FvH4_6g31090

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005256
Physical Location & Seq
Reverse (-)
24261834 .. 24264745
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31090.t8

Sequence Viewer

Length: 1098 bp
ATGGTTGATTCTAGTAGTTTAAAGCTGAAACACACTAGTAGCATACTTTTCAGTATTCCTGATTTCTTCGTAGGGTTTGGTAATAAAGGTTCTTTAGATTCAGACTCAGTTAGGAGCCCTACATCTCCTCTGGACCTCAGGCCTTTTTCAAATCTTAGCAACCCATTTAGACTTCGGTCTGCTAGATCATTATCTCAAAATGGAAATCATAAGATATGGGATTGTAGGAAAGCAGGCCTTGGCATCGTCAATTCCCTTGTTGATGAAACCAAAGCTACTAGTGAAGTTCTTGGTTCATCGAAGAGGAAGACCATAATTTTTCGACCACAGTTGGAAAAAATCAACCCTCATTCCTCAAAGCTTCGTTCTGGTTCAAAGGATTATTTCATGAAATCCCGATCTTTACCTAGAAACTATATAATTAGGCCACTTTCTGAAACCATATCTCTCAGGCTCCAACTCAAACCAGATAAGGTGGATGTTTCCTCTGGGAGTGTGGGACTTCTTTTAGAATCTGAACCATCTGAAAACATTGCACCATTTTTGTTGGACTCCAGCAGGGCTTCCTCACAAATTGTCTCTATGCAAGGAGAAAATTCGTTGGGTTTTAGACCTAGTTCACTTCCAGCACCAATTGTCTCTAACCCTCAATCTGCATCCTCTATCCCTGCTAGAGAGATGGAACTCTCTGAGGACTATACCTGTATAATTTCTCATGGTCCAAACCCGAAGACCACTCATATATTTTGTGACTGCATATTGGAATGTCACACAAAAGATTTAAACAATGTTGACAAAGAAACAGTCGAGATAAAAGCACCTCAACTAGGTAAGCATCAGGAGGGATTGACACATGACCCTTCAGATGAACTTTTGGGATCCTGTTACACCTGCCAGAAGAACTTGGAAGGAGAGGAAATTTACATGTGCAGAAGTGAGAAAGCATTTTGTAGTTTTGATTGTCACTCAGATAAGATTTTTGCTGAAGAGGAAGCAGAAGGTACTTGGGATAAGTCTGCAGGAAGCTCTCCTAAAAGCTACCAGGAAGATCTCTTCTTATTGGGTATGCATAGTCATGAGACTCCGGACATAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

366

Amino Acids

40.39

Weight (kDa)

5.82

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 285 - 331 6.3e-12 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 899
AccIII TCCGGA 1 cut(s) 1084
AclWI GGATC 2 cut(s) 873, 886
AcsI RAATTY 2 cut(s) 595, 918
AcuI CTGAAG 2 cut(s) 846, 1005
AfaI GTAC 1 cut(s) 1003
AfiI CCNNNNNNNGG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 924
AgsI TTSAA 2 cut(s) 150, 375
AhlI ACTAGT 2 cut(s) 35, 278
AjnI CCWGG 1 cut(s) 1041
AluBI AGCT 5 cut(s) 25, 275, 361, 1026, 1038
AluI AGCT 5 cut(s) 25, 275, 361, 1026, 1038
Alw26I GTCTC 3 cut(s) 583, 643, 1073
AlwI GGATC 2 cut(s) 873, 886
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 3 cut(s) 140, 235, 425
ApoI RAATTY 2 cut(s) 595, 918
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspS9I GGNCC 2 cut(s) 133, 719
AvaII GGWCC 2 cut(s) 133, 719
AxyI CCTNAGG 1 cut(s) 137
BamHI GGATCC 1 cut(s) 878
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 314, 737
BccI CCATC 2 cut(s) 529, 673
BciT130I CCWGG 1 cut(s) 1043
BcoDI GTCTC 3 cut(s) 583, 643, 1073
BcuI ACTAGT 2 cut(s) 35, 278
BfaI CTAG 8 cut(s) 12, 36, 183, 279, 408, 615, 672, 827
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 899
BglII AGATCT 1 cut(s) 1048
Bme1390I CCNGG 1 cut(s) 1043
Bme18I GGWCC 2 cut(s) 133, 719
BmgT120I GGNCC 2 cut(s) 133, 719
BmiI GGNNCC 3 cut(s) 116, 455, 880
BmrFI CCNGG 1 cut(s) 1043
BmsI GCATC 3 cut(s) 252, 665, 844
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 2 cut(s) 314, 737
BpmI CTGGAG 1 cut(s) 538
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 1084
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse21I CCTNAGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 1084
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 484, 656
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 5 cut(s) 120, 151, 463, 681, 981
BseRI GAGGAG 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 949
BshFI GGCC 3 cut(s) 142, 237, 427
BsiSI CCGG 1 cut(s) 1085
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 3 cut(s) 583, 643, 1073
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 3 cut(s) 142, 237, 427
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 1084
Bsp143I GATC 4 cut(s) 185, 398, 878, 1048
BspANI GGCC 3 cut(s) 142, 237, 427
BspCNI CTCAG 5 cut(s) 119, 150, 462, 682, 980
BspEI TCCGGA 1 cut(s) 1084
BspHI TCATGA 2 cut(s) 387, 1075
BspLI GGNNCC 3 cut(s) 116, 455, 880
BspMAI CTGCAG 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 2 cut(s) 873, 886
BsrDI GCAATG 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 4 cut(s) 185, 398, 878, 1048
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 2 cut(s) 330, 805
Bst6I CTCTTC 3 cut(s) 296, 981, 1058
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 6 cut(s) 106, 137, 155, 449, 690, 967
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 2 cut(s) 484, 656
BstKTI GATC 4 cut(s) 188, 401, 881, 1051
BstMAI GTCTC 3 cut(s) 583, 643, 1073
BstMBI GATC 4 cut(s) 185, 398, 878, 1048
BstNI CCWGG 1 cut(s) 1043
BstNSI RCATGY 1 cut(s) 928
BstPAI GACNNNNGTC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 1041
BstSFI CTRYAG 1 cut(s) 1017
BstV2I GAAGAC 2 cut(s) 314, 737
BstX2I RGATCY 2 cut(s) 878, 1048
BstYI RGATCY 2 cut(s) 878, 1048
Bsu36I CCTNAGG 1 cut(s) 137
BsuRI GGCC 3 cut(s) 142, 237, 427
BtsCI GGATG 2 cut(s) 484, 656
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 1 cut(s) 235
CciI TCATGA 2 cut(s) 387, 1075
Cfr13I GGNCC 2 cut(s) 133, 719
Csp6I GTAC 1 cut(s) 1002
CviAII CATG 5 cut(s) 388, 716, 854, 925, 1076
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 6 cut(s) 106, 137, 155, 449, 690, 967
DpnI GATC 4 cut(s) 187, 400, 880, 1050
DpnII GATC 4 cut(s) 185, 398, 878, 1048
DraI TTTAAA 2 cut(s) 21, 783
Eam1104I CTCTTC 3 cut(s) 296, 981, 1058
EarI CTCTTC 3 cut(s) 296, 981, 1058
Eco130I CCWWGG 1 cut(s) 238
Eco147I AGGCCT 2 cut(s) 142, 237
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 133, 719
Eco57I CTGAAG 2 cut(s) 846, 1005
Eco81I CCTNAGG 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 5 cut(s) 391, 719, 857, 928, 1079
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 513
FatI CATG 5 cut(s) 387, 715, 853, 924, 1075
FokI GGATG 2 cut(s) 491, 643
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 8 cut(s) 12, 36, 183, 279, 408, 615, 672, 827
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 3 cut(s) 142, 237, 427
HapII CCGG 1 cut(s) 1085
Hin1II CATG 5 cut(s) 391, 719, 857, 928, 1079
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 8, 98, 104, 512, 551, 1081
HpaII CCGG 1 cut(s) 1085
Hpy166II GTNNAC 2 cut(s) 620, 793
Hpy188I TCNGA 7 cut(s) 103, 436, 517, 526, 691, 865, 970
Hpy188III TCNNGA 8 cut(s) 59, 131, 388, 396, 808, 839, 1076, 1085
Hpy8I GTNNAC 2 cut(s) 620, 793
HpyAV CCTTC 3 cut(s) 870, 902, 992
HpyCH4III ACNGT 2 cut(s) 330, 805
HpyCH4V TGCA 7 cut(s) 536, 586, 656, 756, 930, 1019, 1069
HpyF3I CTNAG 6 cut(s) 106, 137, 155, 449, 690, 967
Hsp92II CATG 5 cut(s) 391, 719, 857, 928, 1079
Kpn2I TCCGGA 1 cut(s) 1084
Kzo9I GATC 4 cut(s) 185, 398, 878, 1048
LmnI GCTCC 2 cut(s) 114, 459
LweI GCATC 3 cut(s) 252, 665, 844
MaeI CTAG 8 cut(s) 12, 36, 183, 279, 408, 615, 672, 827
MaeIII GTNAC 4 cut(s) 749, 767, 884, 962
MalI GATC 4 cut(s) 187, 400, 880, 1050
MboI GATC 4 cut(s) 185, 398, 878, 1048
MboII GAAGA 8 cut(s) 58, 313, 319, 742, 910, 998, 1045, 1058
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 2 cut(s) 878, 1048
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 8 cut(s) 250, 315, 420, 573, 595, 633, 708, 918
MlyI GAGTC 3 cut(s) 98, 545, 1075
MmeI TCCRAC 3 cut(s) 312, 481, 528
Mph1103I ATGCAT 1 cut(s) 1071
MroI TCCGGA 1 cut(s) 1084
MseI TTAA 2 cut(s) 20, 782
MslI CAYNNNNRTG 1 cut(s) 1074
MspI CCGG 1 cut(s) 1085
MspR9I CCNGG 1 cut(s) 1043
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 1 cut(s) 1043
NdeII GATC 4 cut(s) 185, 398, 878, 1048
NlaIII CATG 5 cut(s) 391, 719, 857, 928, 1079
NlaIV GGNNCC 3 cut(s) 116, 455, 880
NmuCI GTSAC 3 cut(s) 749, 767, 962
NsiI ATGCAT 1 cut(s) 1071
NspI RCATGY 1 cut(s) 928
PagI TCATGA 2 cut(s) 387, 1075
PaqCI CACCTGC 1 cut(s) 899
PceI AGGCCT 2 cut(s) 142, 237
PciI ACATGT 1 cut(s) 924
PfeI GAWTC 3 cut(s) 8, 98, 512
PleI GAGTC 3 cut(s) 98, 545, 1075
PpsI GAGTC 3 cut(s) 98, 545, 1075
PscI ACATGT 1 cut(s) 924
PshAI GACNNNNGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 1041
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 3 cut(s) 116, 455, 880
PspPI GGNCC 2 cut(s) 133, 719
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstI CTGCAG 1 cut(s) 1021
PsuI RGATCY 2 cut(s) 878, 1048
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
RseI CAYNNNNRTG 1 cut(s) 1074
SaqAI TTAA 2 cut(s) 20, 782
Sau3AI GATC 4 cut(s) 185, 398, 878, 1048
Sau96I GGNCC 2 cut(s) 133, 719
SchI GAGTC 3 cut(s) 98, 545, 1075
ScrFI CCNGG 1 cut(s) 1043
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 3 cut(s) 252, 665, 844
SfcI CTRYAG 1 cut(s) 1017
SinI GGWCC 2 cut(s) 133, 719
SmiMI CAYNNNNRTG 1 cut(s) 1074
SpeI ACTAGT 2 cut(s) 35, 278
Sse9I AATT 8 cut(s) 250, 315, 420, 573, 595, 633, 708, 918
SseBI AGGCCT 2 cut(s) 142, 237
SspMI CTAG 8 cut(s) 12, 36, 183, 279, 408, 615, 672, 827
StuI AGGCCT 2 cut(s) 142, 237
StyD4I CCNGG 1 cut(s) 1041
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 330, 805
TaqI TCGA 3 cut(s) 299, 322, 807
TaqII GACCGA 1 cut(s) 165
TasI AATT 8 cut(s) 250, 315, 420, 573, 595, 633, 708, 918
TfiI GAWTC 3 cut(s) 8, 98, 512
Tru1I TTAA 2 cut(s) 20, 782
Tru9I TTAA 2 cut(s) 20, 782
TseFI GTSAC 3 cut(s) 749, 767, 962
Tsp45I GTSAC 3 cut(s) 749, 767, 962
TspDTI ATGAA 5 cut(s) 279, 285, 376, 404, 882
VpaK11BI GGWCC 2 cut(s) 133, 719
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 2 cut(s) 595, 918
XceI RCATGY 1 cut(s) 928
XspI CTAG 8 cut(s) 12, 36, 183, 279, 408, 615, 672, 827
Zsp2I ATGCAT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.