FvH4_6g29760

LURP-one-related 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014447
Physical Location & Seq
Forward (+)
22997434 .. 22998970
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29760.t1

Sequence Viewer

Length: 639 bp
ATGAAGAAAGGGCTGGTGGAACCTGCCTTTGTGTTCGAGGAAGAAACCTTCCTCACCGTTTCCAAAACCTCCCTCTTCTTCGCCGGCGACGGCTTCTCCGTCTACAACCGCAACGCTCAGCTCGTCTTCCGAGTCGACTCCTATGGCCCCGACCCCCACGACAGAACCGAGCTCGTCCTCATGGACGCCACCGGCCGCTGCCTCCTCACCGTCCGCCGAAAGAGGCCAAGCCTGCATCACCGGTGGGAAGGGTATGTAGGGGAGAGGATGGAGGGGCAGAAGCCGATCTTCAGCGTCAGGCGGTCGTCCATAATGGGACGGTCGAGCGTCACTGTGGAAGTCTTCCGGGATCCACCGGAGGAGTACCAGATCGAAGGCTCGTTCGCGCAGCGCAATTGCACAATCTACAACGCAGACAAGGAACCGGTGGCTGAGATCCACCGCAAAGTAGATGTTTCGACAAACGTGGTGCTTGGGAAGGACGTCTTCTCTCTTGCACTGAAGGCTGGCTTCGATGCAGCTTTTGCCATGGGACTGGTGCTCGTGCTTGACCAGATCAACGGCGATGGGTTTGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGATGGACCTGACCGCAGTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

213

Amino Acids

23.95

Weight (kDa)

4.72

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 18 - 184 2.3e-39 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 2 cut(s) 102, 135
AccII CGCG 1 cut(s) 386
AciI CCGC 6 cut(s) 109, 196, 214, 301, 442, 627
AclWI GGATC 3 cut(s) 344, 357, 430
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 274, 521
AcyI GRCGYC 2 cut(s) 186, 483
AfaI GTAC 1 cut(s) 365
AgeI ACCGGT 2 cut(s) 240, 424
AluBI AGCT 3 cut(s) 121, 172, 521
AluI AGCT 3 cut(s) 121, 172, 521
Alw21I GWGCWC 2 cut(s) 174, 543
AlwI GGATC 3 cut(s) 344, 357, 430
AoxI GGCC 3 cut(s) 145, 193, 224
ApeKI GCWGC 3 cut(s) 198, 388, 518
AsiGI ACCGGT 2 cut(s) 240, 424
AspLEI GCGC 2 cut(s) 388, 393
AspS9I GGNCC 2 cut(s) 146, 619
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 46, 199, 230
AvaII GGWCC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 3 cut(s) 118, 334, 478
Bbv12I GWGCWC 2 cut(s) 174, 543
BbvI GCAGC 3 cut(s) 185, 400, 530
BccI CCATC 3 cut(s) 262, 560, 610
BceAI ACGGC 2 cut(s) 106, 577
BcnI CCSGG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 4 cut(s) 196, 199, 389, 519
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 4 cut(s) 197, 200, 390, 520
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 146, 619
BmiI GGNNCC 4 cut(s) 21, 148, 351, 423
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 244, 505
BpiI GAAGAC 3 cut(s) 118, 334, 478
Bpu1102I GCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 347
BsaHI GRCGYC 2 cut(s) 186, 483
BsaJI CCNNGG 1 cut(s) 528
BsaWI WCCGGW 3 cut(s) 240, 355, 424
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse118I RCCGGY 4 cut(s) 83, 191, 240, 424
Bse1I ACTGG 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 131, 423
BseNI ACTGG 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 185, 400, 530
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 3 cut(s) 196, 305, 323
BshFI GGCC 3 cut(s) 147, 195, 226
BshTI ACCGGT 2 cut(s) 240, 424
BsiEI CGRYCG 3 cut(s) 196, 305, 323
BsiHKAI GWGCWC 2 cut(s) 174, 543
BsiSI CCGG 6 cut(s) 84, 192, 241, 346, 356, 425
BslFI GGGAC 2 cut(s) 330, 546
BsmFI GGGAC 2 cut(s) 330, 546
BsnI GGCC 3 cut(s) 147, 195, 226
Bsp1286I GDGCHC 2 cut(s) 174, 543
Bsp143I GATC 5 cut(s) 285, 349, 369, 435, 555
Bsp1720I GCTNAGC 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 6 cut(s) 109, 196, 214, 301, 442, 627
BspANI GGCC 3 cut(s) 147, 195, 226
BspCNI CTCAG 2 cut(s) 130, 424
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 4 cut(s) 21, 148, 351, 423
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 344, 357, 430
BsrFI RCCGGY 4 cut(s) 83, 191, 240, 424
BsrI ACTGG 1 cut(s) 540
BssAI RCCGGY 4 cut(s) 83, 191, 240, 424
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 5 cut(s) 285, 349, 369, 435, 555
BssNI GRCGYC 2 cut(s) 186, 483
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 58, 211, 321, 334
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 186, 483
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 85, 233, 508
BstDEI CTNAG 2 cut(s) 117, 432
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 2 cut(s) 388, 393
BstKTI GATC 5 cut(s) 288, 352, 372, 438, 558
BstMBI GATC 5 cut(s) 285, 349, 369, 435, 555
BstMCI CGRYCG 3 cut(s) 196, 305, 323
BstMWI GCNNNNNNNGC 3 cut(s) 232, 503, 524
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 185, 400, 530
BstV2I GAAGAC 3 cut(s) 118, 334, 478
BstX2I RGATCY 2 cut(s) 349, 435
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 2 cut(s) 349, 435
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 3 cut(s) 147, 195, 226
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 330, 497, 636
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 85, 233, 508
CfoI GCGC 2 cut(s) 388, 393
Cfr10I RCCGGY 4 cut(s) 83, 191, 240, 424
Cfr13I GGNCC 2 cut(s) 146, 619
CseI GACGC 3 cut(s) 194, 283, 316
Csp6I GTAC 1 cut(s) 364
CspAI ACCGGT 2 cut(s) 240, 424
CviAII CATG 2 cut(s) 181, 529
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 117, 432
DpnI GATC 5 cut(s) 287, 351, 371, 437, 557
DpnII GATC 5 cut(s) 285, 349, 369, 435, 555
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 619
Eco52I CGGCCG 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 274, 521
EcoICRI GAGCTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 184, 532
FaiI YATR 5 cut(s) 144, 182, 255, 311, 530
FalI AAGNNNNNCTT 6 cut(s) 272, 304, 470, 502, 494, 526
FaqI GGGAC 2 cut(s) 330, 546
FatI CATG 2 cut(s) 180, 528
FblI GTMKAC 2 cut(s) 102, 135
Fnu4HI GCNGC 4 cut(s) 196, 199, 389, 519
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 196, 199, 389, 519
GlaI GCGC 2 cut(s) 387, 392
GluI GCNGC 4 cut(s) 196, 199, 389, 519
HaeIII GGCC 3 cut(s) 147, 195, 226
HapII CCGG 6 cut(s) 84, 192, 241, 346, 356, 425
HgaI GACGC 3 cut(s) 194, 283, 316
HhaI GCGC 2 cut(s) 388, 393
Hin1I GRCGYC 2 cut(s) 186, 483
Hin1II CATG 2 cut(s) 184, 532
Hin6I GCGC 2 cut(s) 386, 391
HinP1I GCGC 2 cut(s) 386, 391
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 132, 137
HpaII CCGG 6 cut(s) 84, 192, 241, 346, 356, 425
HphI GGTGA 3 cut(s) 46, 199, 230
Hpy166II GTNNAC 2 cut(s) 103, 136
Hpy188I TCNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 103, 136
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 5 cut(s) 58, 242, 368, 472, 496
HpyCH4III ACNGT 4 cut(s) 58, 211, 321, 334
HpyCH4IV ACGT 2 cut(s) 465, 483
HpyCH4V TGCA 4 cut(s) 235, 399, 497, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 503, 524
HpyF3I CTNAG 2 cut(s) 117, 432
HpySE526I ACGT 2 cut(s) 465, 483
Hsp92I GRCGYC 2 cut(s) 186, 483
Hsp92II CATG 2 cut(s) 184, 532
HspAI GCGC 2 cut(s) 386, 391
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 285, 349, 369, 435, 555
Lsp1109I GCAGC 3 cut(s) 185, 400, 530
LweI GCATC 2 cut(s) 244, 505
MaeII ACGT 2 cut(s) 465, 483
MaeIII GTNAC 1 cut(s) 328
MalI GATC 5 cut(s) 287, 351, 371, 437, 557
MboI GATC 5 cut(s) 285, 349, 369, 435, 555
MboII GAAGA 8 cut(s) 16, 53, 67, 70, 118, 280, 334, 478
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 2 cut(s) 349, 435
MhlI GDGCHC 2 cut(s) 174, 543
MluCI AATT 1 cut(s) 394
MlyI GAGTC 2 cut(s) 131, 141
MreI CGCCGGCG 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 6 cut(s) 84, 192, 241, 346, 356, 425
MspR9I CCNGG 1 cut(s) 347
MteI GCGCNGCGC 1 cut(s) 389
MunI CAATTG 1 cut(s) 394
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 232, 503, 524
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 528
NdeII GATC 5 cut(s) 285, 349, 369, 435, 555
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 184, 532
NlaIV GGNNCC 4 cut(s) 21, 148, 351, 423
NmuCI GTSAC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 120, 165
PdiI GCCGGC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 345
PinAI ACCGGT 2 cut(s) 240, 424
PkrI GCNGC 4 cut(s) 197, 200, 390, 520
PleI GAGTC 2 cut(s) 131, 140
PpsI GAGTC 2 cut(s) 131, 140
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 21, 148, 351, 423
PspPI GGNCC 2 cut(s) 146, 619
PsuI RGATCY 2 cut(s) 349, 435
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 4 cut(s) 196, 199, 389, 519
Sau3AI GATC 5 cut(s) 285, 349, 369, 435, 555
Sau96I GGNCC 2 cut(s) 146, 619
SchI GAGTC 2 cut(s) 131, 141
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 174, 543
SetI ASST 9 cut(s) 25, 50, 71, 123, 174, 468, 486, 523, 624
SfaNI GCATC 2 cut(s) 244, 505
SgrAI CRCCGGYG 2 cut(s) 83, 240
SinI GGWCC 1 cut(s) 619
Sse9I AATT 1 cut(s) 394
SsiI CCGC 6 cut(s) 109, 196, 214, 301, 442, 627
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 58, 211, 321, 334
TaiI ACGT 2 cut(s) 468, 486
TaqI TCGA 6 cut(s) 36, 135, 323, 372, 458, 513
TasI AATT 1 cut(s) 394
TauI GCSGC 1 cut(s) 198
TscAI CASTG 3 cut(s) 337, 504, 636
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 3 cut(s) 198, 388, 518
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 3 cut(s) 337, 504, 636
VpaK11BI GGWCC 1 cut(s) 619
XmiI GTMKAC 2 cut(s) 102, 135
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.