AT3G15810

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014447
Physical Location & Seq
Reverse (-)
5347762 .. 5349321
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15810.1

Sequence Viewer

Length: 663 bp
ATGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAAGATGGGAGAAAGAATTGTGGTCGACAAAGCTTATCTTTACCAAGAAGACAAACCACTCACCGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGCTTCGCCGCCTATGACTGCCGTGGTGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGTCCTCATGGACGCGACCGGGAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACACCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGATATTCAGCGTCCGTAGATCGTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGGAGAAGAGTACATTATCGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGAAGAAATGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGGTCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCGATGGGTTTGGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCAGTTGAGATTGGTGATGAACAGGTACACCCTTTTGTAGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

220

Amino Acids

24.82

Weight (kDa)

4.77

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 33 - 199 2.7e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80120 AT3G15810
fragaria_vesca FvH4_6g29760
malus_domestica MD17G1211400.v1.1
prunus_persica Prupe.3G086900_v2.0.a1 Prupe.3G087000_v2.0.a1
pyrus_communis pycom17g21620
rosa_chinensis RchiOBHm_Chr2g0135471
rosa_laevigata RLG00000019467
rosa_multiflora Rmu_sc0008725.1_g000007
rosa_roxburghii Rroxscaffold_2G00109220
rosa_rugosa Rorug02G0324800
rosa_samantha Rh2AG376200 Rh2BG382300 Rh2CG361000 Rh2DG398700
rosa_wichuraiana Rw2G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 63, 495
AccII CGCG 3 cut(s) 233, 500, 572
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 4 cut(s) 370, 410, 469, 642
AfiI CCNNNNNNNGG 2 cut(s) 32, 289
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 2 cut(s) 71, 441
AluI AGCT 2 cut(s) 71, 441
Alw26I GTCTC 5 cut(s) 11, 251, 262, 417, 449
AlwI GGATC 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 2 cut(s) 238, 552
AsuHPI GGTGA 4 cut(s) 91, 173, 620, 641
AvaII GGWCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 7 cut(s) 37, 128, 282, 367, 413, 554, 568
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BcnI CCSGG 2 cut(s) 238, 552
BcoDI GTCTC 5 cut(s) 11, 251, 262, 417, 449
BfaI CTAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 567
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 238, 552
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 238, 552
BmsI GCATC 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpuMI CCSGG 2 cut(s) 238, 552
Bsa29I ATCGAT 1 cut(s) 417
BsaI GGTCTC 2 cut(s) 11, 262
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 289
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 32, 289
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 617
Bsh1236I CGCG 3 cut(s) 233, 500, 572
Bsh1285I CGRYCG 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 129, 237, 551
BslI CCNNNNNNNGG 2 cut(s) 32, 289
BsmAI GTCTC 5 cut(s) 11, 251, 262, 417, 449
Bso31I GGTCTC 2 cut(s) 11, 262
Bsp143I GATC 5 cut(s) 311, 347, 480, 600, 613
Bsp68I TCGCGA 1 cut(s) 572
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 3 cut(s) 233, 500, 572
BspPI GGATC 1 cut(s) 608
BspTNI GGTCTC 2 cut(s) 11, 262
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 5 cut(s) 311, 347, 480, 600, 613
Bst4CI ACNGT 5 cut(s) 103, 256, 366, 472, 608
Bst6I CTCTTC 3 cut(s) 9, 125, 399
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 3 cut(s) 233, 500, 572
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 5 cut(s) 314, 350, 483, 603, 616
BstMAI GTCTC 5 cut(s) 11, 251, 262, 417, 449
BstMBI GATC 5 cut(s) 311, 347, 480, 600, 613
BstMCI CGRYCG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 236, 550
BstUI CGCG 3 cut(s) 233, 500, 572
BstV2I GAAGAC 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 2 cut(s) 147, 587
BtuMI TCGCGA 1 cut(s) 572
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 417
CseI GACGC 4 cut(s) 239, 328, 489, 506
Csp6I GTAC 4 cut(s) 369, 409, 468, 641
CviAII CATG 1 cut(s) 226
CviJI RGCY 4 cut(s) 71, 138, 441, 476
CviKI_1 RGCY 4 cut(s) 71, 138, 441, 476
CviQI GTAC 4 cut(s) 369, 409, 468, 641
DdeI CTNAG 1 cut(s) 477
DpnI GATC 5 cut(s) 313, 349, 482, 602, 615
DpnII GATC 5 cut(s) 311, 347, 480, 600, 613
Eam1104I CTCTTC 3 cut(s) 9, 125, 399
EarI CTCTTC 3 cut(s) 9, 125, 399
Eco31I GGTCTC 2 cut(s) 11, 262
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 166
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 150, 189, 227, 449, 451
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 1 cut(s) 225
FblI GTMKAC 2 cut(s) 63, 495
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 565
GluI GCNGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 567
HapII CCGG 3 cut(s) 129, 237, 551
HgaI GACGC 4 cut(s) 239, 328, 489, 506
HhaI GCGC 1 cut(s) 566
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HincII GTYRAC 2 cut(s) 64, 504
HindII GTYRAC 2 cut(s) 64, 504
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 129, 237, 551
HphI GGTGA 4 cut(s) 91, 173, 620, 641
Hpy166II GTNNAC 7 cut(s) 64, 369, 388, 496, 504, 534, 643
Hpy188I TCNGA 3 cut(s) 316, 324, 362
Hpy188III TCNNGA 3 cut(s) 524, 539, 571
Hpy8I GTNNAC 7 cut(s) 64, 369, 388, 496, 504, 534, 643
Hpy99I CGWCG 2 cut(s) 355, 395
HpyAV CCTTC 3 cut(s) 26, 287, 311
HpyCH4III ACNGT 5 cut(s) 103, 256, 366, 472, 608
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 1 cut(s) 564
Kzo9I GATC 5 cut(s) 311, 347, 480, 600, 613
LpnPI CCDG 9 cut(s) 142, 160, 207, 250, 384, 564, 611, 623, 630
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 510
MalI GATC 5 cut(s) 313, 349, 482, 602, 615
MboI GATC 5 cut(s) 311, 347, 480, 600, 613
MboII GAAGA 6 cut(s) 26, 98, 112, 163, 416, 472
MluCI AATT 2 cut(s) 5, 54
MluI ACGCGT 1 cut(s) 498
MnlI CCTC 2 cut(s) 233, 649
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 258, 546
MspI CCGG 3 cut(s) 129, 237, 551
MspR9I CCNGG 2 cut(s) 238, 552
MvnI CGCG 3 cut(s) 233, 500, 572
NciI CCSGG 2 cut(s) 238, 552
NdeII GATC 5 cut(s) 311, 347, 480, 600, 613
NlaIII CATG 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 282
NruI TCGCGA 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 191
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 4 cut(s) 370, 410, 469, 642
RsaNI GTAC 4 cut(s) 369, 409, 468, 641
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 258, 546
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 5 cut(s) 311, 347, 480, 600, 613
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 238, 552
SetI ASST 7 cut(s) 73, 196, 298, 322, 443, 513, 642
SfaNI GCATC 1 cut(s) 504
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 191
Sse9I AATT 2 cut(s) 5, 54
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 2 cut(s) 236, 550
TaaI ACNGT 5 cut(s) 103, 256, 366, 472, 608
TaiI ACGT 1 cut(s) 513
TaqI TCGA 4 cut(s) 63, 353, 417, 523
TasI AATT 2 cut(s) 5, 54
TatI WGTACW 2 cut(s) 408, 467
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 258, 546
Tru9I TTAA 2 cut(s) 258, 546
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 2 cut(s) 332, 408
VpaK11BI GGWCC 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 538
XmiI GTMKAC 2 cut(s) 63, 495
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.