Rroxscaffold_2G00106840

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005256
Physical Location & Seq
Forward (+)
30415125 .. 30417970
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106840.1

Sequence Viewer

Length: 1095 bp
ATGGATGATTCTAATAGTTTAAGCCTGAAACACACAAGTAGCATACTTTTCAGTATTCCTGATTTCTTTGTAGGGTTTGGTAACAAAGGTTCTTCAGATTCTGACTCAGTTAGGAGCCCTACATCTCCTCTGGACCTCAGGCCTTTTTCAAATCTTAGCAACCCATTTAGACTTAGGTCCGCTCGATCATCATCCCACAATGGAAATCACAAGAAATGGGATTGTAGGAAAGCAGGCCTTGGAATTGTGAATTCCCTTGTTGATGAAACCAAAGCTACTAGTGAAGTTCTTGGTTCATCGAAGAGGAAAACCATAATTTTTCGACCACAGGTGGGGAAAAACAACCCTCATTCCTCAAAGCTTTCTGGTTCAGATGATTATTCCATGAAGTCCCAATCTTTACCTAGAAACTACATAATTAGGCCACTTTCTGAAACCATATCTCTCAATCCCCAACTCAAACCAGATAAAGTGAATGTTTCATCTGGGTTTGTGGGACTTCCTTTGGAATCTGAACCATCTGAAAACATTGAACCATTTTTGTTGGACTCCAGCAGGGATTCCTCACTGATTGTCTCTATGCAAGGAGAAAGTTCTTTGGGTTTTAAACCAAGTTCACTCCCAGTACCCATTGTCTCTAACCCTCAATATGCATCCTCTATCCCTGCTAGAGAGATGGAACTTTCTGAGGACTATACCTGTATAATTTCTCATGGTCCAAACCCGAAGACTACTCATATTTTTTGTGACTGTATATTGGAATGTCACACAAAAGATTTAAACAATGTTGACAAAGAAATAGTCGAGATAGAATCACCTCGAGTGGGTCAGCACCAGGAGGGATTGACACATGACCCTTCAGATGAAATTTTGAGGTTCTGTTACACCTGCAAGAAGAACTTGCTAGGAGAGGAAATTTACATGTGCAGAAGTGAGAAAGCATTTTGTAGTTTTGATTGTCACTCAGAAAAGATTTTTGCTGAAGAGGAAGCAGAAGATACTTGGGATAAGTCTGCAGGAAGCTCTCCTAAAAGCTACCCAGAAGATCTCTTCTTATTGGGTATGCATAGTCAGGAGACTCGGGACATACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

364

Amino Acids

40.42

Weight (kDa)

5.44

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 284 - 330 2.9e-12 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 896
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 250, 867, 915
AcuI CTGAAG 3 cut(s) 78, 843, 1002
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 332, 824
AflIII ACRYGT 1 cut(s) 921
AgsI TTSAA 2 cut(s) 150, 533
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 834
AluBI AGCT 4 cut(s) 275, 361, 1023, 1035
AluI AGCT 4 cut(s) 275, 361, 1023, 1035
Alw26I GTCTC 3 cut(s) 580, 640, 1070
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 2 cut(s) 819, 1080
AoxI GGCC 3 cut(s) 140, 235, 422
ApoI RAATTY 3 cut(s) 250, 867, 915
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
AspS9I GGNCC 3 cut(s) 133, 177, 716
AsuHPI GGTGA 1 cut(s) 807
AvaI CYCGRG 2 cut(s) 819, 1080
AvaII GGWCC 3 cut(s) 133, 177, 716
AxyI CCTNAGG 1 cut(s) 137
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 734
BccI CCATC 2 cut(s) 526, 670
BciT130I CCWGG 1 cut(s) 836
BcoDI GTCTC 3 cut(s) 580, 640, 1070
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 4 cut(s) 279, 405, 669, 905
BfmI CTRYAG 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 896
BglII AGATCT 1 cut(s) 1045
Bme1390I CCNGG 1 cut(s) 836
Bme18I GGWCC 3 cut(s) 133, 177, 716
BmeT110I CYCGRG 2 cut(s) 819, 1080
BmgT120I GGNCC 3 cut(s) 133, 177, 716
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 836
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 734
BpmI CTGGAG 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 824
Bse1I ACTGG 1 cut(s) 623
Bse21I CCTNAGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 3 cut(s) 10, 191, 653
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 332, 824
BseMII CTCAG 4 cut(s) 120, 151, 678, 978
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 946
BshFI GGCC 3 cut(s) 142, 237, 424
BsiHKCI CYCGRG 2 cut(s) 819, 1080
BslFI GGGAC 2 cut(s) 376, 510
BslI CCNNNNNNNGG 2 cut(s) 332, 824
BsmAI GTCTC 3 cut(s) 580, 640, 1070
BsmFI GGGAC 2 cut(s) 376, 510
BsnI GGCC 3 cut(s) 142, 237, 424
BsoBI CYCGRG 2 cut(s) 819, 1080
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 185, 1045
BspACI CCGC 1 cut(s) 180
BspANI GGCC 3 cut(s) 142, 237, 424
BspCNI CTCAG 4 cut(s) 119, 150, 679, 977
BspLI GGNNCC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 1018
BspMI ACCTGC 1 cut(s) 896
BsrBI CCGCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 185, 1045
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 2 cut(s) 752, 1092
Bst6I CTCTTC 3 cut(s) 296, 978, 1055
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 6 cut(s) 106, 137, 155, 173, 687, 964
BstF5I GGATG 3 cut(s) 10, 191, 653
BstKTI GATC 2 cut(s) 188, 1048
BstMAI GTCTC 3 cut(s) 580, 640, 1070
BstMBI GATC 2 cut(s) 185, 1045
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 1 cut(s) 925
BstPAI GACNNNNGTC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 834
BstSFI CTRYAG 1 cut(s) 1014
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
Bsu36I CCTNAGG 1 cut(s) 137
BsuRI GGCC 3 cut(s) 142, 237, 424
BtsCI GGATG 3 cut(s) 10, 191, 653
BtsIMutI CAGTG 1 cut(s) 566
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 133, 177, 716
Csp6I GTAC 1 cut(s) 626
CviAII CATG 4 cut(s) 385, 713, 851, 922
CviJI RGCY 9 cut(s) 24, 117, 142, 237, 275, 361, 424, 1023, 1035
CviKI_1 RGCY 9 cut(s) 24, 117, 142, 237, 275, 361, 424, 1023, 1035
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 6 cut(s) 106, 137, 155, 173, 687, 964
DpnI GATC 2 cut(s) 187, 1047
DpnII GATC 2 cut(s) 185, 1045
DraI TTTAAA 2 cut(s) 607, 780
Eam1104I CTCTTC 3 cut(s) 296, 978, 1055
EarI CTCTTC 3 cut(s) 296, 978, 1055
Eco130I CCWWGG 1 cut(s) 238
Eco147I AGGCCT 2 cut(s) 142, 237
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 133, 177, 716
Eco57I CTGAAG 3 cut(s) 78, 843, 1002
Eco81I CCTNAGG 1 cut(s) 137
Eco88I CYCGRG 2 cut(s) 819, 1080
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 834
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 2 cut(s) 655, 1068
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 388, 716, 854, 925
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 884, 916
FaqI GGGAC 2 cut(s) 376, 510
FatI CATG 4 cut(s) 384, 712, 850, 921
FokI GGATG 3 cut(s) 17, 178, 640
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 4 cut(s) 279, 405, 669, 905
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 3 cut(s) 142, 237, 424
Hin1II CATG 4 cut(s) 388, 716, 854, 925
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 8 cut(s) 8, 98, 104, 509, 548, 560, 812, 1078
HphI GGTGA 1 cut(s) 807
Hpy166II GTNNAC 2 cut(s) 617, 790
Hpy188I TCNGA 9 cut(s) 97, 103, 373, 433, 514, 523, 688, 862, 967
Hpy188III TCNNGA 5 cut(s) 59, 131, 805, 1073, 1082
Hpy8I GTNNAC 2 cut(s) 617, 790
HpyAV CCTTC 1 cut(s) 867
HpyCH4III ACNGT 2 cut(s) 752, 1092
HpyCH4V TGCA 6 cut(s) 583, 653, 891, 927, 1016, 1066
HpyF3I CTNAG 6 cut(s) 106, 137, 155, 173, 687, 964
Hsp92II CATG 4 cut(s) 388, 716, 854, 925
Kzo9I GATC 2 cut(s) 185, 1045
LmnI GCTCC 1 cut(s) 114
LweI GCATC 1 cut(s) 662
MaeI CTAG 4 cut(s) 279, 405, 669, 905
MaeIII GTNAC 5 cut(s) 80, 746, 764, 881, 959
MalI GATC 2 cut(s) 187, 1047
MbiI CCGCTC 1 cut(s) 182
MboI GATC 2 cut(s) 185, 1045
MboII GAAGA 8 cut(s) 84, 313, 739, 907, 995, 1007, 1042, 1055
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 7 cut(s) 243, 250, 315, 417, 705, 867, 915
MlyI GAGTC 3 cut(s) 98, 542, 1072
MmeI TCCRAC 1 cut(s) 525
Mph1103I ATGCAT 2 cut(s) 655, 1068
MseI TTAA 3 cut(s) 20, 606, 779
MspR9I CCNGG 1 cut(s) 836
MvaI CCWGG 1 cut(s) 836
NdeII GATC 2 cut(s) 185, 1045
NlaIII CATG 4 cut(s) 388, 716, 854, 925
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 3 cut(s) 746, 764, 959
NsiI ATGCAT 2 cut(s) 655, 1068
NspI RCATGY 1 cut(s) 925
PaeR7I CTCGAG 1 cut(s) 819
PaqCI CACCTGC 1 cut(s) 896
PceI AGGCCT 2 cut(s) 142, 237
PciI ACATGT 1 cut(s) 921
PfeI GAWTC 5 cut(s) 8, 98, 509, 560, 812
PleI GAGTC 3 cut(s) 98, 542, 1072
PpsI GAGTC 3 cut(s) 98, 542, 1072
PscI ACATGT 1 cut(s) 921
PshAI GACNNNNGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 834
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 3 cut(s) 133, 177, 716
PspXI VCTCGAGB 1 cut(s) 819
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstI CTGCAG 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 1045
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 20, 606, 779
Sau3AI GATC 2 cut(s) 185, 1045
Sau96I GGNCC 3 cut(s) 133, 177, 716
SchI GAGTC 3 cut(s) 98, 542, 1072
ScrFI CCNGG 1 cut(s) 836
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 1 cut(s) 1014
Sfr274I CTCGAG 1 cut(s) 819
SinI GGWCC 3 cut(s) 133, 177, 716
SlaI CTCGAG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 819
SmoI CTYRAG 1 cut(s) 819
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 7 cut(s) 243, 250, 315, 417, 705, 867, 915
SseBI AGGCCT 2 cut(s) 142, 237
SsiI CCGC 1 cut(s) 180
SspMI CTAG 4 cut(s) 279, 405, 669, 905
StuI AGGCCT 2 cut(s) 142, 237
StyD4I CCNGG 1 cut(s) 834
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 752, 1092
TaqI TCGA 5 cut(s) 184, 299, 322, 804, 820
TasI AATT 7 cut(s) 243, 250, 315, 417, 705, 867, 915
TfiI GAWTC 5 cut(s) 8, 98, 509, 560, 812
Tru1I TTAA 3 cut(s) 20, 606, 779
Tru9I TTAA 3 cut(s) 20, 606, 779
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 3 cut(s) 746, 764, 959
Tsp45I GTSAC 3 cut(s) 746, 764, 959
TspDTI ATGAA 5 cut(s) 279, 285, 401, 471, 879
TspRI CASTG 1 cut(s) 573
VpaK11BI GGWCC 3 cut(s) 133, 177, 716
XapI RAATTY 3 cut(s) 250, 867, 915
XceI RCATGY 1 cut(s) 925
XhoI CTCGAG 1 cut(s) 819
XspI CTAG 4 cut(s) 279, 405, 669, 905
Zsp2I ATGCAT 2 cut(s) 655, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.