AT1G80120

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014447
Physical Location & Seq
Forward (+)
30138818 .. 30140360
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80120.1

Sequence Viewer

Length: 633 bp
ATGAAGGGGGGTTTGCTTGTGGACGATGAATTTATACACGGAGAAGAAAGGAGCCTGACTGTTCGGAAAACATCTCTGTTTTTCGCCGGCGATGGTTTCACAGTTTACGACTGCAAGGGAAGTTTGGTGTTTCGGGTTGACTCTTACGGTGGTCCCAACACCCGCGACACCGACGAGGTTGTCCTCATGGACGCTCACGGCCGTTGTCTCCTCACCCTCCGACGAAAGAGGCCGAGTTTGCGACGGAGATGGGAGGGGTATCTCGGGGAGAGATCGGACGGCCAGAAACCGATCTTCGGGGTAAGGAGATCTTCGATAATCGGGAGGAACAGTGTGACGGTGGAGGTGTACGGGGACTACCAGTGCAGCGAGTACCTGATAGAAGGTAGTTTCGGGGCAAGGAACTGCACGGTGGTGGAGGCGGAGACGAGGCGGAAGGTGGCGGAGATAAGGCGCAAAGTGGATGCGTCAACGAACGTGATGCTTGGGAAAGACGTTTTCTCGTTGAACGTGAAGCCCGGTTTTGATGGAGCCTTTGCAATGGGATTGGTTCTTGTGCTTGATCAAATCTACGGCGACGATCTCCTTGAGGTTGGTGAGGAACAGGTGCACCCTTCCGCAGAAGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

210

Amino Acids

23.45

Weight (kDa)

5.52

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 18 - 188 3.5e-39 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccII CGCG 1 cut(s) 165
AciI CCGC 5 cut(s) 163, 422, 433, 443, 618
AcoI YGGCCR 2 cut(s) 199, 280
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 350, 374
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 508
AleI CACNNNNGTG 1 cut(s) 413
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 2 cut(s) 212, 419
Alw44I GTGCAC 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 3 cut(s) 199, 230, 280
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 205, 608
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 378
BccI CCATC 3 cut(s) 86, 243, 521
BceAI ACGGC 4 cut(s) 186, 214, 295, 589
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 212, 419
BglII AGATCT 2 cut(s) 308, 625
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 53, 154, 532
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 454, 471
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 546
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 546
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 612
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 2 cut(s) 385, 391
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 3 cut(s) 201, 232, 282
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 87, 519
BslFI GGGAC 2 cut(s) 138, 368
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 212, 419
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 2 cut(s) 138, 368
BsnI GGCC 3 cut(s) 201, 232, 282
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 6 cut(s) 272, 291, 308, 562, 580, 625
BspACI CCGC 5 cut(s) 163, 422, 433, 443, 618
BspANI GGCC 3 cut(s) 201, 232, 282
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 53, 154, 532
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 6 cut(s) 272, 291, 308, 562, 580, 625
Bst4CI ACNGT 6 cut(s) 61, 103, 149, 332, 340, 412
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 6 cut(s) 275, 294, 311, 565, 583, 628
BstMAI GTCTC 2 cut(s) 212, 419
BstMBI GATC 6 cut(s) 272, 291, 308, 562, 580, 625
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 308, 625
BstYI RGATCY 2 cut(s) 308, 625
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 3 cut(s) 201, 232, 282
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 337, 368
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 2 cut(s) 200, 456
Csp6I GTAC 2 cut(s) 349, 373
CviAII CATG 1 cut(s) 187
CviJI RGCY 6 cut(s) 54, 201, 232, 282, 517, 533
CviKI_1 RGCY 6 cut(s) 54, 201, 232, 282, 517, 533
CviQI GTAC 2 cut(s) 349, 373
DpnI GATC 6 cut(s) 274, 293, 310, 564, 582, 627
DpnII GATC 6 cut(s) 272, 291, 308, 562, 580, 625
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 199, 280
EagI CGGCCG 1 cut(s) 199
EciI GGCGGA 3 cut(s) 437, 448, 458
EclXI CGGCCG 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 1 cut(s) 190
FaiI YATR 2 cut(s) 35, 188
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 2 cut(s) 138, 368
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 1 cut(s) 367
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 367
HaeIII GGCC 3 cut(s) 201, 232, 282
HapII CCGG 2 cut(s) 87, 519
HgaI GACGC 2 cut(s) 200, 456
HhaI GCGC 1 cut(s) 456
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 2 cut(s) 139, 471
HindII GTYRAC 2 cut(s) 139, 471
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 87, 519
HphI GGTGA 2 cut(s) 205, 608
Hpy166II GTNNAC 6 cut(s) 22, 106, 139, 349, 471, 610
Hpy188I TCNGA 4 cut(s) 66, 221, 277, 632
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 6 cut(s) 22, 106, 139, 349, 471, 610
Hpy99I CGWCG 4 cut(s) 176, 225, 246, 581
HpyAV CCTTC 3 cut(s) 377, 430, 624
HpyCH4III ACNGT 6 cut(s) 61, 103, 149, 332, 340, 412
HpyCH4IV ACGT 3 cut(s) 477, 495, 510
HpyCH4V TGCA 5 cut(s) 114, 366, 408, 539, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpySE526I ACGT 3 cut(s) 477, 495, 510
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 454
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 272, 291, 308, 562, 580, 625
LmnI GCTCC 2 cut(s) 51, 530
LpnPI CCDG 7 cut(s) 68, 100, 296, 374, 389, 532, 590
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 2 cut(s) 454, 471
MaeII ACGT 3 cut(s) 477, 495, 510
MaeIII GTNAC 1 cut(s) 334
MalI GATC 6 cut(s) 274, 293, 310, 564, 582, 627
MboI GATC 6 cut(s) 272, 291, 308, 562, 580, 625
MboII GAAGA 3 cut(s) 56, 286, 303
MflI RGATCY 2 cut(s) 308, 625
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 244
MreI CGCCGGCG 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 2 cut(s) 87, 519
MspR9I CCNGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 238
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 519
NdeII GATC 6 cut(s) 272, 291, 308, 562, 580, 625
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 3 cut(s) 53, 154, 532
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 53, 154, 532
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 2 cut(s) 308, 625
RsaI GTAC 2 cut(s) 350, 374
RsaNI GTAC 2 cut(s) 349, 373
RseI CAYNNNNRTG 1 cut(s) 413
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 6 cut(s) 272, 291, 308, 562, 580, 625
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 2 cut(s) 454, 471
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 1 cut(s) 29
SsiI CCGC 5 cut(s) 163, 422, 433, 443, 618
StyD4I CCNGG 1 cut(s) 517
TaaI ACNGT 6 cut(s) 61, 103, 149, 332, 340, 412
TaiI ACGT 3 cut(s) 480, 498, 513
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 29
TscAI CASTG 2 cut(s) 337, 368
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 17, 42
TspGWI ACGGA 2 cut(s) 54, 259
TspRI CASTG 2 cut(s) 337, 368
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.