Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012767

Physical Location & Seq

Genomic Coordinates Forward (+)

30150897 .. 30152614

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGGACGAAACGGGAAACCCTCTGCATATCAAGTCTTTGAATCACATCTCTCTTCTCTGTCGATCCGTCGAGGAATCCATTAGCTTTTACCAAAACGTTTTAGGGTTCCTCCCTATTCGCAGACCTGACTCTTTTGATTTCGATGGCGCGTGGTTGTTTGGACATGGAATTGGGATTCATCTTCTTCAATCTCCTGAACCTGAGAAATTACTCAAGAAAACAGAGATTAATCCCAAGGATAATCACATTTCTTTCCAGTGCGAAAGCATGGAAGCAGTGGAGAAGAAGCTCAAGGAGATGGAGATAGAGTATGTGAGAGCAGTGGTTGAAGAAGGTGGCATCCAAGTGGACCAACTCTTCTTCCACGACCCTGATGCCTTCATGATCGAGATATGCAACTGCGATAGCCTCCCCGTTATCCCTCTCGCTGGAGAAATGGCTCGTTCATGCTCTCGACTTAATATCCGCCAGCTCGTTCAGCCAACTCAGATCCACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

167

Amino Acids

19.03

Weight (kDa)

5.2

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15380 AT1G15380 AT1G80160 AT1G80160
fragaria_vesca	FvH4_6g30160
malus_domestica	MD17G1207700.v1.1
prunus_persica	Prupe.3G082100_v2.0.a1
pyrus_communis	pycom17g21020
rosa_chinensis	RchiOBHm_Chr3g0458691
rosa_laevigata	RLG00000019525
rosa_multiflora	Rmu_sc0001998.1_g000022
rosa_roxburghii	Rroxscaffold_2G00108340
rosa_rugosa	Rorug02G0329400
rosa_samantha	Rh2AG380900 Rh2BG374500 Rh2BG387700 Rh2DG404000
rosa_wichuraiana	Rw2G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	469
AclI	AACGTT	1 cut(s)	99
AclWI	GGATC	2 cut(s)	60, 487
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	43, 191, 332
AluBI	AGCT	3 cut(s)	87, 292, 475
AluI	AGCT	3 cut(s)	87, 292, 475
AlwI	GGATC	2 cut(s)	60, 487
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	352
BccI	CCATC	2 cut(s)	140, 295
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BfaI	CTAG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	110
BmsI	GCATC	2 cut(s)	351, 367
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	200, 278
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	195, 503
BseNI	ACTGG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	65, 387, 492
BspACI	CCGC	1 cut(s)	469
BspCNI	CTCAG	2 cut(s)	196, 502
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	60, 487
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	65, 387, 492
BssT1I	CCWWGG	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	60, 365
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	204, 489
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	68, 390, 495
BstMBI	GATC	3 cut(s)	65, 387, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	342
BtsI	GCAGTG	2 cut(s)	285, 330
BtsIMutI	CAGTG	3 cut(s)	266, 285, 330
Cac8I	GCNNGC	1 cut(s)	473
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	352
CviAII	CATG	4 cut(s)	167, 271, 385, 450
CviJI	RGCY	6 cut(s)	87, 292, 411, 443, 475, 484
CviKI_1	RGCY	6 cut(s)	87, 292, 411, 443, 475, 484
DdeI	CTNAG	2 cut(s)	204, 489
DpnI	GATC	3 cut(s)	67, 389, 494
DpnII	GATC	3 cut(s)	65, 387, 492
Eam1104I	CTCTTC	2 cut(s)	60, 365
EarI	CTCTTC	2 cut(s)	60, 365
EciI	GGCGGA	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	170, 274, 388, 453
FaiI	YATR	7 cut(s)	30, 168, 272, 315, 386, 397, 451
FatI	CATG	4 cut(s)	166, 270, 384, 449
FokI	GGATG	1 cut(s)	329
FspBI	CTAG	1 cut(s)	502
GlaI	GCGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	170, 274, 388, 453
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	4 cut(s)	43, 77, 131, 178
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	5 cut(s)	197, 217, 385, 391, 456
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	329, 391
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	28, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	2 cut(s)	204, 489
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	170, 274, 388, 453
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	65, 387, 492
LpnPI	CCDG	7 cut(s)	141, 210, 216, 272, 387, 417, 485
LweI	GCATC	2 cut(s)	351, 367
MaeI	CTAG	1 cut(s)	502
MaeII	ACGT	1 cut(s)	99
MalI	GATC	3 cut(s)	67, 389, 494
MboI	GATC	3 cut(s)	65, 387, 492
MboII	GAAGA	7 cut(s)	47, 176, 179, 298, 344, 352, 355
MflI	RGATCY	1 cut(s)	492
MluCI	AATT	2 cut(s)	171, 209
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	33, 67, 122, 422, 435
MseI	TTAA	2 cut(s)	231, 462
MslI	CAYNNNNRTG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeII	GATC	3 cut(s)	65, 387, 492
NlaIII	CATG	4 cut(s)	170, 274, 388, 453
NlaIV	GGNNCC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	43, 77, 178
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	231, 462
Sau3AI	GATC	3 cut(s)	65, 387, 492
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	125
SetI	ASST	7 cut(s)	89, 102, 130, 205, 294, 340, 477
SfaNI	GCATC	2 cut(s)	351, 367
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	215, 293
SmoI	CTYRAG	2 cut(s)	215, 293
Sse9I	AATT	2 cut(s)	171, 209
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	5 cut(s)	64, 72, 144, 390, 457
TasI	AATT	2 cut(s)	171, 209
TfiI	GAWTC	3 cut(s)	43, 77, 178
Tru1I	TTAA	2 cut(s)	231, 462
Tru9I	TTAA	2 cut(s)	231, 462
TscAI	CASTG	3 cut(s)	266, 285, 330
TspDTI	ATGAA	4 cut(s)	17, 170, 373, 438
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	3 cut(s)	266, 285, 330
VpaK11BI	GGWCC	1 cut(s)	352
VspI	ATTAAT	1 cut(s)	231
XspI	CTAG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.