Rh2DG398700

LURP-one-related 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014447
Physical Location & Seq
Forward (+)
57975299 .. 57976128
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG398700.1

Sequence Viewer

Length: 615 bp
ATGAAGGGCGGGCTCGTGGAACCTGCCTTCGTATTCGAGGAAGAAACCTACCTCACCGTTTCCAAAACCTCCCTCTTCTTCGCCGGCGACGGCTTCTCCGTCTACGATCGCAACGCTCAACTCGTCTTCCGAGTCGACTCGTACGGCCCCGACCCCCACGACAGGACCGAGCTCGTCCTCATGGACGCCACCGGCCGCTGCCTTCTCACCGTCCGTCGAAAGAGGCCGAGTCTGCATCACCGGTGGGAAGGGTATGTCGGGGAGAGGATGGAGGGCCAGAAGCCAATCTTCAGCGTCCGCCGGTCGTCCATAATCGGACGGTCGAGCGTGACCGTGGAAGTCTTCCGAGAGTCACCGGAGGAGTACCAGATCGAAGGGTCGTTCGCGCAGCGCTGCTGCACGATCTTCAACGCTGAGAAGGAACCGGTGGCTGAGATCCGACGCAAAGTGGATGCTTCCACCCAAGTGGTGCTTGGGAAGGACGTCTTCTCTCTCGCACTCAGGCCTGGCTTCGATGCAGCTTTTGCCATGGGACTGGTGCTCGTGCTTGACCAGATCAACGGCGATGGGTTTGTGGAGGAGGAGGTGGAGATGGACCTGACCGCAGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

204

Amino Acids

22.97

Weight (kDa)

4.93

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 18 - 184 4.1e-40 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 2 cut(s) 102, 135
AccII CGCG 1 cut(s) 386
AciI CCGC 4 cut(s) 9, 196, 298, 603
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 274
AcyI GRCGYC 2 cut(s) 186, 483
AfaI GTAC 2 cut(s) 143, 365
AfeI AGCGCT 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 162
AgeI ACCGGT 2 cut(s) 240, 424
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 505
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 2 cut(s) 172, 521
AluI AGCT 2 cut(s) 172, 521
Alw21I GWGCWC 2 cut(s) 174, 543
AlwI GGATC 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 392
AoxI GGCC 5 cut(s) 145, 193, 224, 274, 503
ApeKI GCWGC 5 cut(s) 198, 388, 393, 396, 518
AsiGI ACCGGT 2 cut(s) 240, 424
AspLEI GCGC 2 cut(s) 388, 393
AspS9I GGNCC 4 cut(s) 146, 165, 274, 595
AsuHPI GGTGA 4 cut(s) 46, 199, 230, 345
AvaII GGWCC 2 cut(s) 165, 595
BanII GRGCYC 2 cut(s) 15, 174
BauI CACGAG 2 cut(s) 14, 542
BbsI GAAGAC 3 cut(s) 118, 334, 478
Bbv12I GWGCWC 2 cut(s) 174, 543
BbvI GCAGC 5 cut(s) 185, 380, 383, 400, 530
BccI CCATC 3 cut(s) 262, 560, 586
BceAI ACGGC 3 cut(s) 106, 160, 577
BciT130I CCWGG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 6 cut(s) 196, 199, 389, 394, 397, 519
BlsI GCNGC 6 cut(s) 197, 200, 390, 395, 398, 520
Bme1390I CCNGG 1 cut(s) 507
Bme18I GGWCC 2 cut(s) 165, 595
BmgT120I GGNCC 4 cut(s) 146, 165, 274, 595
BmiI GGNNCC 3 cut(s) 21, 148, 423
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 3 cut(s) 244, 442, 505
BpiI GAAGAC 3 cut(s) 118, 334, 478
BsaHI GRCGYC 2 cut(s) 186, 483
BsaJI CCNNGG 2 cut(s) 333, 528
BsaWI WCCGGW 3 cut(s) 240, 355, 424
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 5 cut(s) 83, 191, 240, 300, 424
Bse1I ACTGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 333, 528
BseGI GGATG 2 cut(s) 273, 457
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 3 cut(s) 405, 423, 514
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 3 cut(s) 374, 593, 596
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 5 cut(s) 185, 380, 383, 400, 530
BsgI GTGCAG 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 4 cut(s) 109, 196, 305, 323
BshFI GGCC 5 cut(s) 147, 195, 226, 276, 505
BshTI ACCGGT 2 cut(s) 240, 424
BsiEI CGRYCG 4 cut(s) 109, 196, 305, 323
BsiHKAI GWGCWC 2 cut(s) 174, 543
BsiSI CCGG 6 cut(s) 84, 192, 241, 301, 356, 425
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 5 cut(s) 147, 195, 226, 276, 505
Bsp1286I GDGCHC 3 cut(s) 15, 174, 543
Bsp143I GATC 5 cut(s) 106, 369, 402, 435, 555
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 4 cut(s) 9, 196, 298, 603
BspANI GGCC 5 cut(s) 147, 195, 226, 276, 505
BspCNI CTCAG 3 cut(s) 406, 424, 513
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 3 cut(s) 21, 148, 423
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 430
BsrFI RCCGGY 5 cut(s) 83, 191, 240, 300, 424
BsrI ACTGG 1 cut(s) 540
BssAI RCCGGY 5 cut(s) 83, 191, 240, 300, 424
BssECI CCNNGG 2 cut(s) 333, 528
BssMI GATC 5 cut(s) 106, 369, 402, 435, 555
BssNI GRCGYC 2 cut(s) 186, 483
BssSI CACGAG 2 cut(s) 14, 542
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 2 cut(s) 14, 542
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 4 cut(s) 58, 211, 321, 334
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 186, 483
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 11, 85
BstDEI CTNAG 3 cut(s) 414, 432, 500
BstDSI CCRYGG 2 cut(s) 333, 528
BstF5I GGATG 2 cut(s) 273, 457
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 2 cut(s) 388, 393
BstKTI GATC 5 cut(s) 109, 372, 405, 438, 558
BstMBI GATC 5 cut(s) 106, 369, 402, 435, 555
BstMCI CGRYCG 4 cut(s) 109, 196, 305, 323
BstMWI GCNNNNNNNGC 2 cut(s) 232, 524
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 505
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 5 cut(s) 185, 380, 383, 400, 530
BstV2I GAAGAC 3 cut(s) 118, 334, 478
BstX2I RGATCY 1 cut(s) 435
BstXI CCANNNNNNTGG 2 cut(s) 466, 535
BstYI RGATCY 1 cut(s) 435
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 5 cut(s) 147, 195, 226, 276, 505
BtgI CCRYGG 2 cut(s) 333, 528
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 2 cut(s) 273, 457
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 11, 85
CfoI GCGC 2 cut(s) 388, 393
Cfr10I RCCGGY 5 cut(s) 83, 191, 240, 300, 424
Cfr13I GGNCC 4 cut(s) 146, 165, 274, 595
CseI GACGC 3 cut(s) 194, 283, 450
Csp6I GTAC 2 cut(s) 142, 364
CspAI ACCGGT 2 cut(s) 240, 424
CviAII CATG 2 cut(s) 181, 529
CviQI GTAC 2 cut(s) 142, 364
DdeI CTNAG 3 cut(s) 414, 432, 500
DpnI GATC 5 cut(s) 108, 371, 404, 437, 557
DpnII GATC 5 cut(s) 106, 369, 402, 435, 555
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 2 cut(s) 15, 174
Eco47I GGWCC 2 cut(s) 165, 595
Eco47III AGCGCT 1 cut(s) 392
Eco52I CGGCCG 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 2 cut(s) 15, 174
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 184, 532
FaiI YATR 4 cut(s) 182, 255, 311, 530
FalI AAGNNNNNCTT 6 cut(s) 272, 304, 456, 488, 470, 502
FaqI GGGAC 1 cut(s) 546
FatI CATG 2 cut(s) 180, 528
FauI CCCGC 1 cut(s) 2
FblI GTMKAC 2 cut(s) 102, 135
Fnu4HI GCNGC 6 cut(s) 196, 199, 389, 394, 397, 519
FokI GGATG 2 cut(s) 280, 464
FriOI GRGCYC 2 cut(s) 15, 174
Fsp4HI GCNGC 6 cut(s) 196, 199, 389, 394, 397, 519
GlaI GCGC 2 cut(s) 387, 392
GluI GCNGC 6 cut(s) 196, 199, 389, 394, 397, 519
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 5 cut(s) 147, 195, 226, 276, 505
HapII CCGG 6 cut(s) 84, 192, 241, 301, 356, 425
HgaI GACGC 3 cut(s) 194, 283, 450
HhaI GCGC 2 cut(s) 388, 393
Hin1I GRCGYC 2 cut(s) 186, 483
Hin1II CATG 2 cut(s) 184, 532
Hin6I GCGC 2 cut(s) 386, 391
HinP1I GCGC 2 cut(s) 386, 391
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 132, 137, 229, 350
HpaII CCGG 6 cut(s) 84, 192, 241, 301, 356, 425
HphI GGTGA 4 cut(s) 46, 199, 230, 345
Hpy166II GTNNAC 2 cut(s) 103, 136
Hpy188I TCNGA 4 cut(s) 131, 317, 347, 440
Hpy8I GTNNAC 2 cut(s) 103, 136
Hpy99I CGWCG 3 cut(s) 92, 219, 444
HpyAV CCTTC 6 cut(s) 37, 212, 242, 368, 412, 472
HpyCH4III ACNGT 4 cut(s) 58, 211, 321, 334
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 3 cut(s) 235, 399, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 524
HpyF3I CTNAG 3 cut(s) 414, 432, 500
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 2 cut(s) 186, 483
Hsp92II CATG 2 cut(s) 184, 532
HspAI GCGC 2 cut(s) 386, 391
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 106, 369, 402, 435, 555
Lsp1109I GCAGC 5 cut(s) 185, 380, 383, 400, 530
LweI GCATC 3 cut(s) 244, 442, 505
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 328, 351
MalI GATC 5 cut(s) 108, 371, 404, 437, 557
MboI GATC 5 cut(s) 106, 369, 402, 435, 555
MboII GAAGA 8 cut(s) 53, 67, 70, 118, 280, 334, 397, 478
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 3 cut(s) 15, 174, 543
MlyI GAGTC 4 cut(s) 131, 141, 238, 359
MmeI TCCRAC 1 cut(s) 463
MreI CGCCGGCG 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 6 cut(s) 84, 192, 241, 301, 356, 425
MspR9I CCNGG 1 cut(s) 507
MteI GCGCNGCGC 1 cut(s) 389
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 232, 524
NaeI GCCGGC 1 cut(s) 85
NcoI CCATGG 1 cut(s) 528
NdeII GATC 5 cut(s) 106, 369, 402, 435, 555
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 2 cut(s) 184, 532
NlaIV GGNNCC 3 cut(s) 21, 148, 423
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 328, 351
OliI CACNNNNGTG 1 cut(s) 464
PceI AGGCCT 1 cut(s) 505
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 120, 165
PdiI GCCGGC 1 cut(s) 85
Pfl23II CGTACG 1 cut(s) 141
PinAI ACCGGT 2 cut(s) 240, 424
PkrI GCNGC 6 cut(s) 197, 200, 390, 395, 398, 520
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 4 cut(s) 131, 140, 237, 358
PpsI GAGTC 4 cut(s) 131, 140, 237, 358
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 21, 148, 423
PspPI GGNCC 4 cut(s) 146, 165, 274, 595
PsuI RGATCY 1 cut(s) 435
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 2 cut(s) 143, 365
RsaNI GTAC 2 cut(s) 142, 364
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 6 cut(s) 196, 199, 389, 394, 397, 519
Sau3AI GATC 5 cut(s) 106, 369, 402, 435, 555
Sau96I GGNCC 4 cut(s) 146, 165, 274, 595
SchI GAGTC 4 cut(s) 131, 141, 238, 359
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 3 cut(s) 15, 174, 543
SetI ASST 9 cut(s) 25, 50, 54, 71, 174, 486, 523, 588, 600
SfaNI GCATC 3 cut(s) 244, 442, 505
SgrAI CRCCGGYG 2 cut(s) 83, 240
SinI GGWCC 2 cut(s) 165, 595
SmiMI CAYNNNNRTG 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 4 cut(s) 9, 196, 298, 603
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 58, 211, 321, 334
TaiI ACGT 1 cut(s) 486
TaqI TCGA 6 cut(s) 36, 135, 217, 323, 372, 513
TaqII GACCGA 1 cut(s) 182
TauI GCSGC 1 cut(s) 198
TseFI GTSAC 2 cut(s) 328, 351
TseI GCWGC 5 cut(s) 198, 388, 393, 396, 518
Tsp45I GTSAC 2 cut(s) 328, 351
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 88, 203
VpaK11BI GGWCC 2 cut(s) 165, 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmiI GTMKAC 2 cut(s) 102, 135
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.