Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005256

Physical Location & Seq

Genomic Coordinates Forward (+)

5137936 .. 5140909

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G071600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTAAGCCTGAAACATACAAGCAACTCACTTTTCAGTATTCATGGTTTCTTTACAGGGTTTGGTAATAAAGGTTCGTTAGATTCTGACTCAGTTAGGAGTGCTACATCTCCCCTAGATTTCAGAGTTCTTTACAATCTTAGCAACCCATTTAGTCTCAAGTCTGGTAGACCATCGTCACAAAATGGAAATCAAACGAAATGGGATTGTGGTAAAGAAGGCCTCGGCATTGTCAATTCACTCGGTGATGAAACTAAAGCAACTAGTGAAGTTATTGGTTCACCAAAGAGGAAGAATATAATTTTTGGATCACAGGTGAAAACTATCGTCGCTAACTCCTCAAAGATTTATTATGATTCAGACGATTGTCCCATCAAGTCCAAATCTTTAAATAGGAACTACATAACTCTCGATCCCCAACACCAAGCAGACAAAGTGAATGGTTTCTTTGGGAGTGTGGGACGTCCTTTGGAATCTGAACCATCTGAAAACATTGCATCATTCTTGTTGAACTCCAGTGGTTCCTCACAAAGTGGCTCTATGTATGATCCAAACTTGAGGTTCAAAAGTCTTGATTCAGTGGATAAAACTTTGAGTTCATCTTTAGTTTTAGGCAGAAGTTTCCAAGTAGAAAATTCAGTGGGTTTCAAACCCAGTTCACTTCCAGTACCCATTGCCTCTACCCATCAATATGCATCCTCTATCTCTGCAAGAGAGATAGAACTGTCTGAGGATTATACCTGTATAATTTCTCATGGTCCAAAACCTAAGACAACTCATATTTTTGGGGACTGTATTTTGGAATGTCACACAACTGAGTTAAACAATTTTGATGAAGCAAAACTCTGGATAGAATCACCTCGAGTGGCTAAGTACCAGGACAGATTGGCAAATGAGCATTTGGATGAAGCTTTGAGACTCTGTTACACCTGCAAGAAGAACTTGGATGGAGAAGAAATGTACATGTGCAGAGGTGAGAAAGCATTTTGTAGTTTCGATTGTCATTCGGAGAAGATTTTTGCTGAAGAGGAAATAGAAAGTACTTGTGAAAATTCTGCAGGTAGCTCTTCTGAAAGCTACCATGAAGATCTCTTCTTATTCGGCATGCATTGTGAGGACATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

376

Amino Acids

41.48

Weight (kDa)

5.3

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79970 AT1G79970 AT1G79970
fragaria_vesca	FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090
prunus_persica	Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137791
rosa_laevigata	RLG00000019676
rosa_multiflora	Rmu_sc0025302.1_g000001 Rmu_sc0041296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106840
rosa_rugosa	Rorug02G0345800 Rorug02G0345900 Rorug02G0346000
rosa_samantha	Rh2AG392800 Rh2BG400500 Rh2CG379500 Rh2DG415400
rosa_wichuraiana	Rw2G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	938
AatII	GACGTC	1 cut(s)	466
Acc36I	ACCTGC	2 cut(s)	938, 1049
AccI	GTMKAC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	316, 407, 542
AcsI	RAATTY	2 cut(s)	634, 1051
AcuI	CTGAAG	1 cut(s)	1044
AcyI	GRCGYC	1 cut(s)	463
AdeI	CACNNNGTG	2 cut(s)	245, 533
AfaI	GTAC	4 cut(s)	669, 875, 962, 1042
AflIII	ACRYGT	1 cut(s)	963
AgsI	TTSAA	3 cut(s)	511, 565, 649
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	3 cut(s)	911, 1065, 1077
AluI	AGCT	3 cut(s)	911, 1065, 1077
Alw26I	GTCTC	2 cut(s)	161, 910
AlwI	GGATC	3 cut(s)	316, 407, 542
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	634, 1051
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	758
AsuHPI	GGTGA	5 cut(s)	257, 273, 328, 849, 986
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	1 cut(s)	758
BccI	CCATC	5 cut(s)	181, 380, 490, 693, 941
BciT130I	CCWGG	1 cut(s)	878
BcoDI	GTCTC	2 cut(s)	161, 910
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	116, 264
BfmI	CTRYAG	1 cut(s)	1056
BfuAI	ACCTGC	2 cut(s)	938, 1049
BglII	AGATCT	1 cut(s)	1087
BmcAI	AGTACT	1 cut(s)	1042
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	878
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	506, 704
BmuI	ACTGGG	1 cut(s)	648
BoxI	GACNNNNGTC	2 cut(s)	175, 366
BpmI	CTGGAG	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	143, 577
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	516, 654, 665
Bse3DI	GCAATG	2 cut(s)	492, 672
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	695, 910, 952
BseMI	GCAATG	2 cut(s)	492, 672
BseMII	CTCAG	3 cut(s)	105, 720, 807
BseNI	ACTGG	3 cut(s)	516, 654, 665
BseRI	GAGGAG	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	988
BshFI	GGCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	861
BslFI	GGGAC	3 cut(s)	354, 474, 803
BsmAI	GTCTC	2 cut(s)	161, 910
BsmFI	GGGAC	3 cut(s)	354, 474, 803
BsnI	GGCC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	861
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	4 cut(s)	308, 412, 547, 1087
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	3 cut(s)	104, 721, 808
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	1 cut(s)	1060
BspMI	ACCTGC	2 cut(s)	938, 1049
BspPI	GGATC	3 cut(s)	316, 407, 542
BspQI	GCTCTTC	1 cut(s)	1072
BsrDI	GCAATG	2 cut(s)	492, 672
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	3 cut(s)	516, 654, 665
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	308, 412, 547, 1087
BssNI	GRCGYC	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	2 cut(s)	726, 794
Bst6I	CTCTTC	3 cut(s)	1020, 1072, 1097
BstACI	GRCGYC	1 cut(s)	463
BstAUI	TGTACA	1 cut(s)	960
BstC8I	GCNNGC	1 cut(s)	1106
BstDEI	CTNAG	6 cut(s)	91, 140, 729, 768, 816, 870
BstF5I	GGATG	3 cut(s)	695, 910, 952
BstKTI	GATC	4 cut(s)	311, 415, 550, 1090
BstMAI	GTCTC	2 cut(s)	161, 910
BstMBI	GATC	4 cut(s)	308, 412, 547, 1087
BstNI	CCWGG	1 cut(s)	878
BstNSI	RCATGY	2 cut(s)	967, 1108
BstPAI	GACNNNNGTC	2 cut(s)	175, 366
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	1087
BstYI	RGATCY	1 cut(s)	1087
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	695, 910, 952
BtsIMutI	CAGTG	3 cut(s)	523, 585, 645
BveI	ACCTGC	2 cut(s)	938, 1049
Cac8I	GCNNGC	1 cut(s)	1106
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	4 cut(s)	668, 874, 961, 1041
CviAII	CATG	5 cut(s)	44, 755, 964, 1082, 1105
CviJI	RGCY	7 cut(s)	9, 222, 537, 869, 911, 1065, 1077
CviKI_1	RGCY	7 cut(s)	9, 222, 537, 869, 911, 1065, 1077
CviQI	GTAC	4 cut(s)	668, 874, 961, 1041
DdeI	CTNAG	6 cut(s)	91, 140, 729, 768, 816, 870
DpnI	GATC	4 cut(s)	310, 414, 549, 1089
DpnII	GATC	4 cut(s)	308, 412, 547, 1087
DraI	TTTAAA	1 cut(s)	390
DraIII	CACNNNGTG	2 cut(s)	245, 533
Eam1104I	CTCTTC	3 cut(s)	1020, 1072, 1097
EarI	CTCTTC	3 cut(s)	1020, 1072, 1097
Eco147I	AGGCCT	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	1044
Eco88I	CYCGRG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	876
EcoT22I	ATGCAT	2 cut(s)	697, 1110
FaeI	CATG	5 cut(s)	47, 758, 967, 1085, 1108
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FaqI	GGGAC	3 cut(s)	354, 474, 803
FatI	CATG	5 cut(s)	43, 754, 963, 1081, 1104
FblI	GTMKAC	1 cut(s)	169
FokI	GGATG	3 cut(s)	682, 917, 959
FspBI	CTAG	2 cut(s)	116, 264
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	5 cut(s)	47, 758, 967, 1085, 1108
HindIII	AAGCTT	1 cut(s)	909
HinfI	GANTC	7 cut(s)	83, 89, 356, 473, 575, 854, 918
HphI	GGTGA	5 cut(s)	257, 273, 328, 849, 986
Hpy166II	GTNNAC	3 cut(s)	170, 281, 659
Hpy188I	TCNGA	8 cut(s)	88, 125, 361, 478, 487, 730, 1009, 1072
Hpy188III	TCNNGA	3 cut(s)	410, 572, 847
Hpy8I	GTNNAC	3 cut(s)	170, 281, 659
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	726, 794
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	7 cut(s)	497, 695, 710, 933, 969, 1058, 1108
HpyF3I	CTNAG	6 cut(s)	91, 140, 729, 768, 816, 870
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	5 cut(s)	47, 758, 967, 1085, 1108
Kzo9I	GATC	4 cut(s)	308, 412, 547, 1087
LguI	GCTCTTC	1 cut(s)	1072
LweI	GCATC	2 cut(s)	506, 704
MaeI	CTAG	2 cut(s)	116, 264
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	3 cut(s)	177, 806, 923
MalI	GATC	4 cut(s)	310, 414, 549, 1089
MboI	GATC	4 cut(s)	308, 412, 547, 1087
MboII	GAAGA	8 cut(s)	304, 949, 965, 1024, 1037, 1059, 1084, 1097
MflI	RGATCY	1 cut(s)	1087
MluCI	AATT	6 cut(s)	235, 300, 634, 747, 826, 1051
MlyI	GAGTC	2 cut(s)	83, 912
Mph1103I	ATGCAT	2 cut(s)	697, 1110
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	3 cut(s)	5, 389, 821
MslI	CAYNNNNRTG	2 cut(s)	690, 903
MspR9I	CCNGG	1 cut(s)	878
MvaI	CCWGG	1 cut(s)	878
NdeII	GATC	4 cut(s)	308, 412, 547, 1087
NlaIII	CATG	5 cut(s)	47, 758, 967, 1085, 1108
NlaIV	GGNNCC	1 cut(s)	523
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	177, 806
NsiI	ATGCAT	2 cut(s)	697, 1110
NspI	RCATGY	2 cut(s)	967, 1108
PaeI	GCATGC	1 cut(s)	1108
PaeR7I	CTCGAG	1 cut(s)	861
PaqCI	CACCTGC	1 cut(s)	938
PceI	AGGCCT	1 cut(s)	222
PciI	ACATGT	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	1072
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	5 cut(s)	83, 356, 473, 575, 854
PleI	GAGTC	2 cut(s)	83, 912
PpsI	GAGTC	2 cut(s)	83, 912
PscI	ACATGT	1 cut(s)	963
PshAI	GACNNNNGTC	2 cut(s)	175, 366
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	758
PspXI	VCTCGAGB	1 cut(s)	861
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	1087
RsaI	GTAC	4 cut(s)	669, 875, 962, 1042
RsaNI	GTAC	4 cut(s)	668, 874, 961, 1041
RseI	CAYNNNNRTG	2 cut(s)	690, 903
SapI	GCTCTTC	1 cut(s)	1072
SaqAI	TTAA	3 cut(s)	5, 389, 821
Sau3AI	GATC	4 cut(s)	308, 412, 547, 1087
Sau96I	GGNCC	1 cut(s)	758
ScaI	AGTACT	1 cut(s)	1042
SchI	GAGTC	2 cut(s)	83, 912
ScrFI	CCNGG	1 cut(s)	878
SfaNI	GCATC	2 cut(s)	506, 704
SfcI	CTRYAG	1 cut(s)	1056
Sfr274I	CTCGAG	1 cut(s)	861
SinI	GGWCC	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	690, 903
SmlI	CTYRAG	3 cut(s)	158, 556, 861
SmoI	CTYRAG	3 cut(s)	158, 556, 861
SpeI	ACTAGT	1 cut(s)	263
SphI	GCATGC	1 cut(s)	1108
Sse9I	AATT	6 cut(s)	235, 300, 634, 747, 826, 1051
SseBI	AGGCCT	1 cut(s)	222
SspMI	CTAG	2 cut(s)	116, 264
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	876
TaaI	ACNGT	2 cut(s)	726, 794
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	411, 862, 996
TasI	AATT	6 cut(s)	235, 300, 634, 747, 826, 1051
TatI	WGTACW	2 cut(s)	960, 1040
TfiI	GAWTC	5 cut(s)	83, 356, 473, 575, 854
Tru1I	TTAA	3 cut(s)	5, 389, 821
Tru9I	TTAA	3 cut(s)	5, 389, 821
TscAI	CASTG	3 cut(s)	523, 585, 645
TseFI	GTSAC	2 cut(s)	177, 806
Tsp45I	GTSAC	2 cut(s)	177, 806
TspDTI	ATGAA	6 cut(s)	32, 264, 588, 849, 921, 1098
TspRI	CASTG	3 cut(s)	523, 585, 645
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	2 cut(s)	634, 1051
XceI	RCATGY	2 cut(s)	967, 1108
XhoI	CTCGAG	1 cut(s)	861
XmiI	GTMKAC	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	116, 264
ZraI	GACGTC	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	1042
Zsp2I	ATGCAT	2 cut(s)	697, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.