Prupe.3G086900_v2.0.a1

LURP-one-related 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014447
Physical Location & Seq
Reverse (-)
6436383 .. 6437553
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G086900.1

Sequence Viewer

Length: 636 bp
ATGAAAGACGGGACACTTGTGGAATCTGAGTTCGTGTATGAACAAGAGACCCATCTCACCGTTTCCAAAACCTCCGTCTTCTTCGCCGGCGACGGCTTCATTGTCTATGGCTGCAAAGGCGAGGTCGTCCTCCGAGTCGACTCGTACGCCCAGGACGCGCGTGACAGCTGCGAGCTCGTTCTCATGGACCCCAACGGCCGCTGCCTCCTCACTGTTCGCCGCAAGCGACCGAGTCTGCATCAACGGTGGGAAGGGTTTGTGGGGGAGCGAACGGACGGCCAGAAGCACATCTTCAGCGTGCGGAGATCTTCCATGATCGGAAGGTCCACAGTGACCGTGGAGGTTTTGGGAGACCCAGGCGAGGAGTACCAGATCGAGGGCTCATTCTTGCAGCGGTCCTGCACGATCTTCGACGCGGAGAAGAATTTAGTGGCTGAGATTAAACGCAAAGTTGACGCCTCCACGCACACGATGCTCGGGAAGGACGTCTTCGCTCTCTGCGTCAAGCCCGGCTTCGACGCCGCGTTTGCCATGGGATTGGTGCTCGTTCTCGATCAGATCAACGCTGACGATCAAATCAACGTTGATGATTATGGTGATGATGGGGTTGTGGTGGAACCCACTGCAGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

4.73

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 138
AccII CGCG 4 cut(s) 158, 160, 416, 524
AciI CCGC 6 cut(s) 199, 220, 301, 394, 416, 522
AclI AACGTT 1 cut(s) 582
AcoI YGGCCR 2 cut(s) 196, 277
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 277
AcyI GRCGYC 3 cut(s) 456, 486, 519
AfaI GTAC 2 cut(s) 146, 368
AfiI CCNNNNNNNGG 2 cut(s) 361, 376
AjnI CCWGG 2 cut(s) 150, 355
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 168, 175
AluI AGCT 2 cut(s) 168, 175
Alw21I GWGCWC 2 cut(s) 177, 546
Alw26I GTCTC 2 cut(s) 41, 345
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 2 cut(s) 196, 277
ApeKI GCWGC 4 cut(s) 111, 168, 201, 391
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 6 cut(s) 60, 92, 108, 140, 509, 541
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 187, 324, 396
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 2 cut(s) 49, 608
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 3 cut(s) 187, 324, 396
BanII GRGCYC 2 cut(s) 177, 383
BbsI GAAGAC 2 cut(s) 70, 481
Bbv12I GWGCWC 2 cut(s) 177, 546
BbvI GCAGC 4 cut(s) 98, 155, 188, 403
BccI CCATC 2 cut(s) 60, 596
BceAI ACGGC 3 cut(s) 109, 211, 292
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 2 cut(s) 152, 357
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 41, 345
BfmI CTRYAG 1 cut(s) 624
BglII AGATCT 1 cut(s) 305
BisI GCNGC 7 cut(s) 112, 169, 199, 202, 220, 392, 522
BlsI GCNGC 7 cut(s) 113, 170, 200, 203, 221, 393, 523
Bme1390I CCNGG 3 cut(s) 152, 357, 510
Bme18I GGWCC 3 cut(s) 187, 324, 396
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 3 cut(s) 187, 324, 396
BmiI GGNNCC 2 cut(s) 189, 618
BmrFI CCNGG 3 cut(s) 152, 357, 510
BmsI GCATC 2 cut(s) 247, 462
BpiI GAAGAC 2 cut(s) 70, 481
BpuMI CCSGG 1 cut(s) 510
BsaHI GRCGYC 3 cut(s) 456, 486, 519
BsaI GGTCTC 2 cut(s) 41, 345
BsaJI CCNNGG 4 cut(s) 150, 336, 355, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 376
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 2 cut(s) 152, 357
BseDI CCNNGG 4 cut(s) 150, 336, 355, 531
BseLI CCNNNNNNNGG 2 cut(s) 361, 376
BseMII CTCAG 2 cut(s) 18, 426
BseRI GAGGAG 2 cut(s) 197, 377
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 4 cut(s) 98, 155, 188, 403
BsgI GTGCAG 1 cut(s) 385
Bsh1236I CGCG 4 cut(s) 158, 160, 416, 524
Bsh1285I CGRYCG 2 cut(s) 199, 230
BshFI GGCC 2 cut(s) 198, 279
BsiEI CGRYCG 2 cut(s) 199, 230
BsiHKAI GWGCWC 2 cut(s) 177, 546
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 2 cut(s) 87, 510
BsiWI CGTACG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 361, 376
BsmAI GTCTC 2 cut(s) 41, 345
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 2 cut(s) 198, 279
Bso31I GGTCTC 2 cut(s) 41, 345
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 177, 383, 546
Bsp143I GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 6 cut(s) 199, 220, 301, 394, 416, 522
BspANI GGCC 2 cut(s) 198, 279
BspCNI CTCAG 2 cut(s) 19, 427
BspFNI CGCG 4 cut(s) 158, 160, 416, 524
BspLI GGNNCC 2 cut(s) 189, 618
BspMAI CTGCAG 1 cut(s) 628
BspTNI GGTCTC 2 cut(s) 41, 345
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 150, 336, 355, 531
BssMI GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
BssNI GRCGYC 3 cut(s) 456, 486, 519
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 152, 357
Bst4CI ACNGT 5 cut(s) 61, 214, 246, 331, 337
BstACI GRCGYC 3 cut(s) 456, 486, 519
BstAPI GCANNNNNTGC 1 cut(s) 472
BstC8I GCNNGC 4 cut(s) 88, 173, 224, 299
BstDEI CTNAG 2 cut(s) 27, 435
BstDSI CCRYGG 2 cut(s) 336, 531
BstFNI CGCG 4 cut(s) 158, 160, 416, 524
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 7 cut(s) 308, 318, 375, 408, 556, 561, 574
BstMAI GTCTC 2 cut(s) 41, 345
BstMBI GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
BstMCI CGRYCG 2 cut(s) 199, 230
BstMWI GCNNNNNNNGC 4 cut(s) 117, 155, 472, 527
BstNI CCWGG 2 cut(s) 152, 357
BstSCI CCNGG 3 cut(s) 150, 355, 508
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 4 cut(s) 158, 160, 416, 524
BstV1I GCAGC 4 cut(s) 98, 155, 188, 403
BstV2I GAAGAC 2 cut(s) 70, 481
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 305
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 2 cut(s) 198, 279
BtgI CCRYGG 2 cut(s) 336, 531
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 210, 336, 621
Cac8I GCNNGC 4 cut(s) 88, 173, 224, 299
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 187, 324, 396
CseI GACGC 5 cut(s) 164, 422, 464, 490, 527
Csp6I GTAC 2 cut(s) 145, 367
CviAII CATG 3 cut(s) 184, 313, 532
CviQI GTAC 2 cut(s) 145, 367
DdeI CTNAG 2 cut(s) 27, 435
DpnI GATC 7 cut(s) 307, 317, 374, 407, 555, 560, 573
DpnII GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
EaeI YGGCCR 2 cut(s) 196, 277
EagI CGGCCG 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 2 cut(s) 177, 383
Eco31I GGTCTC 2 cut(s) 41, 345
Eco47I GGWCC 3 cut(s) 187, 324, 396
Eco52I CGGCCG 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 150, 355
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 177, 383
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 187, 316, 535
FaiI YATR 6 cut(s) 39, 108, 185, 314, 533, 594
FalI AAGNNNNNCTT 6 cut(s) 275, 307, 473, 505, 497, 529
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 183, 312, 531
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 7 cut(s) 112, 169, 199, 202, 220, 392, 522
FriOI GRGCYC 2 cut(s) 177, 383
Fsp4HI GCNGC 7 cut(s) 112, 169, 199, 202, 220, 392, 522
GlaI GCGC 1 cut(s) 159
GluI GCNGC 7 cut(s) 112, 169, 199, 202, 220, 392, 522
HaeIII GGCC 2 cut(s) 198, 279
HapII CCGG 2 cut(s) 87, 510
HgaI GACGC 5 cut(s) 164, 422, 464, 490, 527
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 3 cut(s) 456, 486, 519
Hin1II CATG 3 cut(s) 187, 316, 535
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 2 cut(s) 139, 454
HindII GTYRAC 2 cut(s) 139, 454
HinfI GANTC 4 cut(s) 23, 135, 140, 232
HpaII CCGG 2 cut(s) 87, 510
HphI GGTGA 2 cut(s) 49, 608
Hpy166II GTNNAC 3 cut(s) 139, 327, 454
Hpy188I TCNGA 4 cut(s) 28, 134, 320, 558
Hpy188III TCNNGA 2 cut(s) 478, 551
Hpy8I GTNNAC 3 cut(s) 139, 327, 454
Hpy99I CGWCG 3 cut(s) 95, 416, 521
HpyAV CCTTC 3 cut(s) 245, 315, 475
HpyCH4III ACNGT 5 cut(s) 61, 214, 246, 331, 337
HpyCH4IV ACGT 2 cut(s) 486, 582
HpyCH4V TGCA 5 cut(s) 114, 238, 391, 402, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 155, 472, 527
HpyF3I CTNAG 2 cut(s) 27, 435
HpySE526I ACGT 2 cut(s) 486, 582
Hsp92I GRCGYC 3 cut(s) 456, 486, 519
Hsp92II CATG 3 cut(s) 187, 316, 535
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 9 cut(s) 100, 137, 164, 293, 342, 369, 383, 412, 523
Lsp1109I GCAGC 4 cut(s) 98, 155, 188, 403
LweI GCATC 2 cut(s) 247, 462
MaeII ACGT 2 cut(s) 486, 582
MaeIII GTNAC 2 cut(s) 161, 331
MalI GATC 7 cut(s) 307, 317, 374, 407, 555, 560, 573
MboI GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
MboII GAAGA 7 cut(s) 70, 73, 283, 300, 400, 433, 481
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 3 cut(s) 177, 383, 546
MluCI AATT 1 cut(s) 424
MlyI GAGTC 3 cut(s) 134, 144, 241
MnlI CCTC 9 cut(s) 82, 115, 140, 215, 218, 334, 355, 370, 469
MreI CGCCGGCG 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 3 cut(s) 168, 201, 394
MspI CCGG 2 cut(s) 87, 510
MspR9I CCNGG 3 cut(s) 152, 357, 510
MvaI CCWGG 2 cut(s) 152, 357
MvnI CGCG 4 cut(s) 158, 160, 416, 524
MwoI GCNNNNNNNGC 4 cut(s) 117, 155, 472, 527
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 510
NcoI CCATGG 1 cut(s) 531
NdeII GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 3 cut(s) 187, 316, 535
NlaIV GGNNCC 2 cut(s) 189, 618
NmuCI GTSAC 2 cut(s) 161, 331
PcsI WCGNNNNNNNCGW 3 cut(s) 223, 483, 498
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 23
Pfl23II CGTACG 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 7 cut(s) 113, 170, 200, 203, 221, 393, 523
PleI GAGTC 3 cut(s) 134, 143, 240
PpsI GAGTC 3 cut(s) 134, 143, 240
Psp124BI GAGCTC 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 150, 355
PspGI CCWGG 2 cut(s) 150, 355
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 189, 618
PspPI GGNCC 3 cut(s) 187, 324, 396
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 2 cut(s) 146, 368
RsaNI GTAC 2 cut(s) 145, 367
SacI GAGCTC 1 cut(s) 177
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 7 cut(s) 112, 169, 199, 202, 220, 392, 522
Sau3AI GATC 7 cut(s) 305, 315, 372, 405, 553, 558, 571
Sau96I GGNCC 3 cut(s) 187, 324, 396
SchI GAGTC 3 cut(s) 134, 144, 241
ScrFI CCNGG 3 cut(s) 152, 357, 510
SduI GDGCHC 3 cut(s) 177, 383, 546
SetI ASST 8 cut(s) 74, 126, 170, 177, 326, 345, 489, 585
SfaNI GCATC 2 cut(s) 247, 462
SfcI CTRYAG 1 cut(s) 624
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 3 cut(s) 187, 324, 396
Sse9I AATT 1 cut(s) 424
SsiI CCGC 6 cut(s) 199, 220, 301, 394, 416, 522
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 150, 355, 508
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 5 cut(s) 61, 214, 246, 331, 337
TaiI ACGT 2 cut(s) 489, 585
TaqI TCGA 5 cut(s) 138, 375, 411, 516, 552
TaqII GACCGA 1 cut(s) 244
TasI AATT 1 cut(s) 424
TauI GCSGC 3 cut(s) 201, 222, 524
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 3 cut(s) 217, 336, 628
TseFI GTSAC 2 cut(s) 161, 331
TseI GCWGC 4 cut(s) 111, 168, 201, 391
Tsp45I GTSAC 2 cut(s) 161, 331
TspDTI ATGAA 3 cut(s) 17, 54, 88
TspGWI ACGGA 2 cut(s) 64, 287
TspRI CASTG 3 cut(s) 217, 336, 628
Tth111I GACNNNGTC 1 cut(s) 231
VpaK11BI GGWCC 3 cut(s) 187, 324, 396
XapI RAATTY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 138
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.