Prupe.3G087000_v2.0.a1

LURP-one-related 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014447
Physical Location & Seq
Reverse (-)
6446926 .. 6448459
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G087000.1

Sequence Viewer

Length: 855 bp
ATGCAAATTAACGCACATCTCAAAAAAAAAACCAAAAGCTCCGAGTTCTCACCGTGTCCCTTTCACTTCAACGCATATCTCAGTCTTCCCTTCACTTCAACGCCATCAATATTTCTTTCTTCCACAGCGTCCATATTTATTTCCCCGCTCTCAGATTCAGATCAACAATCTCAAAGACCCCCCGAAAAAAAAAAGAAAAGAGAGAGAGAGAGAGCTCTTCATTTACTGTTTGATAAAATGAAAGAGGGGTTGCTTGAGAATTCTAGGTTCGTATTTGATCAAGAGACCCTCCTCACCGTTTGCAAAACCTGCCTCTTCTTCCCCGGCGATGGCTTCACTGTCTACGACTGCAAGGGCCAACTCGTCTTCCGAGTCGACTCGTACGGCCCCGACCCGCGCGACAGAAGCGAAGTCGTCCTCATGGACGCCCACGGCCGCTGCCTCCTCACCGTACGCCGCAAGAGGCCGAGTCTGCATCAACGGTGGGAAGGGTTTGAGGGGGAGAGAACGGACGGCCAGAAGCCCATCTTCAGCGTGCGAAGGTCGTCCATAATCGGACGGTCCAGCATGACCGTGGAGGTGTACGGAGACCCAGGCGAGGAGTACCAGATCGAGGGCTCATTTGCGCAGAGATGCTGCACGATCTTCAATGCGGAGAAGGAATCAGTGGCTGAGATTCGACGCAAAGTGGATGCTTCCACCCACGTGGTGCTTGGGAAGGACGTTTTCTCTCTCTGCATCAAGCCCGGGTTTGATGGGGCCTTTGCGATGGGATTGGTGCTCGTCCTTGATCAGATCAACGGTGATGATTATGGGGATGATGGTATTGAGATGGACCCCACCGCAGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

285

Amino Acids

32.02

Weight (kDa)

6.12

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 148
AccI GTMKAC 2 cut(s) 342, 375
AccII CGCG 2 cut(s) 397, 399
AciI CCGC 6 cut(s) 146, 395, 436, 457, 653, 843
AcoI YGGCCR 2 cut(s) 433, 514
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 514
AcvI CACGTG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 4 cut(s) 383, 453, 584, 605
AfiI CCNNNNNNNGG 3 cut(s) 329, 598, 613
AgsI TTSAA 3 cut(s) 70, 99, 649
AjnI CCWGG 1 cut(s) 592
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 2 cut(s) 39, 215
AluI AGCT 2 cut(s) 39, 215
Alw21I GWGCWC 2 cut(s) 217, 783
Alw26I GTCTC 2 cut(s) 278, 582
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 6 cut(s) 355, 385, 433, 464, 514, 759
ApeKI GCWGC 2 cut(s) 438, 636
ApoI RAATTY 1 cut(s) 259
AspLEI GCGC 2 cut(s) 399, 628
AspS9I GGNCC 5 cut(s) 355, 386, 561, 759, 835
AsuC2I CCSGG 3 cut(s) 324, 747, 748
AsuHPI GGTGA 4 cut(s) 42, 286, 439, 815
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 2 cut(s) 561, 835
BanII GRGCYC 2 cut(s) 217, 620
BbrPI CACGTG 1 cut(s) 706
BbsI GAAGAC 2 cut(s) 77, 358
Bbv12I GWGCWC 2 cut(s) 217, 783
BbvI GCAGC 2 cut(s) 425, 623
BccI CCATC 7 cut(s) 112, 323, 533, 749, 763, 815, 826
BceAI ACGGC 3 cut(s) 400, 448, 529
BciT130I CCWGG 1 cut(s) 594
BclI TGATCA 2 cut(s) 277, 790
BcnI CCSGG 3 cut(s) 324, 747, 748
BcoDI GTCTC 2 cut(s) 278, 582
BfaI CTAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 436, 439, 457, 637
BlsI GCNGC 4 cut(s) 437, 440, 458, 638
Bme1390I CCNGG 4 cut(s) 324, 594, 747, 748
Bme18I GGWCC 2 cut(s) 561, 835
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 5 cut(s) 355, 386, 561, 759, 835
BmiI GGNNCC 3 cut(s) 388, 760, 837
BmrFI CCNGG 4 cut(s) 324, 594, 747, 748
BmsI GCATC 4 cut(s) 484, 623, 682, 747
BpiI GAAGAC 2 cut(s) 77, 358
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 324, 747, 748
BsaAI YACGTR 1 cut(s) 706
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 278, 582
BsaJI CCNNGG 5 cut(s) 322, 430, 573, 592, 746
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 598, 613
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 322, 430, 573, 592, 746
BseGI GGATG 2 cut(s) 697, 823
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 329, 598, 613
BseMII CTCAG 3 cut(s) 94, 165, 663
BseRI GAGGAG 3 cut(s) 281, 434, 614
BseX3I CGGCCG 1 cut(s) 433
BseXI GCAGC 2 cut(s) 425, 623
BsgI GTGCAG 1 cut(s) 622
Bsh1236I CGCG 2 cut(s) 397, 399
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 6 cut(s) 357, 387, 435, 466, 516, 761
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 2 cut(s) 217, 783
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 2 cut(s) 324, 747
BsiWI CGTACG 2 cut(s) 381, 451
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 3 cut(s) 329, 598, 613
BsmAI GTCTC 2 cut(s) 278, 582
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 6 cut(s) 357, 387, 435, 466, 516, 761
Bso31I GGTCTC 2 cut(s) 278, 582
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 3 cut(s) 217, 620, 783
Bsp143I GATC 6 cut(s) 160, 277, 609, 642, 790, 795
BspACI CCGC 6 cut(s) 146, 395, 436, 457, 653, 843
BspANI GGCC 6 cut(s) 357, 387, 435, 466, 516, 761
BspCNI CTCAG 3 cut(s) 93, 164, 664
BspFNI CGCG 2 cut(s) 397, 399
BspLI GGNNCC 3 cut(s) 388, 760, 837
BspMI ACCTGC 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 2 cut(s) 278, 582
BsrBI CCGCTC 1 cut(s) 148
BssECI CCNNGG 5 cut(s) 322, 430, 573, 592, 746
BssMI GATC 6 cut(s) 160, 277, 609, 642, 790, 795
BssNI GRCGYC 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 9 cut(s) 54, 228, 298, 340, 451, 483, 561, 574, 803
Bst6I CTCTTC 2 cut(s) 222, 320
BstACI GRCGYC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 706
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 80, 151, 672
BstDSI CCRYGG 2 cut(s) 430, 573
BstF5I GGATG 2 cut(s) 697, 823
BstFNI CGCG 2 cut(s) 397, 399
BstHHI GCGC 2 cut(s) 399, 628
BstKTI GATC 6 cut(s) 163, 280, 612, 645, 793, 798
BstMAI GTCTC 2 cut(s) 278, 582
BstMBI GATC 6 cut(s) 160, 277, 609, 642, 790, 795
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 3 cut(s) 309, 405, 472
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 4 cut(s) 322, 592, 745, 746
BstUI CGCG 2 cut(s) 397, 399
BstV1I GCAGC 2 cut(s) 425, 623
BstV2I GAAGAC 2 cut(s) 77, 358
BstXI CCANNNNNNTGG 1 cut(s) 706
BstZI CGGCCG 1 cut(s) 433
BsuRI GGCC 6 cut(s) 357, 387, 435, 466, 516, 761
BtgI CCRYGG 2 cut(s) 430, 573
BtgZI GCGATG 2 cut(s) 342, 782
BtsCI GGATG 2 cut(s) 697, 823
BtsIMutI CAGTG 2 cut(s) 336, 672
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 536
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 2 cut(s) 399, 628
Cfr13I GGNCC 5 cut(s) 355, 386, 561, 759, 835
Cfr9I CCCGGG 1 cut(s) 746
CseI GACGC 3 cut(s) 117, 434, 690
Csp6I GTAC 4 cut(s) 382, 452, 583, 604
CviAII CATG 2 cut(s) 421, 568
CviQI GTAC 4 cut(s) 382, 452, 583, 604
DdeI CTNAG 3 cut(s) 80, 151, 672
DpnI GATC 6 cut(s) 162, 279, 611, 644, 792, 797
DpnII GATC 6 cut(s) 160, 277, 609, 642, 790, 795
DraIII CACNNNGTG 1 cut(s) 709
EaeI YGGCCR 2 cut(s) 433, 514
EagI CGGCCG 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 222, 320
EarI CTCTTC 2 cut(s) 222, 320
Ecl136II GAGCTC 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 217, 620
Eco31I GGTCTC 2 cut(s) 278, 582
Eco47I GGWCC 2 cut(s) 561, 835
Eco52I CGGCCG 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 514
Eco72I CACGTG 1 cut(s) 706
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 759
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 217, 620
FaeI CATG 2 cut(s) 424, 571
FaiI YATR 6 cut(s) 76, 134, 422, 551, 569, 813
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 42
FatI CATG 2 cut(s) 420, 567
FauI CCCGC 2 cut(s) 153, 402
FbaI TGATCA 2 cut(s) 277, 790
FblI GTMKAC 2 cut(s) 342, 375
Fnu4HI GCNGC 4 cut(s) 436, 439, 457, 637
FokI GGATG 2 cut(s) 704, 830
FriOI GRGCYC 2 cut(s) 217, 620
Fsp4HI GCNGC 4 cut(s) 436, 439, 457, 637
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 2 cut(s) 398, 627
GluI GCNGC 4 cut(s) 436, 439, 457, 637
HaeIII GGCC 6 cut(s) 357, 387, 435, 466, 516, 761
HapII CCGG 2 cut(s) 324, 747
HgaI GACGC 3 cut(s) 117, 434, 690
HhaI GCGC 2 cut(s) 399, 628
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 2 cut(s) 424, 571
Hin6I GCGC 2 cut(s) 397, 626
HinP1I GCGC 2 cut(s) 397, 626
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 6 cut(s) 155, 372, 377, 469, 662, 676
HpaII CCGG 2 cut(s) 324, 747
HphI GGTGA 4 cut(s) 42, 286, 439, 815
Hpy166II GTNNAC 3 cut(s) 343, 376, 583
Hpy188I TCNGA 6 cut(s) 43, 154, 160, 371, 557, 795
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 343, 376, 583
Hpy99I CGWCG 1 cut(s) 684
HpyAV CCTTC 5 cut(s) 100, 482, 534, 652, 712
HpyCH4III ACNGT 9 cut(s) 54, 228, 298, 340, 451, 483, 561, 574, 803
HpyCH4IV ACGT 2 cut(s) 705, 723
HpyCH4V TGCA 6 cut(s) 4, 303, 351, 475, 639, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 405, 472
HpyF3I CTNAG 3 cut(s) 80, 151, 672
HpySE526I ACGT 2 cut(s) 705, 723
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 2 cut(s) 424, 571
HspAI GCGC 2 cut(s) 397, 626
Ksp22I TGATCA 2 cut(s) 277, 790
Kzo9I GATC 6 cut(s) 160, 277, 609, 642, 790, 795
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 322, 337, 530, 577, 579, 606, 620, 760
Lsp1109I GCAGC 2 cut(s) 425, 623
LweI GCATC 4 cut(s) 484, 623, 682, 747
MaeI CTAG 1 cut(s) 264
MaeII ACGT 2 cut(s) 705, 723
MalI GATC 6 cut(s) 162, 279, 611, 644, 792, 797
MbiI CCGCTC 1 cut(s) 148
MboI GATC 6 cut(s) 160, 277, 609, 642, 790, 795
MboII GAAGA 8 cut(s) 77, 111, 209, 307, 310, 358, 520, 637
MhlI GDGCHC 3 cut(s) 217, 620, 783
MluCI AATT 2 cut(s) 6, 259
MlyI GAGTC 3 cut(s) 371, 381, 478
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 2 cut(s) 572, 704
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 2 cut(s) 324, 747
MspR9I CCNGG 4 cut(s) 324, 594, 747, 748
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 2 cut(s) 397, 399
MwoI GCNNNNNNNGC 3 cut(s) 309, 405, 472
NciI CCSGG 3 cut(s) 324, 747, 748
NdeII GATC 6 cut(s) 160, 277, 609, 642, 790, 795
NlaIII CATG 2 cut(s) 424, 571
NlaIV GGNNCC 3 cut(s) 388, 760, 837
NmeAIII GCCGAG 1 cut(s) 492
NsbI TGCGCA 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 155, 662, 676
Pfl23II CGTACG 2 cut(s) 381, 451
PkrI GCNGC 4 cut(s) 437, 440, 458, 638
PleI GAGTC 3 cut(s) 371, 380, 477
PmaCI CACGTG 1 cut(s) 706
PmlI CACGTG 1 cut(s) 706
PpsI GAGTC 3 cut(s) 371, 380, 477
Ppu21I YACGTR 1 cut(s) 706
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 592
PspCI CACGTG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 592
PspLI CGTACG 2 cut(s) 381, 451
PspN4I GGNNCC 3 cut(s) 388, 760, 837
PspPI GGNCC 5 cut(s) 355, 386, 561, 759, 835
PstNI CAGNNNCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 383, 453, 584, 605
RsaNI GTAC 4 cut(s) 382, 452, 583, 604
RseI CAYNNNNRTG 2 cut(s) 572, 704
SacI GAGCTC 1 cut(s) 217
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 4 cut(s) 436, 439, 457, 637
Sau3AI GATC 6 cut(s) 160, 277, 609, 642, 790, 795
Sau96I GGNCC 5 cut(s) 355, 386, 561, 759, 835
SchI GAGTC 3 cut(s) 371, 381, 478
ScrFI CCNGG 4 cut(s) 324, 594, 747, 748
SduI GDGCHC 3 cut(s) 217, 620, 783
SetI ASST 8 cut(s) 41, 217, 269, 311, 545, 582, 708, 726
SfaNI GCATC 4 cut(s) 484, 623, 682, 747
SinI GGWCC 2 cut(s) 561, 835
SmaI CCCGGG 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 572, 704
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 6, 259
SsiI CCGC 6 cut(s) 146, 395, 436, 457, 653, 843
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 4 cut(s) 322, 592, 745, 746
TaaI ACNGT 9 cut(s) 54, 228, 298, 340, 451, 483, 561, 574, 803
TaiI ACGT 2 cut(s) 708, 726
TaqI TCGA 3 cut(s) 375, 612, 679
TasI AATT 2 cut(s) 6, 259
TauI GCSGC 2 cut(s) 438, 459
TfiI GAWTC 3 cut(s) 155, 662, 676
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 343, 672
TseI GCWGC 2 cut(s) 438, 636
TspDTI ATGAA 2 cut(s) 209, 254
TspGWI ACGGA 2 cut(s) 524, 600
TspMI CCCGGG 1 cut(s) 746
TspRI CASTG 2 cut(s) 343, 672
VpaK11BI GGWCC 2 cut(s) 561, 835
XapI RAATTY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 2 cut(s) 571, 710
XmaI CCCGGG 1 cut(s) 746
XmiI GTMKAC 2 cut(s) 342, 375
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.