AT1G79970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005256
Physical Location & Seq
Forward (+)
30082077 .. 30083894
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79970.3

Sequence Viewer

Length: 723 bp
ATGGGTGAGGCAAGTGATTCAGATTCGTCTGATGAGTCTTTGAAACACAATAGCACCCCACCACTCTTTAGCATCTCTGGCTTCTTTTGTGTTGCCAAAGGAGGAGACTCTGATCCCGGTAGGAGCCCTACTTCTCCCCTTGATTTTGGAGTCTTTGGTGGCCTCTTTAGCCCCAGGTCTTCTTCTTCTTCACCCCTCCACCGAAACAAATGGCTTTCTCACAAAGTCGGGCTTTCTCTTCTGAGCTCCAGCTTCGAACTAGGCGATGATCCATTCAGAAGGGACTACATTGTGCTTGCCCCTCAGGTCAAGGTCAACAATGTTAATACAGCAACTCCCAAGCTTTCCAGTGATCCTTGTGTCATTGTGGAGGAACCAAGGAGATCAAGCTCATCATCCCCTATGGATATCATCTCCACGTACTCTCGCTCCCTCTCTGGGCGTGAGATGGCTCTCTCTGAGGACTATACCTGTATAATTTCTCATGGACCAAACCCAAAAACAACTTATATATTTGGCGATTGCATCCTGGATTGTGACCCCAAGGACTTGGGAAAAGAAGATATTGAGATACACGAAGAAGGGGATGATTCTTTTAGCACAGAAAAACCTCAAAATCACAGGGAAGTATCAGCAGAAAAGGAAAGTGAGAACGCTGGTGCTGAAGAATCATGTTACGAAGAGGAGGATCTGTTTCCTATGGCAATGCCTCTTAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

240

Amino Acids

26.17

Weight (kDa)

4.55

Isoelectric Point (pI)

69.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 107, 263, 347, 696
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 2 cut(s) 173, 528
AluBI AGCT 4 cut(s) 246, 252, 343, 390
AluI AGCT 4 cut(s) 246, 252, 343, 390
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 4 cut(s) 107, 263, 347, 696
AoxI GGCC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 17, 183
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 303
BanII GRGCYC 2 cut(s) 128, 248
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 175, 530
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 117, 175, 530
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 125, 375
BmrFI CCNGG 3 cut(s) 117, 175, 530
BmsI GCATC 2 cut(s) 81, 534
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 232
Bpu14I TTCGAA 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 173, 377, 543
BsaXI ACNNNNNCTCC 6 cut(s) 319, 349, 413, 443, 677, 707
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 348
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 175, 530
BseDI CCNNGG 3 cut(s) 173, 377, 543
BseGI GGATG 3 cut(s) 395, 525, 592
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 233, 317, 450
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 117, 698
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 128, 248
Bsp143I GATC 5 cut(s) 112, 268, 352, 383, 688
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 3 cut(s) 234, 316, 451
BspLI GGNNCC 2 cut(s) 125, 375
BspPI GGATC 4 cut(s) 107, 263, 347, 696
BspT104I TTCGAA 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 173, 377, 543
BssMI GATC 5 cut(s) 112, 268, 352, 383, 688
BssT1I CCWWGG 2 cut(s) 377, 543
Bst2UI CCWGG 2 cut(s) 175, 530
Bst6I CTCTTC 2 cut(s) 243, 675
BstBAI YACGTR 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 242, 303, 459
BstF5I GGATG 3 cut(s) 395, 525, 592
BstKTI GATC 5 cut(s) 115, 271, 355, 386, 691
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 5 cut(s) 112, 268, 352, 383, 688
BstMWI GCNNNNNNNGC 2 cut(s) 78, 168
BstNI CCWGG 2 cut(s) 175, 530
BstSCI CCNGG 3 cut(s) 115, 173, 528
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 395, 525, 592
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 421
CviAII CATG 2 cut(s) 485, 672
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 3 cut(s) 242, 303, 459
DpnI GATC 5 cut(s) 114, 270, 354, 385, 690
DpnII GATC 5 cut(s) 112, 268, 352, 383, 688
Eam1104I CTCTTC 2 cut(s) 243, 675
EarI CTCTTC 2 cut(s) 243, 675
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 377, 543
Eco24I GRGCYC 2 cut(s) 128, 248
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 173, 528
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 377, 543
EcoT38I GRGCYC 2 cut(s) 128, 248
ErhI CCWWGG 2 cut(s) 377, 543
FaeI CATG 2 cut(s) 488, 675
FaiI YATR 8 cut(s) 404, 468, 476, 486, 510, 512, 673, 701
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 484, 671
FokI GGATG 3 cut(s) 382, 512, 599
FriOI GRGCYC 2 cut(s) 128, 248
FspBI CTAG 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 117
Hin1II CATG 2 cut(s) 488, 675
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 7 cut(s) 17, 23, 35, 107, 150, 590, 668
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 17, 183
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 6 cut(s) 22, 31, 112, 243, 278, 460
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 273, 575
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 168
HpyF3I CTNAG 3 cut(s) 242, 303, 459
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 2 cut(s) 488, 675
Kzo9I GATC 5 cut(s) 112, 268, 352, 383, 688
LmnI GCTCC 3 cut(s) 123, 251, 434
LweI GCATC 2 cut(s) 81, 534
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 536, 674
MalI GATC 5 cut(s) 114, 270, 354, 385, 690
MboI GATC 5 cut(s) 112, 268, 352, 383, 688
MboII GAAGA 9 cut(s) 171, 174, 177, 180, 230, 572, 590, 677, 692
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 128, 248
MluCI AATT 1 cut(s) 477
MlyI GAGTC 3 cut(s) 44, 101, 159
MseI TTAA 2 cut(s) 324, 714
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 3 cut(s) 117, 175, 530
MvaI CCWGG 2 cut(s) 175, 530
MwoI GCNNNNNNNGC 2 cut(s) 78, 168
NciI CCSGG 1 cut(s) 117
NdeII GATC 5 cut(s) 112, 268, 352, 383, 688
NlaIII CATG 2 cut(s) 488, 675
NlaIV GGNNCC 2 cut(s) 125, 375
NmuCI GTSAC 1 cut(s) 536
NspV TTCGAA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 4 cut(s) 17, 23, 590, 668
PfoI TCCNGGA 1 cut(s) 528
PleI GAGTC 3 cut(s) 43, 101, 158
PpsI GAGTC 3 cut(s) 43, 101, 158
Ppu21I YACGTR 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 173, 528
PspGI CCWGG 2 cut(s) 173, 528
PspN4I GGNNCC 2 cut(s) 125, 375
PspPI GGNCC 1 cut(s) 488
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacI GAGCTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 324, 714
Sau3AI GATC 5 cut(s) 112, 268, 352, 383, 688
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 3 cut(s) 44, 101, 159
ScrFI CCNGG 3 cut(s) 117, 175, 530
SduI GDGCHC 2 cut(s) 128, 248
SfaNI GCATC 2 cut(s) 81, 534
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 488
Sse9I AATT 1 cut(s) 477
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 3 cut(s) 115, 173, 528
StyI CCWWGG 2 cut(s) 377, 543
TaiI ACGT 1 cut(s) 422
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 477
TfiI GAWTC 4 cut(s) 17, 23, 590, 668
Tru1I TTAA 2 cut(s) 324, 714
Tru9I TTAA 2 cut(s) 324, 714
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 536
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 488
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.