Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005256

Physical Location & Seq

Genomic Coordinates Reverse (-)

53033269 .. 53035862

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGATTCTAATAGTTTAAGCCTGAAACACACAAGTAGCATGCTTTTCAGTATTCCTGATTTCTTTGTAGGGTTTGGTAACAAAGGTTCTTCAGATTCTGACTCAGTTAGGAGCCCTACATCTCCTCTGGACCTCAGGCCTTTTTCAAATCTTAGCAACCCATTTAGACTTAGGTCCGCTCGATCATCATCCCACAATGGAAATCACAAGAAATGGGATTGTAGGAAAGCAGGCCTTGGCATTGTCAATTTCCTTGTTGATGAAACCAAAGCTACTAGTGAAGTTCTTGGTTCATCGAAGAGGAAAACCATAATTTTTCGACCACAGGTGGGGAAAAACAACTCTCACTCCTCAAAGCTCTGTTCTGGTTCAGATGATTATTCCATGAAGTCCCAATCTTTACCTAGAAACTACATAATTAGGCCACTTTCTGAAACCATATCTCTCAATCCCCAACTCAAACCAGATAAAGTGAATGTTTCATCTGGGTTTGTGGGACTTCCTTTGGAATCTGAACCATCTGAAAACATTGAACCATTTTTGTTGGACTCCAGCAGGGATTCCTCACTGATTGTCTCTATGCAAGGAGAAAGTTCGTTGGGTTTTAAACCAAGTTCACTTCCAGTACCCATTGTCTCTAACCCTCAATATGCATCCTCTATCCCTGCTAGAGAGATGGAACTTTCTGAGGACTATACCTGTATAATTTCTCATGGTCCAAACCCGAAGACTACTCATATTTTTTGTGACTGTATATTGGAATGTCACACAAAAGATTTAAACAATGTTGATAAAGAAATAGTCGAGATAGAATCACCTCGAGTGGGTCAGCACCAGGAGGGATTGGCACATGACCCTTCAGATGAAATTTTGAGATTCTGTTACACCTGCAAGAAGAACTTGGTAGGAGAGGAAATTTACATGTGCAGGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

313

Amino Acids

34.61

Weight (kDa)

6.32

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79970 AT1G79970 AT1G79970
fragaria_vesca	FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090 FvH4_6g31090
prunus_persica	Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1 Prupe.3G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137791
rosa_laevigata	RLG00000019676
rosa_multiflora	Rmu_sc0025302.1_g000001 Rmu_sc0041296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106840
rosa_rugosa	Rorug02G0345800 Rorug02G0345900 Rorug02G0346000
rosa_samantha	Rh2AG392800 Rh2BG400500 Rh2CG379500 Rh2DG415400
rosa_wichuraiana	Rw2G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	899
Acc36I	ACCTGC	2 cut(s)	899, 921
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	870, 918
AcuI	CTGAAG	2 cut(s)	78, 846
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	332, 827
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	2 cut(s)	150, 536
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	837
AluBI	AGCT	2 cut(s)	275, 361
AluI	AGCT	2 cut(s)	275, 361
Alw26I	GTCTC	2 cut(s)	583, 643
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	822
AoxI	GGCC	3 cut(s)	140, 235, 425
ApoI	RAATTY	2 cut(s)	870, 918
AspS9I	GGNCC	3 cut(s)	133, 177, 719
AsuHPI	GGTGA	1 cut(s)	810
AvaI	CYCGRG	1 cut(s)	822
AvaII	GGWCC	3 cut(s)	133, 177, 719
AxyI	CCTNAGG	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	737
BccI	CCATC	2 cut(s)	529, 673
BciT130I	CCWGG	1 cut(s)	839
BcoDI	GTCTC	2 cut(s)	583, 643
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	279, 408, 672
BfuAI	ACCTGC	2 cut(s)	899, 921
Bme1390I	CCNGG	1 cut(s)	839
Bme18I	GGWCC	3 cut(s)	133, 177, 719
BmeT110I	CYCGRG	1 cut(s)	822
BmgT120I	GGNCC	3 cut(s)	133, 177, 719
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	839
BmsI	GCATC	1 cut(s)	665
BoxI	GACNNNNGTC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 827
Bse1I	ACTGG	1 cut(s)	626
Bse21I	CCTNAGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	839
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	191, 656
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	332, 827
BseMII	CTCAG	3 cut(s)	120, 151, 681
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	2 cut(s)	117, 343
BshFI	GGCC	3 cut(s)	142, 237, 427
BsiHKCI	CYCGRG	1 cut(s)	822
BslFI	GGGAC	2 cut(s)	379, 513
BslI	CCNNNNNNNGG	2 cut(s)	332, 827
BsmAI	GTCTC	2 cut(s)	583, 643
BsmFI	GGGAC	2 cut(s)	379, 513
BsnI	GGCC	3 cut(s)	142, 237, 427
BsoBI	CYCGRG	1 cut(s)	822
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	142, 237, 427
BspCNI	CTCAG	3 cut(s)	119, 150, 682
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	2 cut(s)	899, 921
BsrBI	CCGCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	839
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	44, 235
BstDEI	CTNAG	5 cut(s)	106, 137, 155, 173, 690
BstF5I	GGATG	2 cut(s)	191, 656
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	583, 643
BstMBI	GATC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	839
BstNSI	RCATGY	2 cut(s)	46, 928
BstPAI	GACNNNNGTC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	837
BstV2I	GAAGAC	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	142, 237, 427
BtsCI	GGATG	2 cut(s)	191, 656
BtsIMutI	CAGTG	1 cut(s)	569
BveI	ACCTGC	2 cut(s)	899, 921
Cac8I	GCNNGC	2 cut(s)	44, 235
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	133, 177, 719
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	5 cut(s)	43, 388, 716, 854, 925
CviJI	RGCY	8 cut(s)	5, 24, 117, 142, 237, 275, 361, 427
CviKI_1	RGCY	8 cut(s)	5, 24, 117, 142, 237, 275, 361, 427
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	5 cut(s)	106, 137, 155, 173, 690
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DraI	TTTAAA	2 cut(s)	610, 783
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	2 cut(s)	142, 237
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	3 cut(s)	133, 177, 719
Eco57I	CTGAAG	2 cut(s)	78, 846
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	822
EcoRII	CCWGG	1 cut(s)	837
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	5 cut(s)	46, 391, 719, 857, 928
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 887, 919
FaqI	GGGAC	2 cut(s)	379, 513
FatI	CATG	5 cut(s)	42, 387, 715, 853, 924
FokI	GGATG	2 cut(s)	178, 643
FriOI	GRGCYC	1 cut(s)	119
FspBI	CTAG	3 cut(s)	279, 408, 672
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	3 cut(s)	142, 237, 427
Hin1II	CATG	5 cut(s)	46, 391, 719, 857, 928
HinfI	GANTC	8 cut(s)	8, 98, 104, 512, 551, 563, 815, 879
HphI	GGTGA	1 cut(s)	810
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	8 cut(s)	97, 103, 376, 436, 517, 526, 691, 865
Hpy188III	TCNNGA	3 cut(s)	59, 131, 808
Hpy8I	GTNNAC	1 cut(s)	620
HpyAV	CCTTC	1 cut(s)	870
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4V	TGCA	4 cut(s)	586, 656, 894, 930
HpyF3I	CTNAG	5 cut(s)	106, 137, 155, 173, 690
Hsp92II	CATG	5 cut(s)	46, 391, 719, 857, 928
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	114
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	279, 408, 672
MaeIII	GTNAC	4 cut(s)	80, 749, 767, 884
MalI	GATC	1 cut(s)	187
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	1 cut(s)	185
MboII	GAAGA	4 cut(s)	84, 313, 742, 910
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
MlyI	GAGTC	2 cut(s)	98, 545
MmeI	TCCRAC	1 cut(s)	528
Mph1103I	ATGCAT	1 cut(s)	658
MseI	TTAA	3 cut(s)	20, 609, 782
MspR9I	CCNGG	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	839
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	46, 391, 719, 857, 928
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	2 cut(s)	749, 767
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	2 cut(s)	46, 928
PaeI	GCATGC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	899
PceI	AGGCCT	2 cut(s)	142, 237
PciI	ACATGT	1 cut(s)	924
PfeI	GAWTC	6 cut(s)	8, 98, 512, 563, 815, 879
PleI	GAGTC	2 cut(s)	98, 545
PpsI	GAGTC	2 cut(s)	98, 545
PscI	ACATGT	1 cut(s)	924
PshAI	GACNNNNGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	837
PspGI	CCWGG	1 cut(s)	837
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	3 cut(s)	133, 177, 719
PspXI	VCTCGAGB	1 cut(s)	822
PsrI	GAACNNNNNNTAC	2 cut(s)	73, 105
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	20, 609, 782
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	3 cut(s)	133, 177, 719
SchI	GAGTC	2 cut(s)	98, 545
ScrFI	CCNGG	1 cut(s)	839
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	822
SinI	GGWCC	3 cut(s)	133, 177, 719
SlaI	CTCGAG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
SpeI	ACTAGT	1 cut(s)	278
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
SseBI	AGGCCT	2 cut(s)	142, 237
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	3 cut(s)	279, 408, 672
StuI	AGGCCT	2 cut(s)	142, 237
StyD4I	CCNGG	1 cut(s)	837
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	755
TaqI	TCGA	5 cut(s)	184, 299, 322, 807, 823
TasI	AATT	6 cut(s)	250, 315, 420, 708, 870, 918
TfiI	GAWTC	6 cut(s)	8, 98, 512, 563, 815, 879
Tru1I	TTAA	3 cut(s)	20, 609, 782
Tru9I	TTAA	3 cut(s)	20, 609, 782
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	749, 767
Tsp45I	GTSAC	2 cut(s)	749, 767
TspDTI	ATGAA	5 cut(s)	279, 285, 404, 474, 882
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	3 cut(s)	133, 177, 719
XapI	RAATTY	2 cut(s)	870, 918
XceI	RCATGY	2 cut(s)	46, 928
XhoI	CTCGAG	1 cut(s)	822
XspI	CTAG	3 cut(s)	279, 408, 672
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.