Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455141.1

Orthogroup ID

OG0016058

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1622

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1621 bp

atggcagaaaactcatcagatttgccacgagaatgctgggaacacatattcaatcttctagacgacccttctcacttctcctcactctctctggtctccaagcaattcctctacatcaccaatcgcctcttgctcactctcgaactctccgattcaacactccaatccattctcccccgtcttctccatagattccgatggctgaaacatatagacctcagtgggttcagcggcgacatgaaccctcttctttatcgaattgccatatctgggttgaacctggaatccctcaatgtctccaaccaaacatgtttgccagtaaatgggataagagtgtttggctccaaaatgatgaacttgaagtgtttggattgctccagggtcaagttcttacaggacagtgatctaaacttgattgcagaatcgtttcctttgctccaagagcttgacattagctacccagaatttggatccaccaattcctcaactgggtcatcggattggaagcccatatccgattctgggatattttcactgacattgaatctcaagggcctgaggaggatcaacctttctggtaatcacttcattactgatctctcccttgtgcatctgtccaagcattgtgtgcttttgacccaggttgttattcattactgtgatttcataacacaaaatggtgtggctaaactgatccgtgcctgttgtcaattgagttgtgtttcggtttgtggaattggggggtctttgatttgtttgttaggttattcctcgttgagctttggatcattaggatgttcattgataagctccagggctttatctggtattgatttttcggactctgtggtttcggatgaattgctatgttcagtagcagaagcctgttttcctatgaagaagctcgttctttctaattgtacaggttttacttttgctggaatatcatttttggtgagtcattacccgtttcttgagtacttggatcttgaaggagcttattttctcacagataatgaaatcattgagctatccatgtcccttcatagtatcacttatataaaccttagctattgcagtagtctcaccggtgtcaccttgtacaccctcgcaagaaactgtctggttttaaatgaaatcaagatggtaggaacgaatgttggggatgaagccttggaaaccgatgtcatgccaaaccttggagtcaagtctcttaggttgtcccaaaatacttcaatgggaaatgggtttattgctaactatgtatccatttgcccaaatttggagctgcttgatttgagccattgtgtaaacatcacagaagacggcattgtagaagttctgaagagatgctctaggattaggcatttggagataaatgaatgtggtttgatgaagaatatttcaattgactttgagcttcccaagttggaggtattgtatgcaagaggattgagaattgatgatgatatgttggctataattgggaaaagatgttccaggctacagcaattggacttgtcgggctgcctgaatgtgacagcaaacggggtgaaggaagtggtggcgaactgcaaagaaattaaggagataaatttgaggtcgtgtgataacgtcagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04111 ko04120 map04111 map04120

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

540

Amino Acids

59.68

Weight (kDa)

5.36

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80630
fragaria_vesca	FvH4_6g28940
prunus_persica	Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis	pycom17g22470
rosa_chinensis	RchiOBHm_Chr2g0133501
rosa_laevigata	RLG00000019348
rosa_multiflora	Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111020
rosa_rugosa	Rorug02G0312400
rosa_samantha	Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	323, 467, 1199
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	6 cut(s)	465, 478, 572, 688, 793, 993
AcsI	RAATTY	3 cut(s)	464, 1279, 1594
AcuI	CTGAAG	1 cut(s)	1364
AfaI	GTAC	3 cut(s)	922, 980, 1103
AfiI	CCNNNNNNNGG	7 cut(s)	270, 323, 467, 489, 522, 1199, 1282
AflIII	ACRYGT	1 cut(s)	308
AgeI	ACCGGT	1 cut(s)	1088
AgsI	TTSAA	8 cut(s)	52, 156, 277, 361, 544, 992, 1236, 1407
AjnI	CCWGG	5 cut(s)	279, 377, 639, 812, 1499
AloI	GAACNNNNNNTCC	4 cut(s)	269, 301, 1480, 1512
Alw26I	GTCTC	4 cut(s)	100, 301, 1088, 1215
AlwI	GGATC	6 cut(s)	465, 478, 572, 688, 793, 993
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	1288, 1527
ApoI	RAATTY	3 cut(s)	464, 1279, 1594
AsiGI	ACCGGT	1 cut(s)	1088
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	5 cut(s)	109, 967, 1078, 1087, 1564
AxyI	CCTNAGG	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	173, 1329
BbvI	GCAGC	2 cut(s)	1275, 1514
BccI	CCATC	2 cut(s)	192, 1138
BceAI	ACGGC	1 cut(s)	1342
BciT130I	CCWGG	5 cut(s)	281, 379, 641, 814, 1501
BciVI	GTATCC	1 cut(s)	1276
BcoDI	GTCTC	4 cut(s)	100, 301, 1088, 1215
BfaI	CTAG	2 cut(s)	59, 1356
BfmI	CTRYAG	1 cut(s)	1505
BfuI	GTATCC	1 cut(s)	1276
BisI	GCNGC	3 cut(s)	232, 1289, 1528
BlsI	GCNGC	3 cut(s)	233, 1290, 1529
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	5 cut(s)	281, 379, 641, 814, 1501
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	343, 472
BmrFI	CCNGG	5 cut(s)	281, 379, 641, 814, 1501
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	619, 1340
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	173, 1329
BpmI	CTGGAG	2 cut(s)	361, 796
Bpu10I	CCTNAGC	1 cut(s)	1067
BpuEI	CTTGAG	2 cut(s)	533, 995
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	5 cut(s)	378, 639, 813, 1173, 1198
BsaWI	WCCGGW	1 cut(s)	1088
BsaXI	ACNNNNNCTCC	2 cut(s)	1424, 1454
Bsc4I	CCNNNNNNNGG	7 cut(s)	270, 323, 467, 489, 522, 1199, 1282
Bse118I	RCCGGY	1 cut(s)	1088
Bse1I	ACTGG	2 cut(s)	317, 493
Bse21I	CCTNAGG	1 cut(s)	557
BseBI	CCWGG	5 cut(s)	281, 379, 641, 814, 1501
BseDI	CCNNGG	5 cut(s)	378, 639, 813, 1173, 1198
BseGI	GGATG	3 cut(s)	800, 862, 1171
BseLI	CCNNNNNNNGG	7 cut(s)	270, 323, 467, 489, 522, 1199, 1282
BseMII	CTCAG	2 cut(s)	232, 548
BseNI	ACTGG	2 cut(s)	317, 493
BseRI	GAGGAG	2 cut(s)	70, 574
BseXI	GCAGC	2 cut(s)	1275, 1514
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	555
BshTI	ACCGGT	1 cut(s)	1088
BsiSI	CCGG	1 cut(s)	1089
BslFI	GGGAC	2 cut(s)	1024, 1207
BslI	CCNNNNNNNGG	7 cut(s)	270, 323, 467, 489, 522, 1199, 1282
BsmAI	GTCTC	4 cut(s)	100, 301, 1088, 1215
BsmFI	GGGAC	2 cut(s)	1024, 1207
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	555
Bso31I	GGTCTC	1 cut(s)	100
Bsp1407I	TGTACA	2 cut(s)	920, 1101
Bsp143I	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	231, 549
BspLI	GGNNCC	2 cut(s)	343, 472
BspPI	GGATC	6 cut(s)	465, 478, 572, 688, 793, 993
BspTNI	GGTCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	1088
BsrGI	TGTACA	2 cut(s)	920, 1101
BsrI	ACTGG	2 cut(s)	317, 493
BssAI	RCCGGY	1 cut(s)	1088
BssECI	CCNNGG	5 cut(s)	378, 639, 813, 1173, 1198
BssMI	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	1173, 1198
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	5 cut(s)	281, 379, 641, 814, 1501
Bst4CI	ACNGT	3 cut(s)	401, 659, 1121
Bst6I	CTCTTC	2 cut(s)	252, 1340
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstAUI	TGTACA	2 cut(s)	920, 1101
BstDEI	CTNAG	4 cut(s)	218, 557, 1067, 1214
BstF5I	GGATG	3 cut(s)	800, 862, 1171
BstKTI	GATC	7 cut(s)	406, 473, 567, 598, 696, 788, 988
BstMAI	GTCTC	4 cut(s)	100, 301, 1088, 1215
BstMBI	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 628
BstNI	CCWGG	5 cut(s)	281, 379, 641, 814, 1501
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	5 cut(s)	279, 377, 639, 812, 1499
BstSFI	CTRYAG	1 cut(s)	1505
BstV1I	GCAGC	2 cut(s)	1275, 1514
BstV2I	GAAGAC	2 cut(s)	173, 1329
BstX2I	RGATCY	2 cut(s)	470, 985
BstYI	RGATCY	2 cut(s)	470, 985
Bsu36I	CCTNAGG	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	1276
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	800, 862, 1171
BtsIMutI	CAGTG	3 cut(s)	226, 406, 533
Cfr10I	RCCGGY	1 cut(s)	1088
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	921, 979, 1102
CspAI	ACCGGT	1 cut(s)	1088
CviAII	CATG	4 cut(s)	238, 309, 1036, 1189
CviQI	GTAC	3 cut(s)	921, 979, 1102
DdeI	CTNAG	4 cut(s)	218, 557, 1067, 1214
DpnI	GATC	7 cut(s)	405, 472, 566, 597, 695, 787, 987
DpnII	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
DraI	TTTAAA	1 cut(s)	1131
Eam1104I	CTCTTC	2 cut(s)	252, 1340
EarI	CTCTTC	2 cut(s)	252, 1340
Eco130I	CCWWGG	2 cut(s)	1173, 1198
Eco31I	GGTCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	1364
Eco81I	CCTNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	5 cut(s)	279, 377, 639, 812, 1499
EcoT14I	CCWWGG	2 cut(s)	1173, 1198
ErhI	CCWWGG	2 cut(s)	1173, 1198
FaeI	CATG	4 cut(s)	241, 312, 1039, 1192
FaqI	GGGAC	2 cut(s)	1024, 1207
FatI	CATG	4 cut(s)	237, 308, 1035, 1188
Fnu4HI	GCNGC	3 cut(s)	232, 1289, 1528
FokI	GGATG	3 cut(s)	807, 869, 1178
Fsp4HI	GCNGC	3 cut(s)	232, 1289, 1528
FspBI	CTAG	2 cut(s)	59, 1356
GluI	GCNGC	3 cut(s)	232, 1289, 1528
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	361, 796
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	1089
Hin1II	CATG	4 cut(s)	241, 312, 1039, 1192
HinfI	GANTC	9 cut(s)	152, 192, 284, 422, 518, 544, 842, 958, 1203
HpaII	CCGG	1 cut(s)	1089
HphI	GGTGA	5 cut(s)	109, 967, 1078, 1087, 1564
Hpy166II	GTNNAC	2 cut(s)	1104, 1312
Hpy188I	TCNGA	8 cut(s)	19, 151, 197, 499, 517, 841, 856, 1344
Hpy188III	TCNNGA	5 cut(s)	59, 140, 974, 989, 1141
Hpy8I	GTNNAC	2 cut(s)	1104, 1312
HpyAV	CCTTC	4 cut(s)	78, 986, 1052, 1549
HpyCH4III	ACNGT	3 cut(s)	401, 659, 1121
HpyCH4IV	ACGT	1 cut(s)	1614
HpyCH4V	TGCA	5 cut(s)	419, 610, 1077, 1445, 1575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 628
HpyF3I	CTNAG	4 cut(s)	218, 557, 1067, 1214
HpySE526I	ACGT	1 cut(s)	1614
Hsp92II	CATG	4 cut(s)	241, 312, 1039, 1192
Kzo9I	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
LmnI	GCTCC	6 cut(s)	347, 380, 441, 815, 995, 1285
Lsp1109I	GCAGC	2 cut(s)	1275, 1514
LweI	GCATC	2 cut(s)	619, 1340
MaeI	CTAG	2 cut(s)	59, 1356
MaeII	ACGT	1 cut(s)	1614
MaeIII	GTNAC	2 cut(s)	1093, 1537
MalI	GATC	7 cut(s)	405, 472, 566, 597, 695, 787, 987
MboI	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
MboII	GAAGA	7 cut(s)	47, 173, 239, 910, 1334, 1357, 1408
MfeI	CAATTG	3 cut(s)	710, 1407, 1511
MflI	RGATCY	2 cut(s)	470, 985
MlyI	GAGTC	3 cut(s)	836, 967, 1212
MmeI	TCCRAC	2 cut(s)	324, 1410
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	1130, 1584
MslI	CAYNNNNRTG	3 cut(s)	31, 657, 793
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	1089
MspR9I	CCNGG	5 cut(s)	281, 379, 641, 814, 1501
MunI	CAATTG	3 cut(s)	710, 1407, 1511
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	5 cut(s)	281, 379, 641, 814, 1501
MwoI	GCNNNNNNNGC	2 cut(s)	442, 628
NdeII	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
NlaIII	CATG	4 cut(s)	241, 312, 1039, 1192
NlaIV	GGNNCC	2 cut(s)	343, 472
NmuCI	GTSAC	2 cut(s)	1093, 1537
NspI	RCATGY	1 cut(s)	312
PciI	ACATGT	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	6 cut(s)	152, 192, 284, 422, 518, 544
PflMI	CCANNNNNTGG	3 cut(s)	323, 467, 1199
PinAI	ACCGGT	1 cut(s)	1088
PkrI	GCNGC	3 cut(s)	233, 1290, 1529
PleI	GAGTC	3 cut(s)	836, 966, 1211
PpsI	GAGTC	3 cut(s)	836, 966, 1211
PscI	ACATGT	1 cut(s)	308
Psp6I	CCWGG	5 cut(s)	279, 377, 639, 812, 1499
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	5 cut(s)	279, 377, 639, 812, 1499
PspN4I	GGNNCC	2 cut(s)	343, 472
PspPI	GGNCC	1 cut(s)	553
PsuI	RGATCY	2 cut(s)	470, 985
RsaI	GTAC	3 cut(s)	922, 980, 1103
RsaNI	GTAC	3 cut(s)	921, 979, 1102
RseI	CAYNNNNRTG	3 cut(s)	31, 657, 793
SaqAI	TTAA	2 cut(s)	1130, 1584
SatI	GCNGC	3 cut(s)	232, 1289, 1528
Sau3AI	GATC	7 cut(s)	403, 470, 564, 595, 693, 785, 985
Sau96I	GGNCC	1 cut(s)	553
ScaI	AGTACT	1 cut(s)	980
SchI	GAGTC	3 cut(s)	836, 967, 1212
ScrFI	CCNGG	5 cut(s)	281, 379, 641, 814, 1501
SfaNI	GCATC	2 cut(s)	619, 1340
SfcI	CTRYAG	1 cut(s)	1505
SgrAI	CRCCGGYG	1 cut(s)	1088
SmiMI	CAYNNNNRTG	3 cut(s)	31, 657, 793
SmlI	CTYRAG	2 cut(s)	548, 974
SmoI	CTYRAG	2 cut(s)	548, 974
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	1402
SspMI	CTAG	2 cut(s)	59, 1356
StyD4I	CCNGG	5 cut(s)	279, 377, 639, 812, 1499
StyI	CCWWGG	2 cut(s)	1173, 1198
TaaI	ACNGT	3 cut(s)	401, 659, 1121
TaiI	ACGT	1 cut(s)	1617
TaqI	TCGA	2 cut(s)	141, 256
TatI	WGTACW	3 cut(s)	920, 978, 1101
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	6 cut(s)	152, 192, 284, 422, 518, 544
Tru1I	TTAA	2 cut(s)	1130, 1584
Tru9I	TTAA	2 cut(s)	1130, 1584
TscAI	CASTG	3 cut(s)	226, 406, 540
TseFI	GTSAC	2 cut(s)	1093, 1537
TseI	GCWGC	2 cut(s)	1288, 1527
Tsp45I	GTSAC	2 cut(s)	1093, 1537
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	3 cut(s)	226, 406, 540
Van91I	CCANNNNNTGG	3 cut(s)	323, 467, 1199
XapI	RAATTY	3 cut(s)	464, 1279, 1594
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	59, 1356
ZrmI	AGTACT	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.