AT1G80630

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016058
Physical Location & Seq
Reverse (-)
30308696 .. 30310667
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80630.1

Sequence Viewer

Length: 1737 bp
ATGGATTTACCTGAAGAATGTTGGGAATTAATCTGCAAAGCTATCGATGAAGACGATTATCGATTCCTGGAATCTGTTTCACTCGTATCAACCTTGTTCCTCTCAATCACCAATCGCGTTCGCTCTACTTTCGTCGTCACCGATCGAGCTGTTCCTTTACTCAATCGTCATCTCCTTCGATTCCGCAACTTGAAGCGAATCAGGTTCTCTGATTTCACTCAGGATCTCAATTCGATTCTTCTCCAGGTTTCTCGTTCCGGTTTGGATTTCGAATCGGTAGATGTCTCGCAAACGCGCTATTTCCCAGATTTTGAGATGAAGAATGTCAAGGAATTGAAATGTTATGGAGTTGGAGGTTTTAGTGATAGCGATCTGGTTTCCATCGGAGTGAATTTTCCGTTGCTAGAGAAGCTGGACATTAGCTATCCTAATTCAAGTCCGAGTCGAGTCTCTGATTCTGGTGTTATCGAGCTTTCCTCGAATCTCAAAGGTTTGTTGAAGATTAACATTTCTGGTAATAGTTTCATCACAGATAAATCTTTGATTGCTCTCTCGCAGAATTGTCTTCTCTTGAGAGAGATAATCTTCCGTGACTGTGATTTCATTTCGTCGGATTGCATCAAATTCGTTCTTCGCAATTCCCGTAACTTGGAGTCTCTTGCGATCAACGGAATCGGATTGAGACCGAGGGAGTCTTTGTTAACCGATGCGTTCTTGTTTGCTCGTTGTTTGACTGAGCTTGATCTTTCGGATTCGTTTTTGTCTGATGACTTGCTCTGTTTGATTGCTAGTGCTAAGTTACCTCTAAAGAAGCTTCTTCTCTCCGATTGCCACGGTTTTACTTTTGATGGGATCTTGTATCTGCTGGACAAGTACCAATCACTAGTTCACTTGAACCTCAAAGGAGCAAATTTCCTCTCTGATGAGATGGTTATGAAATTAGGGATGTTCTTTCGGCGTTTAACCTTTTTGAATCTGAGTTTCTGTTCCAAGTTAACTGGTCTAGCATTCTTTAGTATTATTGAAAGATGTGTTTCCCTGAGGTGCATGATAATGGTAGGGACGAACTTTGGAGTGGAAGAATATACCAAGGATACGAAGGATTTCAAGTCAGGGGTCAAGTTTTTGTACTTATCTAGAAACCACAATTTGCTCGATGAGTGTCTCGAAAAGATATCACGGCATTGCCCTTTTATAGAAAGTCTTGACGTAGCTCAGTGTCCTGGCATCACGAGAGATGGGATTCTTGAAGTTTGGAGGAATTGTGGCAAGCTAAGATCTTTGGACATCAGCAGATGTACGGGCATAAAGAGTCTTGGTGTAGTAGACTTTGAGCTTCCAAAGTTGGAGTCTTTGCGAGCATGTGGAACTTGGATCGACGATGAAGCCTTAGATATGATCAGCAAAAAGTGTCGAGGGTTGTTGCATCTTGATCTGCAAGGATGCTTGAATGTGAGTTCAAGAGGGGTGAAGGAAGTTGTGCAGAGCTGCATACGTTTAAGAGAGATTAACCTCAAGTATTGTGAAGCTGATAAGAAAATGTACACTTGGATGGTTTTTGCAAATCCATCTCTTAGGAAAATCGTACCGCCATGTGGGTTTTCTCCAACTAAAGCACTCAAGAACTTCTTTCTGCGTCATGGATGTGTAGTCTCCCAGGATTCTTCTGAGTTGCTTTCTATAGCATACCGTGCCAATGGAAGAGATGATGACACATTGACTAGACTGATTATTTGA

Protein Analysis

578

Amino Acids

65.5

Weight (kDa)

7.36

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016058)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80630
fragaria_vesca FvH4_6g28940
prunus_persica Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis pycom17g22470
rosa_chinensis RchiOBHm_Chr2g0133501
rosa_laevigata RLG00000019348
rosa_multiflora Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii Rroxscaffold_2G00111020
rosa_rugosa Rorug02G0312400
rosa_samantha Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1326
AccII CGCG 2 cut(s) 117, 295
AciI CCGC 2 cut(s) 184, 1589
AclWI GGATC 3 cut(s) 231, 860, 1382
AcsI RAATTY 3 cut(s) 391, 623, 910
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 5 cut(s) 875, 1130, 1300, 1544, 1587
AfiI CCNNNNNNNGG 2 cut(s) 649, 1595
AhlI ACTAGT 1 cut(s) 883
AjnI CCWGG 4 cut(s) 66, 243, 1222, 1656
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
Alw26I GTCTC 6 cut(s) 289, 454, 660, 676, 1169, 1657
AlwI GGATC 3 cut(s) 231, 860, 1382
ApeKI GCWGC 1 cut(s) 1488
ApoI RAATTY 3 cut(s) 391, 623, 910
ArsI GACNNNNNNTTYG 3 cut(s) 1334, 1366, 1716
AseI ATTAAT 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 100, 130, 1480
AsuII TTCGAA 1 cut(s) 270
AxyI CCTNAGG 1 cut(s) 1040
BauI CACGAG 1 cut(s) 1231
BbsI GAAGAC 2 cut(s) 57, 557
BbvI GCAGC 1 cut(s) 1475
BccI CCATC 6 cut(s) 389, 842, 922, 1232, 1546, 1576
BceAI ACGGC 1 cut(s) 1196
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 607, 641
BciT130I CCWGG 4 cut(s) 68, 245, 1224, 1658
BciVI GTATCC 1 cut(s) 1087
BclI TGATCA 1 cut(s) 1398
BcoDI GTCTC 6 cut(s) 289, 454, 660, 676, 1169, 1657
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 6 cut(s) 404, 789, 884, 1004, 1137, 1722
BfmI CTRYAG 1 cut(s) 1680
BfuI GTATCC 1 cut(s) 1087
BglII AGATCT 1 cut(s) 1277
BisI GCNGC 1 cut(s) 1489
BlsI GCNGC 1 cut(s) 1490
Bme1390I CCNGG 4 cut(s) 68, 245, 1224, 1658
BmrFI CCNGG 4 cut(s) 68, 245, 1224, 1658
BmsI GCATC 5 cut(s) 627, 697, 1236, 1433, 1435
BpiI GAAGAC 2 cut(s) 57, 557
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 3 cut(s) 592, 1499, 1604
Bsa29I ATCGAT 2 cut(s) 45, 61
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 4 cut(s) 686, 832, 1089, 1656
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 683, 713, 1249, 1279
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 1595
Bse1I ACTGG 1 cut(s) 1003
Bse21I CCTNAGG 1 cut(s) 1040
Bse3DI GCAATG 1 cut(s) 1183
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 4 cut(s) 68, 245, 1224, 1658
BseCI ATCGAT 2 cut(s) 45, 61
BseDI CCNNGG 4 cut(s) 686, 832, 1089, 1656
BseGI GGATG 4 cut(s) 951, 1448, 1557, 1649
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 649, 1595
BseMI GCAATG 1 cut(s) 1183
BseMII CTCAG 6 cut(s) 233, 726, 968, 1031, 1229, 1659
BseNI ACTGG 1 cut(s) 1003
BseXI GCAGC 1 cut(s) 1475
BsgI GTGCAG 1 cut(s) 1502
Bsh1236I CGCG 2 cut(s) 117, 295
Bsh1285I CGRYCG 1 cut(s) 145
BshVI ATCGAT 2 cut(s) 45, 61
BsiEI CGRYCG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 1075
BslI CCNNNNNNNGG 2 cut(s) 649, 1595
BsmAI GTCTC 6 cut(s) 289, 454, 660, 676, 1169, 1657
BsmFI GGGAC 1 cut(s) 1075
BsmI GAATGC 1 cut(s) 1007
Bso31I GGTCTC 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 270
Bsp1407I TGTACA 1 cut(s) 1542
BspACI CCGC 2 cut(s) 184, 1589
BspCNI CTCAG 6 cut(s) 232, 727, 969, 1032, 1228, 1660
BspDI ATCGAT 2 cut(s) 45, 61
BspFNI CGCG 2 cut(s) 117, 295
BspPI GGATC 3 cut(s) 231, 860, 1382
BspT104I TTCGAA 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 1183
BsrGI TGTACA 1 cut(s) 1542
BsrI ACTGG 1 cut(s) 1003
BssECI CCNNGG 4 cut(s) 686, 832, 1089, 1656
BssSI CACGAG 1 cut(s) 1231
BssT1I CCWWGG 1 cut(s) 1089
Bst2BI CACGAG 1 cut(s) 1231
Bst2UI CCWGG 4 cut(s) 68, 245, 1224, 1658
Bst4CI ACNGT 3 cut(s) 596, 836, 1691
Bst6I CTCTTC 1 cut(s) 1696
BstAPI GCANNNNNTGC 1 cut(s) 1691
BstAUI TGTACA 1 cut(s) 1542
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 1271, 1359
BstDSI CCRYGG 1 cut(s) 832
BstF5I GGATG 4 cut(s) 951, 1448, 1557, 1649
BstFNI CGCG 2 cut(s) 117, 295
BstHHI GCGC 1 cut(s) 297
BstMAI GTCTC 6 cut(s) 289, 454, 660, 676, 1169, 1657
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 409, 1691
BstNI CCWGG 4 cut(s) 68, 245, 1224, 1658
BstNSI RCATGY 1 cut(s) 1365
BstSCI CCNGG 4 cut(s) 66, 243, 1222, 1656
BstSFI CTRYAG 1 cut(s) 1680
BstUI CGCG 2 cut(s) 117, 295
BstV1I GCAGC 1 cut(s) 1475
BstV2I GAAGAC 2 cut(s) 57, 557
BstX2I RGATCY 3 cut(s) 223, 852, 1277
BstYI RGATCY 3 cut(s) 223, 852, 1277
Bsu15I ATCGAT 2 cut(s) 45, 61
Bsu36I CCTNAGG 1 cut(s) 1040
BsuI GTATCC 1 cut(s) 1087
BsuTUI ATCGAT 2 cut(s) 45, 61
BtgI CCRYGG 1 cut(s) 832
BtsCI GGATG 4 cut(s) 951, 1448, 1557, 1649
BtsIMutI CAGTG 1 cut(s) 1223
Cac8I GCNNGC 2 cut(s) 1271, 1359
CfoI GCGC 1 cut(s) 297
ClaI ATCGAT 2 cut(s) 45, 61
CseI GACGC 1 cut(s) 1625
Csp6I GTAC 5 cut(s) 874, 1129, 1299, 1543, 1586
CviAII CATG 4 cut(s) 1048, 1362, 1593, 1640
CviQI GTAC 5 cut(s) 874, 1129, 1299, 1543, 1586
Eam1104I CTCTTC 1 cut(s) 1696
EarI CTCTTC 1 cut(s) 1696
Eco130I CCWWGG 1 cut(s) 1089
Eco31I GGTCTC 1 cut(s) 676
Eco32I GATATC 1 cut(s) 1176
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 1040
EcoRII CCWGG 4 cut(s) 66, 243, 1222, 1656
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 1 cut(s) 1089
ErhI CCWWGG 1 cut(s) 1089
FaeI CATG 4 cut(s) 1051, 1365, 1596, 1643
FalI AAGNNNNNCTT 2 cut(s) 1613, 1645
FaqI GGGAC 1 cut(s) 1075
FatI CATG 4 cut(s) 1047, 1361, 1592, 1639
FbaI TGATCA 1 cut(s) 1398
FblI GTMKAC 1 cut(s) 1326
Fnu4HI GCNGC 1 cut(s) 1489
FokI GGATG 4 cut(s) 958, 1455, 1564, 1656
Fsp4HI GCNGC 1 cut(s) 1489
FspBI CTAG 6 cut(s) 404, 789, 884, 1004, 1137, 1722
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 1489
GsuI CTGGAG 1 cut(s) 227
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 1625
HhaI GCGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 1051, 1365, 1596, 1643
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 702, 996
HindII GTYRAC 2 cut(s) 702, 996
HindIII AAGCTT 1 cut(s) 812
HpaI GTTAAC 2 cut(s) 702, 996
HpaII CCGG 1 cut(s) 258
HphI GGTGA 3 cut(s) 100, 130, 1480
Hpy166II GTNNAC 5 cut(s) 702, 889, 996, 1327, 1545
Hpy8I GTNNAC 5 cut(s) 702, 889, 996, 1327, 1545
Hpy99I CGWCG 3 cut(s) 137, 613, 1382
HpyAV CCTTC 3 cut(s) 185, 1093, 1465
HpyCH4III ACNGT 3 cut(s) 596, 836, 1691
HpyCH4IV ACGT 2 cut(s) 1209, 1495
HpyCH4V TGCA 8 cut(s) 36, 618, 1047, 1426, 1438, 1483, 1491, 1562
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 1691
HpySE526I ACGT 2 cut(s) 1209, 1495
Hsp92II CATG 4 cut(s) 1051, 1365, 1596, 1643
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 1398
KspAI GTTAAC 2 cut(s) 702, 996
LmnI GCTCC 1 cut(s) 905
Lsp1109I GCAGC 1 cut(s) 1475
LweI GCATC 5 cut(s) 627, 697, 1236, 1433, 1435
MaeI CTAG 6 cut(s) 404, 789, 884, 1004, 1137, 1722
MaeII ACGT 2 cut(s) 1209, 1495
MaeIII GTNAC 4 cut(s) 136, 590, 644, 798
MflI RGATCY 3 cut(s) 223, 852, 1277
MlyI GAGTC 6 cut(s) 451, 456, 662, 701, 1321, 1358
MmeI TCCRAC 4 cut(s) 331, 591, 1326, 1631
MroXI GAANNNNTTC 1 cut(s) 1103
MseI TTAA 7 cut(s) 29, 504, 701, 962, 995, 1499, 1509
MslI CAYNNNNRTG 4 cut(s) 386, 1052, 1550, 1644
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 4 cut(s) 68, 245, 1224, 1658
Mva1269I GAATGC 1 cut(s) 1007
MvaI CCWGG 4 cut(s) 68, 245, 1224, 1658
MvnI CGCG 2 cut(s) 117, 295
MwoI GCNNNNNNNGC 2 cut(s) 409, 1691
NlaIII CATG 4 cut(s) 1051, 1365, 1596, 1643
NmuCI GTSAC 2 cut(s) 136, 590
NspI RCATGY 1 cut(s) 1365
NspV TTCGAA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 138, 640
PctI GAATGC 1 cut(s) 1007
PdmI GAANNNNTTC 1 cut(s) 1103
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 1490
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 6 cut(s) 450, 455, 661, 700, 1320, 1357
PpsI GAGTC 6 cut(s) 450, 455, 661, 700, 1320, 1357
PshBI ATTAAT 1 cut(s) 29
Psp6I CCWGG 4 cut(s) 66, 243, 1222, 1656
PspGI CCWGG 4 cut(s) 66, 243, 1222, 1656
PsuI RGATCY 3 cut(s) 223, 852, 1277
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 5 cut(s) 875, 1130, 1300, 1544, 1587
RsaNI GTAC 5 cut(s) 874, 1129, 1299, 1543, 1586
RseI CAYNNNNRTG 4 cut(s) 386, 1052, 1550, 1644
SaqAI TTAA 7 cut(s) 29, 504, 701, 962, 995, 1499, 1509
SatI GCNGC 1 cut(s) 1489
SchI GAGTC 6 cut(s) 451, 456, 662, 701, 1321, 1358
ScrFI CCNGG 4 cut(s) 68, 245, 1224, 1658
SfaNI GCATC 5 cut(s) 627, 697, 1236, 1433, 1435
SfcI CTRYAG 1 cut(s) 1680
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 4 cut(s) 386, 1052, 1550, 1644
SmlI CTYRAG 3 cut(s) 571, 1514, 1619
SmoI CTYRAG 3 cut(s) 571, 1514, 1619
SpeI ACTAGT 1 cut(s) 883
SsiI CCGC 2 cut(s) 184, 1589
SspMI CTAG 6 cut(s) 404, 789, 884, 1004, 1137, 1722
StyD4I CCNGG 4 cut(s) 66, 243, 1222, 1656
StyI CCWWGG 1 cut(s) 1089
TaaI ACNGT 3 cut(s) 596, 836, 1691
TaiI ACGT 2 cut(s) 1212, 1498
TaqII GACCGA 1 cut(s) 700
TatI WGTACW 2 cut(s) 1128, 1542
Tru1I TTAA 7 cut(s) 29, 504, 701, 962, 995, 1499, 1509
Tru9I TTAA 7 cut(s) 29, 504, 701, 962, 995, 1499, 1509
TscAI CASTG 1 cut(s) 1223
TseFI GTSAC 2 cut(s) 136, 590
TseI GCWGC 1 cut(s) 1488
Tsp45I GTSAC 2 cut(s) 136, 590
TspDTI ATGAA 6 cut(s) 63, 332, 514, 592, 950, 1398
TspGWI ACGGA 3 cut(s) 387, 578, 684
TspRI CASTG 1 cut(s) 1223
VspI ATTAAT 1 cut(s) 29
XapI RAATTY 3 cut(s) 391, 623, 910
XbaI TCTAGA 1 cut(s) 1136
XceI RCATGY 1 cut(s) 1365
XmiI GTMKAC 1 cut(s) 1326
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 6 cut(s) 404, 789, 884, 1004, 1137, 1722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.