Prupe.3G082100_v2.0.a1
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012767
Physical Location & Seq
Reverse (-)
6078878 .. 6080751
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G082100.1

Sequence Viewer

Length: 519 bp
ATGAAGGAAACCATGGGAAACCCTCTTCATCTGAAATCTTTGAACCACATCTCACTCATCTGCCGATCGGTTGAGCAATCCATTGATTTTTACCAGAATGTTCTTGGGTTTGTCCCAATCAGGAGGCCTGGATCTTTTAATTTTGATGGTGCATGGCTATTTGGATATGGGATTGGAATTCATCTTTTGCAATCGGAGGACCCGGAGAGCATGCCCAAGAAAACTGAGATTAATCCCAAGGATAATCATATTTCTTTCCAGTGTGAGAGCATGGGGGCTGTGGAGAAGAAACTCAAGGAGATGGAGCTCAAGTACAAGCGAGCCATGGTGGAGGAAGGTGGCATCCACGTTGATCAATTGTTCTTCCACGACCCGGATGGCTTCATGATCGAAATATGCGACTGCGACAACCTCCCAGTGATCCCTATCGCCGGGGAGATAGCCCGGTCATGCTCCCTCGTAAACCGGCCTATGTTGCAGCAGAAGCAGCAGCAGCAGCTAAGATTGTTGCAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase

Protein Analysis

173

Amino Acids

19.67

Weight (kDa)

5.85

Isoelectric Point (pI)

67.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15380 AT1G15380 AT1G80160 AT1G80160
fragaria_vesca FvH4_6g30160
malus_domestica MD17G1207700.v1.1
prunus_persica Prupe.3G082100_v2.0.a1
pyrus_communis pycom17g21020
rosa_chinensis RchiOBHm_Chr3g0458691
rosa_laevigata RLG00000019525
rosa_multiflora Rmu_sc0001998.1_g000022
rosa_roxburghii Rroxscaffold_2G00108340
rosa_rugosa Rorug02G0329400
rosa_samantha Rh2AG380900 Rh2BG374500 Rh2BG387700 Rh2DG404000
rosa_wichuraiana Rw2G031150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 139, 415
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 373, 431
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 307, 499
AluI AGCT 2 cut(s) 307, 499
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 2 cut(s) 139, 415
AoxI GGCC 2 cut(s) 125, 467
ApeKI GCWGC 6 cut(s) 478, 487, 490, 493, 496, 511
ApoI RAATTY 1 cut(s) 177
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 4 cut(s) 203, 374, 433, 445
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 490, 499, 502, 505, 508
BccI CCATC 3 cut(s) 140, 295, 371
BciT130I CCWGG 1 cut(s) 129
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 4 cut(s) 203, 374, 433, 445
BisI GCNGC 6 cut(s) 479, 488, 491, 494, 497, 512
BlsI GCNGC 6 cut(s) 480, 489, 492, 495, 498, 513
Bme1390I CCNGG 5 cut(s) 129, 203, 374, 433, 445
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 5 cut(s) 129, 203, 374, 433, 445
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 278, 293
BpuMI CCSGG 4 cut(s) 203, 374, 433, 445
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 4 cut(s) 12, 237, 324, 432
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 431
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 2 cut(s) 259, 416
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 12, 237, 324, 432
BseGI GGATG 2 cut(s) 342, 382
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 373, 431
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 259, 416
BseXI GCAGC 5 cut(s) 490, 499, 502, 505, 508
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 127, 469
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 5 cut(s) 203, 374, 432, 445, 466
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 373, 431
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 127, 469
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 5 cut(s) 65, 131, 352, 387, 420
Bsp19I CCATGG 2 cut(s) 12, 324
BspANI GGCC 2 cut(s) 127, 469
BspCNI CTCAG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 2 cut(s) 139, 415
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 2 cut(s) 259, 416
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 4 cut(s) 12, 237, 324, 432
BssMI GATC 5 cut(s) 65, 131, 352, 387, 420
BssT1I CCWWGG 3 cut(s) 12, 237, 324
Bst2UI CCWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 212, 321
BstDEI CTNAG 2 cut(s) 225, 500
BstDSI CCRYGG 2 cut(s) 12, 324
BstF5I GGATG 2 cut(s) 342, 382
BstKTI GATC 5 cut(s) 68, 134, 355, 390, 423
BstMBI GATC 5 cut(s) 65, 131, 352, 387, 420
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 5 cut(s) 475, 484, 487, 493, 496
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 5 cut(s) 127, 201, 372, 431, 443
BstV1I GCAGC 5 cut(s) 490, 499, 502, 505, 508
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 127, 469
BtgI CCRYGG 2 cut(s) 12, 324
BtsCI GGATG 2 cut(s) 342, 382
BtsIMutI CAGTG 2 cut(s) 266, 423
Cac8I GCNNGC 2 cut(s) 212, 321
CciI TCATGA 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 313
CviAII CATG 7 cut(s) 13, 153, 211, 271, 325, 385, 450
CviJI RGCY 9 cut(s) 127, 157, 278, 307, 323, 381, 443, 469, 499
CviKI_1 RGCY 9 cut(s) 127, 157, 278, 307, 323, 381, 443, 469, 499
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 225, 500
DpnI GATC 5 cut(s) 67, 133, 354, 389, 422
DpnII GATC 5 cut(s) 65, 131, 352, 387, 420
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 3 cut(s) 12, 237, 324
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 3 cut(s) 12, 237, 324
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 3 cut(s) 12, 237, 324
FaeI CATG 7 cut(s) 16, 156, 214, 274, 328, 388, 453
FaqI GGGAC 1 cut(s) 98
FatI CATG 7 cut(s) 12, 152, 210, 270, 324, 384, 449
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 6 cut(s) 479, 488, 491, 494, 497, 512
FokI GGATG 2 cut(s) 329, 389
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 6 cut(s) 479, 488, 491, 494, 497, 512
GluI GCNGC 6 cut(s) 479, 488, 491, 494, 497, 512
HaeIII GGCC 2 cut(s) 127, 469
HapII CCGG 5 cut(s) 203, 374, 432, 445, 466
Hin1II CATG 7 cut(s) 16, 156, 214, 274, 328, 388, 453
HpaII CCGG 5 cut(s) 203, 374, 432, 445, 466
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 33, 196
Hpy188III TCNNGA 2 cut(s) 121, 385
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 152, 190, 478, 511
HpyF10VI GCNNNNNNNGC 5 cut(s) 475, 484, 487, 493, 496
HpyF3I CTNAG 2 cut(s) 225, 500
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 7 cut(s) 16, 156, 214, 274, 328, 388, 453
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 5 cut(s) 65, 131, 352, 387, 420
LmnI GCTCC 2 cut(s) 304, 458
Lsp1109I GCAGC 5 cut(s) 490, 499, 502, 505, 508
LweI GCATC 1 cut(s) 351
MaeII ACGT 1 cut(s) 348
MalI GATC 5 cut(s) 67, 133, 354, 389, 422
MboI GATC 5 cut(s) 65, 131, 352, 387, 420
MboII GAAGA 3 cut(s) 17, 298, 355
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 139, 177, 356
MnlI CCTC 6 cut(s) 33, 117, 190, 325, 422, 467
MseI TTAA 2 cut(s) 138, 231
MspI CCGG 5 cut(s) 203, 374, 432, 445, 466
MspR9I CCNGG 5 cut(s) 129, 203, 374, 433, 445
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 475, 484, 487, 493, 496
NciI CCSGG 4 cut(s) 203, 374, 433, 445
NcoI CCATGG 2 cut(s) 12, 324
NdeII GATC 5 cut(s) 65, 131, 352, 387, 420
NlaIII CATG 7 cut(s) 16, 156, 214, 274, 328, 388, 453
NlaIV GGNNCC 1 cut(s) 201
NspI RCATGY 1 cut(s) 214
PaeI GCATGC 1 cut(s) 214
PagI TCATGA 1 cut(s) 384
PceI AGGCCT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PkrI GCNGC 6 cut(s) 480, 489, 492, 495, 498, 513
Ple19I CGATCG 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PsuI RGATCY 1 cut(s) 131
PvuI CGATCG 1 cut(s) 68
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 138, 231
SatI GCNGC 6 cut(s) 479, 488, 491, 494, 497, 512
Sau3AI GATC 5 cut(s) 65, 131, 352, 387, 420
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 5 cut(s) 129, 203, 374, 433, 445
SduI GDGCHC 1 cut(s) 309
SetI ASST 5 cut(s) 309, 340, 351, 414, 501
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 293, 308
SmoI CTYRAG 2 cut(s) 293, 308
SphI GCATGC 1 cut(s) 214
Sse9I AATT 3 cut(s) 139, 177, 356
SseBI AGGCCT 1 cut(s) 127
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 5 cut(s) 127, 201, 372, 431, 443
StyI CCWWGG 3 cut(s) 12, 237, 324
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 390
TasI AATT 3 cut(s) 139, 177, 356
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 2 cut(s) 138, 231
Tru9I TTAA 2 cut(s) 138, 231
TscAI CASTG 2 cut(s) 266, 423
TseI GCWGC 6 cut(s) 478, 487, 490, 493, 496, 511
TspDTI ATGAA 4 cut(s) 17, 17, 170, 373
TspRI CASTG 2 cut(s) 266, 423
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 2 cut(s) 101, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.