Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005256

Physical Location & Seq

Genomic Coordinates Reverse (-)

43157115 .. 43158635

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGCAGACGAAGTACCTCTGCTCAACCTCTTTGATTCCTACTGGTTTGAACACGCAGTTTTCAGTTCCAAACCCCATGCAGCAGCAAACAACCCAAGTCTCCAACTGGACCAAGAAGATCAAATACTCCAAGAACCAAACCCTTCAGGATTGCCAACCCTCATCGTGAGGTCACTAAGTGACCAATTCCTGGACACCAAGTCAAGCCTTTTCTCCGATTCGAGCTTCTCTCCCCACTCGGTTCTCCCCACTCGGTCACGAAAGCTTCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCTAGAGAGAGTGTTCCTGAAAAACAAGTACTTGAGGTTGGGTCAGCACCACTGAAGAAAAGGGTGTTGCACAGTGAAAGATCAAAAACAAGGAAAAGATTAGGGAGCAGCAAGAGCTTGTCGGACCTCGAGTTTGACGAGCTTAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAAGGACTTGAAGCTGGTTTCGATAATTCCCGGCTTGCAAAGACTAGGAGTTAGTGATGAAGGTGGGGAAGAAGATAGAGATGAAGAGAAGAGGATTGATGGAAGTCATCATCATTCACATGTTGTTTCCAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGGACCAGTTGATGAATTGGAGAGTTCCATCTGCTGTTGATAAAGACATGAAGCATCATCTCAAGTTCTGGGCTCATACAGTTGCATCAACCGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

258

Amino Acids

29.29

Weight (kDa)

5.67

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79970 AT1G79970 AT1G79970
fragaria_vesca	FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090
prunus_persica	Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137791
rosa_laevigata	RLG00000019676
rosa_multiflora	Rmu_sc0025302.1_g000001 Rmu_sc0041296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106840
rosa_rugosa	Rorug02G0345800 Rorug02G0345900 Rorug02G0346000
rosa_samantha	Rh2AG392800 Rh2BG400500 Rh2CG379500 Rh2DG415400
rosa_wichuraiana	Rw2G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	4 cut(s)	132, 254, 383, 663
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	18, 297, 339
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	2 cut(s)	53, 508
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	192, 626
AluBI	AGCT	6 cut(s)	228, 268, 426, 451, 511, 647
AluI	AGCT	6 cut(s)	228, 268, 426, 451, 511, 647
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	4 cut(s)	5, 83, 86, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspS9I	GGNCC	3 cut(s)	112, 433, 679
AsuC2I	CCSGG	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	3 cut(s)	112, 433, 679
BanII	GRGCYC	1 cut(s)	751
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	95, 98, 429
BccI	CCATC	2 cut(s)	590, 712
BciT130I	CCWGG	2 cut(s)	194, 628
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	312, 542
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	4 cut(s)	6, 84, 87, 418
BlsI	GCNGC	4 cut(s)	7, 85, 88, 419
BmcAI	AGTACT	2 cut(s)	297, 339
Bme1390I	CCNGG	3 cut(s)	194, 528, 628
Bme18I	GGWCC	3 cut(s)	112, 433, 679
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	112, 433, 679
BmrFI	CCNGG	3 cut(s)	194, 528, 628
BmsI	GCATC	3 cut(s)	643, 739, 770
BpiI	GAAGAC	1 cut(s)	498
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpuEI	CTTGAG	2 cut(s)	362, 722
BpuMI	CCSGG	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	50, 114, 682
BseBI	CCWGG	2 cut(s)	194, 628
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	3 cut(s)	50, 114, 682
BseXI	GCAGC	3 cut(s)	95, 98, 429
BshFI	GGCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	285, 528
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	631
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	121, 389, 466
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	1 cut(s)	478
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	50, 114, 682
BssMI	GATC	3 cut(s)	121, 389, 466
Bst2UI	CCWGG	2 cut(s)	194, 628
Bst4CI	ACNGT	3 cut(s)	383, 757, 769
Bst6I	CTCTTC	2 cut(s)	576, 581
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	179, 486
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	3 cut(s)	124, 392, 469
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	121, 389, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 653
BstNI	CCWGG	2 cut(s)	194, 628
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	192, 526, 626
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	95, 98, 429
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	3 cut(s)	359, 388, 483
Cac8I	GCNNGC	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	112, 433, 679
Csp6I	GTAC	3 cut(s)	17, 296, 338
CviAII	CATG	3 cut(s)	80, 617, 724
CviQI	GTAC	3 cut(s)	17, 296, 338
DdeI	CTNAG	2 cut(s)	179, 486
DpnI	GATC	3 cut(s)	123, 391, 468
DpnII	GATC	3 cut(s)	121, 389, 466
DraIII	CACNNNGTG	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	576, 581
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	2 cut(s)	576, 581
Eco147I	AGGCCT	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	751
Eco47I	GGWCC	3 cut(s)	112, 433, 679
Eco57I	CTGAAG	4 cut(s)	132, 254, 383, 663
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	192, 626
EcoT38I	GRGCYC	1 cut(s)	751
FaeI	CATG	3 cut(s)	83, 620, 727
FaiI	YATR	6 cut(s)	81, 302, 464, 618, 725, 753
FatI	CATG	3 cut(s)	79, 616, 723
Fnu4HI	GCNGC	4 cut(s)	6, 84, 87, 418
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	4 cut(s)	6, 84, 87, 418
FspBI	CTAG	2 cut(s)	312, 542
GluI	GCNGC	4 cut(s)	6, 84, 87, 418
HaeIII	GGCC	1 cut(s)	631
HapII	CCGG	2 cut(s)	285, 528
Hin1II	CATG	3 cut(s)	83, 620, 727
HindIII	AAGCTT	2 cut(s)	266, 645
HinfI	GANTC	2 cut(s)	38, 221
HpaII	CCGG	2 cut(s)	285, 528
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	4 cut(s)	220, 273, 433, 643
Hpy188III	TCNNGA	5 cut(s)	150, 169, 261, 312, 326
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	2 cut(s)	156, 551
HpyCH4III	ACNGT	3 cut(s)	383, 757, 769
HpyCH4V	TGCA	5 cut(s)	8, 83, 379, 535, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 653
HpyF3I	CTNAG	2 cut(s)	179, 486
Hsp92II	CATG	3 cut(s)	83, 620, 727
Kzo9I	GATC	3 cut(s)	121, 389, 466
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	3 cut(s)	95, 98, 429
LweI	GCATC	3 cut(s)	643, 739, 770
MaeI	CTAG	2 cut(s)	312, 542
MaeIII	GTNAC	3 cut(s)	174, 182, 258
MalI	GATC	3 cut(s)	123, 391, 468
MboI	GATC	3 cut(s)	121, 389, 466
MboII	GAAGA	7 cut(s)	131, 376, 503, 578, 581, 593, 598
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	3 cut(s)	188, 522, 691
MmeI	TCCRAC	2 cut(s)	130, 411
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	2 cut(s)	285, 528
MspR9I	CCNGG	3 cut(s)	194, 528, 628
MvaI	CCWGG	2 cut(s)	194, 628
MwoI	GCNNNNNNNGC	2 cut(s)	423, 653
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	121, 389, 466
NlaIII	CATG	3 cut(s)	83, 620, 727
NmuCI	GTSAC	3 cut(s)	174, 182, 258
NspI	RCATGY	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	631
PciI	ACATGT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	38, 221
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	7, 85, 88, 419
PscI	ACATGT	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	192, 626
PspGI	CCWGG	2 cut(s)	192, 626
PspPI	GGNCC	3 cut(s)	112, 433, 679
PspXI	VCTCGAGB	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	3 cut(s)	18, 297, 339
RsaNI	GTAC	3 cut(s)	17, 296, 338
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	6, 84, 87, 418
Sau3AI	GATC	3 cut(s)	121, 389, 466
Sau96I	GGNCC	3 cut(s)	112, 433, 679
ScaI	AGTACT	2 cut(s)	297, 339
ScrFI	CCNGG	3 cut(s)	194, 528, 628
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	3 cut(s)	643, 739, 770
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	3 cut(s)	112, 433, 679
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	3 cut(s)	341, 437, 737
SmoI	CTYRAG	3 cut(s)	341, 437, 737
Sse9I	AATT	3 cut(s)	188, 522, 691
SseBI	AGGCCT	1 cut(s)	631
SspMI	CTAG	2 cut(s)	312, 542
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	3 cut(s)	192, 526, 626
TaaI	ACNGT	3 cut(s)	383, 757, 769
TaqI	TCGA	3 cut(s)	224, 438, 518
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	188, 522, 691
TatI	WGTACW	2 cut(s)	295, 337
TfiI	GAWTC	2 cut(s)	38, 221
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	366, 388, 490
TseFI	GTSAC	3 cut(s)	174, 182, 258
TseI	GCWGC	4 cut(s)	5, 83, 86, 417
Tsp45I	GTSAC	3 cut(s)	174, 182, 258
TspDTI	ATGAA	4 cut(s)	570, 594, 704, 740
TspRI	CASTG	3 cut(s)	366, 388, 490
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	112, 433, 679
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	2 cut(s)	312, 542
ZrmI	AGTACT	2 cut(s)	297, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.