RLG00000019676

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005256
Physical Location & Seq
Reverse (-)
55325016 .. 55326196
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019676

Sequence Viewer

Length: 1098 bp
ATGGCTGATTCTAATAGTTTAAGCCTGAAACACACAAGTAGCATACTTTTCAGTATTCCTGATTTCTTTGTAGGGTTTGGTAACAAAGGTTCTTCAGATTCTGACTCAGTTAGGAGCCCTACATCTCCTCTGGACCTCAGGCCTTTTTCAAATCTTAGCAACCCATTTAGACTTAGGTCCGCTCGATCATCATCCCACAATGGAAATCACAAGAAATGGGATTGTAGGAAAGCAGGCCTTGGCATTGTCAATTCCCTTGTTGATGAAAACAAAGCTACTAGTGAAGTTCTTGGTTCATCGACGAGGAAAACCATAATTTTTCGACCACAGGTGGGGAAAAACAACCCTCTCTCCTCAAAGCTTTGTTCTGGTTCAGATGATTATTCCATGAAGTCCCAATCTTTACCTAGAAACTACATAATTAGGCCACTTTCTGAAACCATATCTCTCAATCCCCAACTCAAACCAGATAAAGTGAATGTTTCATCTGGGTTTGTGGGACTTCCTTTGGAATCTGAACCATCTGAAAACATTGAACCATTTTTGTTGGACTCCAGCAGGGATTCCTCACTGATTGTCTCTATGCAAGGAGAAAGTTCTTTGGGTTTTAAACCAAGTTCACTCCCAGTACCCATTGTCTCTAACCCTCAATATGCATCCTCTATCCCTGCTAGAGAGATGGAACTTTCTGAGGACTATACCTGTATAATTTCTCATGGTCCAAACCCGAAGACTACTCATATTTTTTGTGACTGTATATTGGAATGTCACACAAAAGATTTGAACAATGTTGACAAAGAAATAGTCGAGATAGAATCACCTCGAGTGGGTCAGCCCCAGGAGGGATTGGCACATGACCCTTCAGATGAAATTTTGAGATTCTGTTACACCTGCAAGAAGAACTTGGTAGGAGAGGAAATTTACATGTGCAGAAGTGAGAAAGCATTTTGTAGTTTTGATTGTCACTCAGAGAAGATTTTTGCTGAAGAGGAAGCAGAACAGACTTGGGATAAATCTGCAGGAAGCTCTCCTGAAAGCTACCGGGAAGATCTCTTCTTATTGGGTATGCATAGTCAGGAGACTCGGGACATAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

366

Amino Acids

40.43

Weight (kDa)

5.26

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 284 - 331 2.5e-12 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 899
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 1 cut(s) 180
AcsI RAATTY 2 cut(s) 870, 918
AcuI CTGAAG 3 cut(s) 78, 846, 1005
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 3 cut(s) 332, 827, 842
AflIII ACRYGT 1 cut(s) 924
AgsI TTSAA 3 cut(s) 150, 536, 784
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 837
AluBI AGCT 4 cut(s) 275, 361, 1026, 1038
AluI AGCT 4 cut(s) 275, 361, 1026, 1038
Alw26I GTCTC 3 cut(s) 583, 643, 1073
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 2 cut(s) 822, 1083
AoxI GGCC 3 cut(s) 140, 235, 425
ApoI RAATTY 2 cut(s) 870, 918
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspS9I GGNCC 3 cut(s) 133, 177, 719
AsuC2I CCSGG 1 cut(s) 1043
AsuHPI GGTGA 1 cut(s) 810
AvaI CYCGRG 2 cut(s) 822, 1083
AvaII GGWCC 3 cut(s) 133, 177, 719
AxyI CCTNAGG 1 cut(s) 137
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 737
BccI CCATC 2 cut(s) 529, 673
BciT130I CCWGG 1 cut(s) 839
BcnI CCSGG 1 cut(s) 1043
BcoDI GTCTC 3 cut(s) 583, 643, 1073
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 3 cut(s) 279, 408, 672
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 899
BglII AGATCT 1 cut(s) 1048
Bme1390I CCNGG 2 cut(s) 839, 1043
Bme18I GGWCC 3 cut(s) 133, 177, 719
BmeT110I CYCGRG 2 cut(s) 822, 1083
BmgT120I GGNCC 3 cut(s) 133, 177, 719
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 2 cut(s) 839, 1043
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 665
BmuI ACTGGG 1 cut(s) 620
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 1043
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 238, 837
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 827, 842
Bse1I ACTGG 1 cut(s) 626
Bse21I CCTNAGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 839
BseDI CCNNGG 2 cut(s) 238, 837
BseGI GGATG 2 cut(s) 191, 656
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 3 cut(s) 332, 827, 842
BseMII CTCAG 4 cut(s) 120, 151, 681, 981
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 2 cut(s) 117, 343
BsgI GTGCAG 1 cut(s) 949
BshFI GGCC 3 cut(s) 142, 237, 427
BsiHKCI CYCGRG 2 cut(s) 822, 1083
BsiSI CCGG 1 cut(s) 1042
BslFI GGGAC 2 cut(s) 379, 513
BslI CCNNNNNNNGG 3 cut(s) 332, 827, 842
BsmAI GTCTC 3 cut(s) 583, 643, 1073
BsmFI GGGAC 2 cut(s) 379, 513
BsnI GGCC 3 cut(s) 142, 237, 427
BsoBI CYCGRG 2 cut(s) 822, 1083
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 185, 1048
BspACI CCGC 1 cut(s) 180
BspANI GGCC 3 cut(s) 142, 237, 427
BspCNI CTCAG 4 cut(s) 119, 150, 682, 980
BspLI GGNNCC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 899
BsrBI CCGCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 2 cut(s) 238, 837
BssMI GATC 2 cut(s) 185, 1048
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 1 cut(s) 755
Bst6I CTCTTC 2 cut(s) 981, 1058
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 6 cut(s) 106, 137, 155, 173, 690, 967
BstF5I GGATG 2 cut(s) 191, 656
BstKTI GATC 2 cut(s) 188, 1051
BstMAI GTCTC 3 cut(s) 583, 643, 1073
BstMBI GATC 2 cut(s) 185, 1048
BstNI CCWGG 1 cut(s) 839
BstNSI RCATGY 1 cut(s) 928
BstPAI GACNNNNGTC 1 cut(s) 175
BstSCI CCNGG 2 cut(s) 837, 1041
BstSFI CTRYAG 1 cut(s) 1017
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 1048
Bsu36I CCTNAGG 1 cut(s) 137
BsuRI GGCC 3 cut(s) 142, 237, 427
BtsCI GGATG 2 cut(s) 191, 656
BtsIMutI CAGTG 1 cut(s) 569
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 133, 177, 719
Csp6I GTAC 1 cut(s) 629
CviAII CATG 4 cut(s) 388, 716, 854, 925
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 6 cut(s) 106, 137, 155, 173, 690, 967
DpnI GATC 2 cut(s) 187, 1050
DpnII GATC 2 cut(s) 185, 1048
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 981, 1058
EarI CTCTTC 2 cut(s) 981, 1058
Eco130I CCWWGG 1 cut(s) 238
Eco147I AGGCCT 2 cut(s) 142, 237
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 133, 177, 719
Eco57I CTGAAG 3 cut(s) 78, 846, 1005
Eco81I CCTNAGG 1 cut(s) 137
Eco88I CYCGRG 2 cut(s) 822, 1083
EcoRII CCWGG 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 2 cut(s) 658, 1071
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 391, 719, 857, 928
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 887, 919
FaqI GGGAC 2 cut(s) 379, 513
FatI CATG 4 cut(s) 387, 715, 853, 924
FokI GGATG 2 cut(s) 178, 643
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 3 cut(s) 279, 408, 672
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 3 cut(s) 142, 237, 427
HapII CCGG 1 cut(s) 1042
Hin1II CATG 4 cut(s) 391, 719, 857, 928
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 9 cut(s) 8, 98, 104, 512, 551, 563, 815, 879, 1081
HpaII CCGG 1 cut(s) 1042
HphI GGTGA 1 cut(s) 810
Hpy166II GTNNAC 2 cut(s) 620, 793
Hpy188I TCNGA 9 cut(s) 97, 103, 376, 436, 517, 526, 691, 865, 970
Hpy188III TCNNGA 6 cut(s) 59, 131, 808, 1031, 1076, 1085
Hpy8I GTNNAC 2 cut(s) 620, 793
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 870
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4V TGCA 6 cut(s) 586, 656, 894, 930, 1019, 1069
HpyF3I CTNAG 6 cut(s) 106, 137, 155, 173, 690, 967
Hsp92II CATG 4 cut(s) 391, 719, 857, 928
Kzo9I GATC 2 cut(s) 185, 1048
LmnI GCTCC 1 cut(s) 114
LweI GCATC 1 cut(s) 665
MaeI CTAG 3 cut(s) 279, 408, 672
MaeIII GTNAC 5 cut(s) 80, 749, 767, 884, 962
MalI GATC 2 cut(s) 187, 1050
MbiI CCGCTC 1 cut(s) 182
MboI GATC 2 cut(s) 185, 1048
MboII GAAGA 7 cut(s) 84, 742, 910, 985, 998, 1045, 1058
MflI RGATCY 1 cut(s) 1048
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 6 cut(s) 250, 315, 420, 708, 870, 918
MlyI GAGTC 3 cut(s) 98, 545, 1075
MmeI TCCRAC 1 cut(s) 528
Mph1103I ATGCAT 2 cut(s) 658, 1071
MseI TTAA 2 cut(s) 20, 609
MspI CCGG 1 cut(s) 1042
MspR9I CCNGG 2 cut(s) 839, 1043
MvaI CCWGG 1 cut(s) 839
NciI CCSGG 1 cut(s) 1043
NdeII GATC 2 cut(s) 185, 1048
NlaIII CATG 4 cut(s) 391, 719, 857, 928
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 3 cut(s) 749, 767, 962
NsiI ATGCAT 2 cut(s) 658, 1071
NspI RCATGY 1 cut(s) 928
PaeR7I CTCGAG 1 cut(s) 822
PaqCI CACCTGC 1 cut(s) 899
PceI AGGCCT 2 cut(s) 142, 237
PciI ACATGT 1 cut(s) 924
PfeI GAWTC 6 cut(s) 8, 98, 512, 563, 815, 879
PleI GAGTC 3 cut(s) 98, 545, 1075
PpsI GAGTC 3 cut(s) 98, 545, 1075
PscI ACATGT 1 cut(s) 924
PshAI GACNNNNGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 837
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 3 cut(s) 133, 177, 719
PspXI VCTCGAGB 1 cut(s) 822
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 1048
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SaqAI TTAA 2 cut(s) 20, 609
Sau3AI GATC 2 cut(s) 185, 1048
Sau96I GGNCC 3 cut(s) 133, 177, 719
SchI GAGTC 3 cut(s) 98, 545, 1075
ScrFI CCNGG 2 cut(s) 839, 1043
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 665
SfcI CTRYAG 1 cut(s) 1017
Sfr274I CTCGAG 1 cut(s) 822
SinI GGWCC 3 cut(s) 133, 177, 719
SlaI CTCGAG 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 6 cut(s) 250, 315, 420, 708, 870, 918
SseBI AGGCCT 2 cut(s) 142, 237
SsiI CCGC 1 cut(s) 180
SspMI CTAG 3 cut(s) 279, 408, 672
StuI AGGCCT 2 cut(s) 142, 237
StyD4I CCNGG 2 cut(s) 837, 1041
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 755
TaqI TCGA 5 cut(s) 184, 299, 322, 807, 823
TasI AATT 6 cut(s) 250, 315, 420, 708, 870, 918
TfiI GAWTC 6 cut(s) 8, 98, 512, 563, 815, 879
Tru1I TTAA 2 cut(s) 20, 609
Tru9I TTAA 2 cut(s) 20, 609
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 3 cut(s) 749, 767, 962
Tsp45I GTSAC 3 cut(s) 749, 767, 962
TspDTI ATGAA 5 cut(s) 279, 285, 404, 474, 882
TspRI CASTG 1 cut(s) 576
VpaK11BI GGWCC 3 cut(s) 133, 177, 719
XapI RAATTY 2 cut(s) 870, 918
XceI RCATGY 1 cut(s) 928
XhoI CTCGAG 1 cut(s) 822
XspI CTAG 3 cut(s) 279, 408, 672
Zsp2I ATGCAT 2 cut(s) 658, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.