MD17G1211400.v1.1

LURP-one-related 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014447
Physical Location & Seq
Reverse (-)
25663018 .. 25664342
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1211400.v1.1.491

Sequence Viewer

Length: 627 bp
ATGAAAGAGCGGGTGCTTGTGGAACCTGCGTTCGTATTTGATCAGGATACCCACCTCACCGTTTCCAAAACCTCCATCTTCTTCCCCGGCGACGGCTTCACCGTCTACGACTGCAAAGGCCAGATGGTCTTCCGAGTCGACTCTTACGCCCCCGACGCCCACGACAGCAGCGAACTCGTCCTCATGGACCCCCAAGGCCGCTGCCTTCTCACTGTACGCCGAAAGAGACCGAGTCTGCATCAACGGTGGGAAGGCTTTGTGGGTGAGAGAACGGACGGCCAAAAGCCCATCTTCAGCGTACGGCGGTCCTCCATAATCGGACGGTCGAACGTGACGGTGGAGGTGTTCGGAGATCCAGGGGAGGAGTACCATATCGAGGGCTCGTTCGCGCAGCGCTGCTGCACGATCTTCAATGCAGAGAAGGAACCGGTGGCTGAGATCCGACGCAAAGTGGATGCCTCCACCCACGTGGTGCTCGGGAAGGATGTTTTCTCTCTCTGTCTCAAGCCTGGATTCGATGGGGCGTTTGCCATGGGAGTGGTGCTCGTGCTTGATCAGATCAACGGCGACGATAACGTTTTTGATGATGATGTTGTGGAGGAGGCGGAACCCACCGCCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

209

Amino Acids

23.24

Weight (kDa)

4.8

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 17 - 185 2.3e-39 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 10
AccI GTMKAC 2 cut(s) 105, 138
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 10, 199, 304, 605, 615
AclI AACGTT 1 cut(s) 576
AclWI GGATC 2 cut(s) 347, 433
AcoI YGGCCR 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 277
AcvI CACGTG 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 3 cut(s) 216, 300, 368
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 92, 376
AgeI ACCGGT 1 cut(s) 427
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 2 cut(s) 355, 508
AleI CACNNNNGTG 1 cut(s) 467
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
Alw21I GWGCWC 2 cut(s) 477, 546
Alw26I GTCTC 2 cut(s) 220, 506
AlwI GGATC 2 cut(s) 347, 433
Ama87I CYCGRG 1 cut(s) 476
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 3 cut(s) 118, 196, 277
ApeKI GCWGC 5 cut(s) 168, 201, 391, 396, 399
AsiGI ACCGGT 1 cut(s) 427
AspLEI GCGC 2 cut(s) 391, 396
AspS9I GGNCC 2 cut(s) 187, 306
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 49, 91, 275
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 2 cut(s) 187, 306
BanII GRGCYC 1 cut(s) 383
BauI CACGAG 1 cut(s) 545
BbrPI CACGTG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 477, 546
BbvI GCAGC 5 cut(s) 180, 188, 383, 386, 403
BccI CCATC 4 cut(s) 83, 118, 296, 512
BceAI ACGGC 4 cut(s) 109, 292, 317, 580
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 357, 510
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 2 cut(s) 40, 553
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 220, 506
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 6 cut(s) 169, 199, 202, 392, 397, 400
BlsI GCNGC 6 cut(s) 170, 200, 203, 393, 398, 401
Bme1390I CCNGG 3 cut(s) 87, 357, 510
Bme18I GGWCC 2 cut(s) 187, 306
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 187, 306
BmiI GGNNCC 4 cut(s) 24, 189, 426, 609
BmrFI CCNGG 3 cut(s) 87, 357, 510
BmsI GCATC 2 cut(s) 247, 445
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 4 cut(s) 85, 193, 356, 531
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 376
Bse118I RCCGGY 1 cut(s) 427
BseBI CCWGG 2 cut(s) 357, 510
BseDI CCNNGG 4 cut(s) 85, 193, 356, 531
BseGI GGATG 2 cut(s) 460, 490
BseLI CCNNNNNNNGG 2 cut(s) 92, 376
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 377, 614
BseXI GCAGC 5 cut(s) 180, 188, 383, 386, 403
BsgI GTGCAG 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 3 cut(s) 120, 198, 279
BshTI ACCGGT 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 477, 546
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 2 cut(s) 87, 428
BsiWI CGTACG 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 92, 376
BsmAI GTCTC 2 cut(s) 220, 506
BsnI GGCC 3 cut(s) 120, 198, 279
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 383, 477, 546
Bsp143I GATC 6 cut(s) 40, 352, 405, 438, 553, 558
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 5 cut(s) 10, 199, 304, 605, 615
BspANI GGCC 3 cut(s) 120, 198, 279
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 4 cut(s) 24, 189, 426, 609
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 2 cut(s) 347, 433
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 4 cut(s) 85, 193, 356, 531
BssMI GATC 6 cut(s) 40, 352, 405, 438, 553, 558
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 2 cut(s) 193, 531
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 357, 510
Bst4CI ACNGT 6 cut(s) 61, 103, 214, 246, 324, 337
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 469
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 460, 490
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 2 cut(s) 391, 396
BstKTI GATC 6 cut(s) 43, 355, 408, 441, 556, 561
BstMAI GTCTC 2 cut(s) 220, 506
BstMBI GATC 6 cut(s) 40, 352, 405, 438, 553, 558
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 357, 510
BstSCI CCNGG 3 cut(s) 85, 355, 508
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 180, 188, 383, 386, 403
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 352, 438
BstXI CCANNNNNNTGG 2 cut(s) 469, 538
BstYI RGATCY 2 cut(s) 352, 438
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 3 cut(s) 120, 198, 279
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 460, 490
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 391, 396
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 187, 306
CseI GACGC 2 cut(s) 164, 453
Csp6I GTAC 3 cut(s) 215, 299, 367
CspAI ACCGGT 1 cut(s) 427
CviAII CATG 2 cut(s) 184, 532
CviJI RGCY 9 cut(s) 96, 120, 198, 255, 279, 286, 381, 434, 508
CviKI_1 RGCY 9 cut(s) 96, 120, 198, 255, 279, 286, 381, 434, 508
CviQI GTAC 3 cut(s) 215, 299, 367
DdeI CTNAG 1 cut(s) 435
DpnI GATC 6 cut(s) 42, 354, 407, 440, 555, 560
DpnII GATC 6 cut(s) 40, 352, 405, 438, 553, 558
DraIII CACNNNGTG 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 193, 531
Eco24I GRGCYC 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 187, 306
Eco47III AGCGCT 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 355, 508
EcoT14I CCWWGG 2 cut(s) 193, 531
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 2 cut(s) 193, 531
FaeI CATG 2 cut(s) 187, 535
FaiI YATR 4 cut(s) 185, 314, 372, 533
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 183, 531
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 2 cut(s) 40, 553
FblI GTMKAC 2 cut(s) 105, 138
Fnu4HI GCNGC 6 cut(s) 169, 199, 202, 392, 397, 400
FokI GGATG 2 cut(s) 467, 497
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 6 cut(s) 169, 199, 202, 392, 397, 400
GlaI GCGC 2 cut(s) 390, 395
GluI GCNGC 6 cut(s) 169, 199, 202, 392, 397, 400
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 120, 198, 279
HapII CCGG 2 cut(s) 87, 428
HgaI GACGC 2 cut(s) 164, 453
HhaI GCGC 2 cut(s) 391, 396
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 187, 535
Hin6I GCGC 2 cut(s) 389, 394
HinP1I GCGC 2 cut(s) 389, 394
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 4 cut(s) 135, 140, 232, 513
HpaII CCGG 2 cut(s) 87, 428
HphI GGTGA 3 cut(s) 49, 91, 275
Hpy166II GTNNAC 2 cut(s) 106, 139
Hpy188I TCNGA 5 cut(s) 134, 320, 350, 443, 558
Hpy188III TCNNGA 2 cut(s) 44, 478
Hpy8I GTNNAC 2 cut(s) 106, 139
Hpy99I CGWCG 4 cut(s) 95, 158, 447, 572
HpyAV CCTTC 4 cut(s) 215, 245, 415, 475
HpyCH4III ACNGT 6 cut(s) 61, 103, 214, 246, 324, 337
HpyCH4IV ACGT 3 cut(s) 330, 468, 576
HpyCH4V TGCA 4 cut(s) 114, 238, 402, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 3 cut(s) 330, 468, 576
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 187, 535
HspAI GCGC 2 cut(s) 389, 394
Ksp22I TGATCA 2 cut(s) 40, 553
Kzo9I GATC 6 cut(s) 40, 352, 405, 438, 553, 558
LpnPI CCDG 9 cut(s) 29, 39, 100, 134, 342, 369, 441, 495, 522
Lsp1109I GCAGC 5 cut(s) 180, 188, 383, 386, 403
LweI GCATC 2 cut(s) 247, 445
MaeII ACGT 3 cut(s) 330, 468, 576
MaeIII GTNAC 1 cut(s) 331
MalI GATC 6 cut(s) 42, 354, 407, 440, 555, 560
MbiI CCGCTC 1 cut(s) 10
MboI GATC 6 cut(s) 40, 352, 405, 438, 553, 558
MboII GAAGA 5 cut(s) 70, 73, 121, 283, 400
MflI RGATCY 2 cut(s) 352, 438
MhlI GDGCHC 3 cut(s) 383, 477, 546
MlyI GAGTC 3 cut(s) 134, 144, 241
MmeI TCCRAC 1 cut(s) 466
MslI CAYNNNNRTG 2 cut(s) 467, 536
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 2 cut(s) 87, 428
MspR9I CCNGG 3 cut(s) 87, 357, 510
MteI GCGCNGCGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 357, 510
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 531
NdeII GATC 6 cut(s) 40, 352, 405, 438, 553, 558
NlaIII CATG 2 cut(s) 187, 535
NlaIV GGNNCC 4 cut(s) 24, 189, 426, 609
NmuCI GTSAC 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 467
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 168
PfeI GAWTC 1 cut(s) 513
Pfl23II CGTACG 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 231
PinAI ACCGGT 1 cut(s) 427
PkrI GCNGC 6 cut(s) 170, 200, 203, 393, 398, 401
PleI GAGTC 3 cut(s) 134, 143, 240
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 3 cut(s) 134, 143, 240
Ppu21I YACGTR 1 cut(s) 469
Psp1406I AACGTT 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 355, 508
PspCI CACGTG 1 cut(s) 469
PspGI CCWGG 2 cut(s) 355, 508
PspLI CGTACG 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 24, 189, 426, 609
PspPI GGNCC 2 cut(s) 187, 306
PsuI RGATCY 2 cut(s) 352, 438
PsyI GACNNNGTC 1 cut(s) 231
RsaI GTAC 3 cut(s) 216, 300, 368
RsaNI GTAC 3 cut(s) 215, 299, 367
RseI CAYNNNNRTG 2 cut(s) 467, 536
SalI GTCGAC 1 cut(s) 137
SatI GCNGC 6 cut(s) 169, 199, 202, 392, 397, 400
Sau3AI GATC 6 cut(s) 40, 352, 405, 438, 553, 558
Sau96I GGNCC 2 cut(s) 187, 306
SchI GAGTC 3 cut(s) 134, 144, 241
ScrFI CCNGG 3 cut(s) 87, 357, 510
SduI GDGCHC 3 cut(s) 383, 477, 546
SetI ASST 7 cut(s) 28, 57, 74, 333, 345, 471, 579
SfaNI GCATC 2 cut(s) 247, 445
SinI GGWCC 2 cut(s) 187, 306
SmiMI CAYNNNNRTG 2 cut(s) 467, 536
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SsiI CCGC 5 cut(s) 10, 199, 304, 605, 615
StyD4I CCNGG 3 cut(s) 85, 355, 508
StyI CCWWGG 2 cut(s) 193, 531
TaaI ACNGT 6 cut(s) 61, 103, 214, 246, 324, 337
TaiI ACGT 3 cut(s) 333, 471, 579
TaqI TCGA 4 cut(s) 138, 326, 375, 516
TaqII GACCGA 1 cut(s) 244
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 513
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 5 cut(s) 168, 201, 391, 396, 399
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 187, 306
XmiI GTMKAC 2 cut(s) 105, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.