Rh2DG432300

non-haem dioxygenase in morphine synthesis N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014284
Physical Location & Seq
Reverse (-)
62471106 .. 62473587
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG432300.1

Sequence Viewer

Length: 966 bp
ATGGCAAGCTTACCTGAACCCGTCCACGAAAACCCCATTGATTTTCGTGCCCCGCCACCTTCTCCAGTTGCCTCTGGCCGGCGATCATCCCTCACAAACGACGATGTCATTACCGAATTCCTCCAGCACTCCCTCAATGTCCCTGACCTCATCTTGCCGGACAAATTCTTTCCAAAACAAAAATCAGTTGAAAATCCCCCCACAATTGATTTTGAAACATTGTGTTCAAATCAATATGATGATGCTAGTGTTACCAAGATTATTGAGTCAATAGCAAGAATTGGGTGTTTTCAGTTAGTGAACCATGGAATTTCAAGTGATTTTGTAAGGTCAGTGCAGGCTGAAGCCACCGGGATTTTCCAGGTGCCACTGGAGAAGAGGGCGGACATAACAAGGTCACCGGAGAAGCCGTATGGGTTCGAGGAAGTTCACGGTGAGGAAGCTGACACCGAATTGAGTGAAGAGTTCGTTTGGTGTAGAGAACAAGGTTTGAAGTTGGCAATGGAGGGAATTTGGCCAATTGGGCATTCAAATTATTCAAATTTCAGCAAGAAATTGGAGACCCTTATGACAGACATTGAGAAGATTTGTGAGAGAATTCTACAAAGCTTATTGAACTTTAAACAAAAACAATCTGTTAATGGAAATGCTTTGGTTCAAGGAAAAGAACTTGGGACAGTTTGTTGTTTTTACAAGCACAATCAGAATGTTTTAGCTGATAAGTGGGATAGCTATCTGAGATATGATGTGATTAGGATGCTGATAAGAGGAACTGATTACTCTCATGCCTTGTGTCTGCATCTTTGTGATGGATCCGCAGAGTTTCATGTTTACTCCAAGAAAGGTTGGGTTTCTTTTAGCCCAGATAAAGATGCTCTTGTAGTTACCACAGGGGACCAAATGCAGGTAAATCAAATTTACTGTTGCTGGTACATTTGTATGCTATATATTAGTAGCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

321

Amino Acids

36.44

Weight (kDa)

5.16

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 67 - 152 7.3e-14 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79760 AT1G79760
fragaria_vesca FvH4_6g32300 FvH4_6g32300
malus_domestica MD09G1204500.v1.1
prunus_persica Prupe.3G060100_v2.0.a1
pyrus_communis pycom09g12140
rosa_chinensis RchiOBHm_Chr2g0140341
rosa_laevigata RLG00000019860
rosa_multiflora Rmu_sc0005446.1_g000032
rosa_roxburghii Rroxscaffold_2G00104920
rosa_rugosa Rorug02G0361700
rosa_samantha Rh2AG413000 Rh2BG423400 Rh2CG399000 Rh2DG432300
rosa_wichuraiana Rw2G033850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 364
AciI CCGC 3 cut(s) 53, 383, 816
AclWI GGATC 2 cut(s) 807, 820
AcoI YGGCCR 2 cut(s) 76, 515
AcsI RAATTY 7 cut(s) 116, 164, 309, 510, 541, 597, 915
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 932
AfiI CCNNNNNNNGG 2 cut(s) 78, 904
AgsI TTSAA 9 cut(s) 191, 215, 228, 315, 493, 531, 540, 616, 659
AjnI CCWGG 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
AluBI AGCT 6 cut(s) 9, 443, 609, 716, 732, 957
AluI AGCT 6 cut(s) 9, 443, 609, 716, 732, 957
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 2 cut(s) 807, 820
AoxI GGCC 2 cut(s) 76, 515
ApoI RAATTY 7 cut(s) 116, 164, 309, 510, 541, 597, 915
AspS9I GGNCC 1 cut(s) 895
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 390, 446
AvaII GGWCC 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 52
BaeI ACNNNNGTAYC 2 cut(s) 922, 955
BalI TGGCCA 1 cut(s) 517
BamHI GGATCC 1 cut(s) 812
BanI GGYRCC 1 cut(s) 364
BccI CCATC 1 cut(s) 803
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 352, 362
Bme18I GGWCC 1 cut(s) 895
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 3 cut(s) 366, 814, 896
BmrFI CCNGG 2 cut(s) 352, 362
BmsI GCATC 4 cut(s) 232, 747, 808, 862
BpmI CTGGAG 3 cut(s) 48, 107, 392
BpuMI CCSGG 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 904
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 65, 375
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 86, 762
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 78, 904
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 2 cut(s) 65, 375
BseSI GKGCMC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 356
BshFI GGCC 2 cut(s) 78, 517
BshNI GGYRCC 1 cut(s) 364
BsiSI CCGG 4 cut(s) 79, 158, 351, 401
BslFI GGGAC 3 cut(s) 125, 688, 908
BslI CCNNNNNNNGG 2 cut(s) 78, 904
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 3 cut(s) 125, 688, 908
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 78, 517
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 83, 812
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 53, 383, 816
BspANI GGCC 2 cut(s) 78, 517
BspCNI CTCAG 1 cut(s) 729
BspLI GGNNCC 3 cut(s) 366, 814, 896
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 2 cut(s) 807, 820
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 2 cut(s) 65, 375
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 83, 812
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 434, 679, 923
Bst6I CTCTTC 2 cut(s) 371, 456
BstC8I GCNNGC 3 cut(s) 7, 80, 339
BstDEI CTNAG 1 cut(s) 737
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 2 cut(s) 86, 762
BstKTI GATC 2 cut(s) 86, 815
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 83, 812
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 1 cut(s) 362
BstPI GGTNACC 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 350, 360
BstSLI GKGCMC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
BsuRI GGCC 2 cut(s) 78, 517
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 86, 762
BtsIMutI CAGTG 2 cut(s) 339, 368
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 3 cut(s) 7, 80, 339
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 895
Csp6I GTAC 1 cut(s) 931
CviAII CATG 3 cut(s) 305, 785, 827
CviQI GTAC 1 cut(s) 931
DdeI CTNAG 1 cut(s) 737
DpnI GATC 2 cut(s) 85, 814
DpnII GATC 2 cut(s) 83, 812
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 2 cut(s) 76, 515
Eam1104I CTCTTC 2 cut(s) 371, 456
EarI CTCTTC 2 cut(s) 371, 456
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 396
EcoRI GAATTC 2 cut(s) 116, 597
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 308, 788, 830
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 3 cut(s) 125, 688, 908
FatI CATG 3 cut(s) 304, 784, 826
FauI CCCGC 1 cut(s) 60
FokI GGATG 2 cut(s) 73, 769
FspBI CTAG 1 cut(s) 246
GsuI CTGGAG 3 cut(s) 48, 107, 392
HaeIII GGCC 2 cut(s) 78, 517
HapII CCGG 4 cut(s) 79, 158, 351, 401
Hin1II CATG 3 cut(s) 308, 788, 830
HindIII AAGCTT 2 cut(s) 7, 607
HinfI GANTC 1 cut(s) 266
HpaII CCGG 4 cut(s) 79, 158, 351, 401
HphI GGTGA 2 cut(s) 390, 446
Hpy166II GTNNAC 4 cut(s) 25, 301, 430, 832
Hpy188I TCNGA 2 cut(s) 705, 738
Hpy8I GTNNAC 4 cut(s) 25, 301, 430, 832
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 3 cut(s) 434, 679, 923
HpyCH4V TGCA 3 cut(s) 337, 799, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 1 cut(s) 737
Hsp92II CATG 3 cut(s) 308, 788, 830
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 83, 812
LweI GCATC 4 cut(s) 232, 747, 808, 862
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 250, 396, 883
MalI GATC 2 cut(s) 85, 814
MboI GATC 2 cut(s) 83, 812
MboII GAAGA 3 cut(s) 388, 473, 595
MfeI CAATTG 2 cut(s) 204, 519
MflI RGATCY 1 cut(s) 812
MhlI GDGCHC 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 517
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 517
MroNI GCCGGC 1 cut(s) 78
MscI TGGCCA 1 cut(s) 517
MseI TTAA 4 cut(s) 621, 639, 960, 964
MslI CAYNNNNRTG 2 cut(s) 804, 938
Msp20I TGGCCA 1 cut(s) 517
MspI CCGG 4 cut(s) 79, 158, 351, 401
MspR9I CCNGG 2 cut(s) 352, 362
MunI CAATTG 2 cut(s) 204, 519
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 523
NaeI GCCGGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 352
NcoI CCATGG 1 cut(s) 304
NdeII GATC 2 cut(s) 83, 812
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 3 cut(s) 308, 788, 830
NlaIV GGNNCC 3 cut(s) 366, 814, 896
NmuCI GTSAC 1 cut(s) 396
PacI TTAATTAA 1 cut(s) 964
PctI GAATGC 1 cut(s) 526
PdiI GCCGGC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 104
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 360
PspEI GGTNACC 1 cut(s) 396
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 366, 814, 896
PspPI GGNCC 1 cut(s) 895
PsuI RGATCY 1 cut(s) 812
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 932
RsaNI GTAC 1 cut(s) 931
RseI CAYNNNNRTG 2 cut(s) 804, 938
SaqAI TTAA 4 cut(s) 621, 639, 960, 964
Sau3AI GATC 2 cut(s) 83, 812
Sau96I GGNCC 1 cut(s) 895
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 352, 362
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 4 cut(s) 232, 747, 808, 862
SinI GGWCC 1 cut(s) 895
SmiMI CAYNNNNRTG 2 cut(s) 804, 938
SsiI CCGC 3 cut(s) 53, 383, 816
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 350, 360
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 434, 679, 923
TaqI TCGA 1 cut(s) 420
Tru1I TTAA 4 cut(s) 621, 639, 960, 964
Tru9I TTAA 4 cut(s) 621, 639, 960, 964
TscAI CASTG 2 cut(s) 339, 375
TseFI GTSAC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 815
TspRI CASTG 2 cut(s) 339, 375
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 895
XapI RAATTY 7 cut(s) 116, 164, 309, 510, 541, 597, 915
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.