Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012767

Physical Location & Seq

Genomic Coordinates Reverse (-)

40505747 .. 40506501

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGATAGGTTGAAGGAGGAGATGCACAAATCCCAACATTTCAGTGTCTATTACACTAGCCCTGGTGTTTGTGAGGTTCGATCTGACTTTTCTTGTGAAGTTAACATTTCCAATCATTCATGTTCATGTGTGAAATGGAAAATTAATTGCTTTCCTTGTCATCATGGCCTTACTGCAATACAAGCTGCCTCTGAAAATGTCTATGATTATATTGATAAGTACTTTCGTGTTGATACGTACAAGAGCTATAGTTTTTCTATTCAGCCGATAACTAATGTTAATCTGTCTTCTTCTGAATCTGCTACTGACTTTATATTACCTCCCCCTGTGAAGAGGCCACCCAAGAGGCCTAGGGTGAAGCGGTTCAAGTCTAATGGAGAGGTTGAAAAGAAGCTAATTCGTTGCGGCCGTTGTGGCAAAATGGGCAGTCATAACAAGTTGAGCTGCACAGAACCTCTGGTTCAACAGAAGTACATGTTTCTGGAAAGGATTGTTAGCAGAAGGAAAGTTACAAGCAGGGAAGAAATGCAGTACAAAAGCCAAGAGACCTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

186

Amino Acids

21.72

Weight (kDa)

9.18

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15380 AT1G15380 AT1G80160 AT1G80160
fragaria_vesca	FvH4_6g30160
malus_domestica	MD17G1207700.v1.1
prunus_persica	Prupe.3G082100_v2.0.a1
pyrus_communis	pycom17g21020
rosa_chinensis	RchiOBHm_Chr3g0458691
rosa_laevigata	RLG00000019525
rosa_multiflora	Rmu_sc0001998.1_g000022
rosa_roxburghii	Rroxscaffold_2G00108340
rosa_rugosa	Rorug02G0329400
rosa_samantha	Rh2AG380900 Rh2BG374500 Rh2BG387700 Rh2DG404000
rosa_wichuraiana	Rw2G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	364, 408
AcoI	YGGCCR	1 cut(s)	409
AfaI	GTAC	4 cut(s)	224, 242, 476, 536
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	16, 370, 389, 467
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	4 cut(s)	188, 249, 397, 447
AluI	AGCT	4 cut(s)	188, 249, 397, 447
Alw26I	GTCTC	1 cut(s)	542
AoxI	GGCC	4 cut(s)	169, 338, 350, 409
ApeKI	GCWGC	2 cut(s)	188, 447
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	365
AspA2I	CCTAGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	370
AvrII	CCTAGG	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	496, 528
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	175, 434
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	60, 354
BfmI	CTRYAG	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	189, 409, 448
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	190, 410, 449
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	64, 353
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	64, 353
BseRI	GAGGAG	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	175, 434
BsgI	GTGCAG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	4 cut(s)	171, 340, 352, 411
BsiEI	CGRYCG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	4 cut(s)	171, 340, 352, 411
Bso31I	GGTCTC	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	83
BspACI	CCGC	2 cut(s)	364, 408
BspANI	GGCC	4 cut(s)	171, 340, 352, 411
BspTNI	GGTCTC	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	64, 353
BssMI	GATC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	240
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	83
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 417, 426
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	250
BstSNI	TACGTA	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	175, 434
BstV2I	GAAGAC	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	409
BsuRI	GGCC	4 cut(s)	171, 340, 352, 411
BtsIMutI	CAGTG	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	223, 241, 475, 535
CviAII	CATG	4 cut(s)	123, 129, 167, 478
CviQI	GTAC	4 cut(s)	223, 241, 475, 535
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	409
EagI	CGGCCG	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EclXI	CGGCCG	1 cut(s)	409
Eco105I	TACGTA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	542
Eco52I	CGGCCG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	126, 132, 170, 481
FaiI	YATR	9 cut(s)	124, 130, 168, 207, 213, 252, 317, 435, 479
FatI	CATG	4 cut(s)	122, 128, 166, 477
Fnu4HI	GCNGC	3 cut(s)	189, 409, 448
Fsp4HI	GCNGC	3 cut(s)	189, 409, 448
FspBI	CTAG	2 cut(s)	60, 354
GluI	GCNGC	3 cut(s)	189, 409, 448
HaeIII	GGCC	4 cut(s)	171, 340, 352, 411
Hin1II	CATG	4 cut(s)	126, 132, 170, 481
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	299
HpaI	GTTAAC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	88, 196, 298
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	10, 498
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	28, 179, 450, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 417, 426
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	126, 132, 170, 481
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	51, 78, 342, 446, 470, 505
Lsp1109I	GCAGC	2 cut(s)	175, 434
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	60, 354
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	282, 285, 346, 536
MluCI	AATT	3 cut(s)	144, 148, 399
MnlI	CCTC	8 cut(s)	13, 70, 202, 330, 333, 342, 376, 468
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	105, 147, 282
MslI	CAYNNNNRTG	2 cut(s)	45, 127
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	185, 417, 426
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	4 cut(s)	126, 132, 170, 481
NspI	RCATGY	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	190, 410, 449
Ppu21I	YACGTR	1 cut(s)	240
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
RsaI	GTAC	4 cut(s)	224, 242, 476, 536
RsaNI	GTAC	4 cut(s)	223, 241, 475, 535
RseI	CAYNNNNRTG	2 cut(s)	45, 127
SaqAI	TTAA	3 cut(s)	105, 147, 282
SatI	GCNGC	3 cut(s)	189, 409, 448
Sau3AI	GATC	1 cut(s)	83
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	45, 127
SnaBI	TACGTA	1 cut(s)	240
Sse9I	AATT	3 cut(s)	144, 148, 399
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	364, 408
SspMI	CTAG	2 cut(s)	60, 354
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	353
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	144, 148, 399
TatI	WGTACW	3 cut(s)	222, 474, 534
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	3 cut(s)	105, 147, 282
Tru9I	TTAA	3 cut(s)	105, 147, 282
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	2 cut(s)	188, 447
TspDTI	ATGAA	2 cut(s)	111, 117
TspRI	CASTG	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	147
XceI	RCATGY	1 cut(s)	481
XmaJI	CCTAGG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	60, 354
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.