RchiOBHm_Chr3g0458691
ERF Family

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
7310873 .. 7311488
616 bp
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UTR
Exon/CDS
Intron
PRQ42532

Sequence Viewer

Length: 363 bp
ATGTTCCCTTCTGAATCTCTTGCTTCTCTGCCTCTTTCTCTTTCTCTCTTGTTTCTGATCATAATGAAGGAAATCGTGGAAAACCTTCTTCATCTAAAATGTTTGAACCACATCTCACTTATCTGCAGATCAGTTGAAGAATCCATTGATTTTTACCAAAATGTTCTTGGGTTTGTTTCAGTCAGAATGCCTGGATCATTTGATTTTTATGGGGCATCGTTATTCGGGTATAGAATTGGAATCAGAATCCATCTTTTGCAATCTGAGAGTCGAAAAATATGCCCAAGAAAGCTAAAATTAAAACCGAAGGGGGGGAAGTGGATTGAGAAGCGGAGGCAGCCGAGGATTGTTAGGTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.99

Weight (kDa)

10.02

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012767)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15380 AT1G15380 AT1G80160 AT1G80160
fragaria_vesca FvH4_6g30160
malus_domestica MD17G1207700.v1.1
prunus_persica Prupe.3G082100_v2.0.a1
pyrus_communis pycom17g21020
rosa_chinensis RchiOBHm_Chr3g0458691
rosa_laevigata RLG00000019525
rosa_multiflora Rmu_sc0001998.1_g000022
rosa_roxburghii Rroxscaffold_2G00108340
rosa_rugosa Rorug02G0329400
rosa_samantha Rh2AG380900 Rh2BG374500 Rh2BG387700 Rh2DG404000
rosa_wichuraiana Rw2G031150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 331
AclWI GGATC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 106, 137
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AlwI GGATC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 57, 128, 194
BspACI CCGC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 3 cut(s) 57, 128, 194
Bst2UI CCWGG 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 264
BstKTI GATC 3 cut(s) 60, 131, 197
BstMBI GATC 3 cut(s) 57, 128, 194
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 349
CviJI RGCY 2 cut(s) 292, 340
CviKI_1 RGCY 2 cut(s) 292, 340
DdeI CTNAG 1 cut(s) 264
DpnI GATC 3 cut(s) 59, 130, 196
DpnII GATC 3 cut(s) 57, 128, 194
EcoRII CCWGG 1 cut(s) 190
FaiI YATR 4 cut(s) 62, 210, 231, 280
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 338
HinfI GANTC 5 cut(s) 14, 140, 240, 246, 268
Hpy188I TCNGA 5 cut(s) 13, 57, 185, 245, 265
HpyAV CCTTC 4 cut(s) 18, 61, 95, 301
HpyCH4V TGCA 2 cut(s) 126, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 128, 194
LpnPI CCDG 2 cut(s) 177, 204
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 224
MalI GATC 3 cut(s) 59, 130, 196
MboI GATC 3 cut(s) 57, 128, 194
MboII GAAGA 2 cut(s) 80, 149
MluCI AATT 2 cut(s) 234, 296
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 3 cut(s) 42, 327, 336
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 3 cut(s) 57, 128, 194
PctI GAATGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 4 cut(s) 14, 140, 240, 246
PkrI GCNGC 1 cut(s) 339
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PstI CTGCAG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 3 cut(s) 57, 128, 194
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 192
SetI ASST 3 cut(s) 87, 294, 356
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 124
SgeI CNNG 9 cut(s) 32, 61, 88, 179, 203, 204, 238, 297, 354
Sse9I AATT 2 cut(s) 234, 296
SsiI CCGC 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 190
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 234, 296
TfiI GAWTC 4 cut(s) 14, 140, 240, 246
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseI GCWGC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 80, 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.