 650, 684
AcoI YGGCCR 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 775
AfiI CCNNNNNNNGG 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 694
AhlI ACTAGT 1 cut(s) 770
AjiI CACGTC 2 cut(s) 604, 641
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 256, 442, 850
AluI AGCT 3 cut(s) 256, 442, 850
Alw26I GTCTC 3 cut(s) 317, 581, 631
AoxI GGCC 2 cut(s) 75, 710
ApeKI GCWGC 1 cut(s) 541
AseI ATTAAT 1 cut(s) 354
AsiGI ACCGGT 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 711
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 4 cut(s) 298, 416, 442, 664
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 3 cut(s) 90, 142, 833
BbvI GCAGC 1 cut(s) 528
BccI CCATC 3 cut(s) 239, 248, 394
BceAI ACGGC 3 cut(s) 45, 90, 387
BciT130I CCWGG 1 cut(s) 104
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 317, 581, 631
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 2 cut(s) 443, 771
BglII AGATCT 1 cut(s) 730
BisI GCNGC 3 cut(s) 58, 294, 542
BlsI GCNGC 3 cut(s) 59, 295, 543
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 2 cut(s) 44, 104
BmgBI CACGTC 2 cut(s) 604, 641
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 713
BmrFI CCNGG 2 cut(s) 44, 104
BmsI GCATC 4 cut(s) 59, 217, 528, 637
BpiI GAAGAC 3 cut(s) 90, 142, 833
BpmI CTGGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 490
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 3 cut(s) 42, 265, 297
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 323, 353, 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 42, 265, 297
BseGI GGATG 2 cut(s) 50, 543
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 1 cut(s) 202
BseRI GAGGAG 4 cut(s) 24, 344, 842, 866
BseXI GCAGC 1 cut(s) 528
BshFI GGCC 2 cut(s) 77, 712
BshTI ACCGGT 1 cut(s) 198
BsiSI CCGG 2 cut(s) 44, 199
BslFI GGGAC 3 cut(s) 25, 107, 627
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 3 cut(s) 317, 581, 631
BsmBI CGTCTC 1 cut(s) 317
BsmFI GGGAC 3 cut(s) 25, 107, 627
BsnI GGCC 2 cut(s) 77, 712
Bso31I GGTCTC 1 cut(s) 631
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 4 cut(s) 364, 654, 670, 730
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 5 cut(s) 58, 294, 428, 650, 684
BspANI GGCC 2 cut(s) 77, 712
BspLI GGNNCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 631
BsrBI CCGCTC 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 42, 265, 297
BssMI GATC 4 cut(s) 364, 654, 670, 730
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 3 cut(s) 488, 845, 884
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 2 cut(s) 265, 297
BstF5I GGATG 2 cut(s) 50, 543
BstKTI GATC 4 cut(s) 367, 657, 673, 733
BstMAI GTCTC 3 cut(s) 317, 581, 631
BstMBI GATC 4 cut(s) 364, 654, 670, 730
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 42, 102
BstV1I GCAGC 1 cut(s) 528
BstV2I GAAGAC 3 cut(s) 90, 142, 833
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 2 cut(s) 77, 712
BtgI CCRYGG 2 cut(s) 265, 297
BtgZI GCGATG 1 cut(s) 217
BtrI CACGTC 2 cut(s) 604, 641
BtsCI GGATG 2 cut(s) 50, 543
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 711
Csp6I GTAC 1 cut(s) 774
CspAI ACCGGT 1 cut(s) 198
CviAII CATG 2 cut(s) 298, 590
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 1 cut(s) 545
DpnI GATC 4 cut(s) 366, 656, 672, 732
DpnII GATC 4 cut(s) 364, 654, 670, 730
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 488, 845, 884
EarI CTCTTC 3 cut(s) 488, 845, 884
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 2 cut(s) 301, 593
FaiI YATR 8 cut(s) 284, 299, 501, 533, 555, 574, 591, 755
FaqI GGGAC 3 cut(s) 25, 107, 627
FatI CATG 2 cut(s) 297, 589
FbaI TGATCA 1 cut(s) 364
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 3 cut(s) 58, 294, 542
FokI GGATG 2 cut(s) 37, 550
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 58, 294, 542
FspBI CTAG 2 cut(s) 443, 771
GluI GCNGC 3 cut(s) 58, 294, 542
GsuI CTGGAG 1 cut(s) 700
HaeIII GGCC 2 cut(s) 77, 712
HapII CCGG 2 cut(s) 44, 199
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 301, 593
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 4 cut(s) 120, 206, 515, 690
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 44, 199
HphI GGTGA 4 cut(s) 298, 416, 442, 664
Hpy166II GTNNAC 2 cut(s) 262, 607
Hpy188I TCNGA 6 cut(s) 26, 97, 385, 668, 730, 747
Hpy188III TCNNGA 3 cut(s) 17, 275, 644
Hpy8I GTNNAC 2 cut(s) 262, 607
HpyAV CCTTC 7 cut(s) 79, 179, 196, 418, 464, 640, 725
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 4 cut(s) 87, 489, 603, 640
HpyCH4V TGCA 1 cut(s) 593
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 4 cut(s) 87, 489, 603, 640
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 301, 593
Ksp22I TGATCA 1 cut(s) 364
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 4 cut(s) 364, 654, 670, 730
LmnI GCTCC 3 cut(s) 446, 681, 855
LpnPI CCDG 8 cut(s) 57, 67, 89, 116, 212, 288, 435, 664
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 4 cut(s) 59, 217, 528, 637
MaeI CTAG 2 cut(s) 443, 771
MaeII ACGT 4 cut(s) 87, 489, 603, 640
MaeIII GTNAC 1 cut(s) 658
MalI GATC 4 cut(s) 366, 656, 672, 732
MbiI CCGCTC 1 cut(s) 684
MboI GATC 4 cut(s) 364, 654, 670, 730
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 1 cut(s) 804
MlyI GAGTC 2 cut(s) 129, 200
MmeI TCCRAC 2 cut(s) 183, 868
MseI TTAA 4 cut(s) 261, 342, 354, 507
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 2 cut(s) 44, 199
MspR9I CCNGG 2 cut(s) 44, 104
MvaI CCWGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 297
NdeII GATC 4 cut(s) 364, 654, 670, 730
NlaIII CATG 2 cut(s) 301, 593
NlaIV GGNNCC 1 cut(s) 713
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 658
PfeI GAWTC 2 cut(s) 515, 690
PflMI CCANNNNNTGG 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 102
PinAI ACCGGT 1 cut(s) 198
PkrI GCNGC 3 cut(s) 59, 295, 543
PleI GAGTC 2 cut(s) 128, 200
PpsI GAGTC 2 cut(s) 128, 200
Ppu21I YACGTR 1 cut(s) 490
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 713
PspPI GGNCC 1 cut(s) 711
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 4 cut(s) 261, 342, 354, 507
SatI GCNGC 3 cut(s) 58, 294, 542
Sau3AI GATC 4 cut(s) 364, 654, 670, 730
Sau96I GGNCC 1 cut(s) 711
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 2 cut(s) 129, 200
ScrFI CCNGG 2 cut(s) 44, 104
SduI GDGCHC 1 cut(s) 31
SetI ASST 9 cut(s) 90, 188, 258, 444, 492, 606, 622, 643, 852
SfaNI GCATC 4 cut(s) 59, 217, 528, 637
SmiMI CAYNNNNRTG 1 cut(s) 536
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 1 cut(s) 804
SsiI CCGC 5 cut(s) 58, 294, 428, 650, 684
SspI AATATT 1 cut(s) 505
SspMI CTAG 2 cut(s) 443, 771
StyD4I CCNGG 2 cut(s) 42, 102
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 4 cut(s) 90, 492, 606, 643
TaqI TCGA 2 cut(s) 118, 189
TasI AATT 1 cut(s) 804
TatI WGTACW 1 cut(s) 773
TauI GCSGC 2 cut(s) 60, 296
TfiI GAWTC 2 cut(s) 515, 690
Tru1I TTAA 4 cut(s) 261, 342, 354, 507
Tru9I TTAA 4 cut(s) 261, 342, 354, 507
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 725
TspGWI ACGGA 2 cut(s) 27, 341
Van91I CCANNNNNTGG 1 cut(s) 202
VspI ATTAAT 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 2 cut(s) 443, 771
ZraI GACGTC 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.