Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016058

Physical Location & Seq

Genomic Coordinates Forward (+)

22352234 .. 22353405

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACAGAAAACTCACCAGATTTGCCACGAGAATGCTGGGAACACATATTCAATCTCCTAGACCTCGACCACCCCTCTCAACTGTCCCCCCTCTCTCTCGTCTCCAAGCAATTCCTCCACATCACCAATCGCCTCTTACTCTCTCTCAAACTCTCCGACCCAACACTCCTCCCAATCCTACCTCGTCTTCTCCACAGATTCCAATGCCTCAAAGAAATAAACCTCTCCGGCTTCGGCGGCGACTTGAACCCTGTTCTTCATCGAATTGCCATATCTGGGTTGAACCTCCAATCACTCGACATCTCATCCCGACAAACTTTACCCGTAAATGGATTAAGAGTGTTCTCCTCCAAAATGATGAACCTGACGTCATTGAATTGCTGCAGAGTCGGATTCTTACAGGACACTGATCTAACTCTGATAGCAGAGTCGTTTCCTATGCTACAGGAGCTTGACATTAGCTACCCAGAACAGGGATCCTCAACTGGGTCGTCGGATTGGAAGCCCATATCCGATTCGGGTGTACTTTCGCTGGCAGTGAATCTCAAAAGCCTGAGGAGGATCAACCTTTCTGGATGTCCATGGAAAAGCTCCAAGGCTTTATGTGCTGTTGATTTTTCGAACACGTTGGTTCCGGATGAATTGCTTTGTTTAGTAGCAGAAGCATGTTTCCCTATGAAGAAGATTGTTCTTTGTAATTGTCAGGGTTATAGTTTTGCTGGAGTTTCATTTTTGGTGAGGCATTACCCGTTGGTTGAGCACTTGGATCTTGAAAGAACTTTTTTTCTTACAGATAATGATATCTTTGAGCTATCCAAGTCGCTTGGTAGTATCACTTATATATACCTTAGTTATTGCCATAGACTCACCAGTGTCACCTTTGACACCCTCGTTAGAAACTGTCGGGTTTTAAATGTAATCATAATGGCAGGAACGAATGCTGGGGCTGAAGCCTTGGAGTCAAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04111 ko04120 map04111 map04120

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

324

Amino Acids

36.03

Weight (kDa)

6.06

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80630
fragaria_vesca	FvH4_6g28940
prunus_persica	Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis	pycom17g22470
rosa_chinensis	RchiOBHm_Chr2g0133501
rosa_laevigata	RLG00000019348
rosa_multiflora	Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111020
rosa_rugosa	Rorug02G0312400
rosa_samantha	Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	4 cut(s)	471, 484, 569, 774
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	5 cut(s)	276, 329, 472, 473, 486
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	5 cut(s)	52, 247, 283, 376, 773
AluBI	AGCT	4 cut(s)	451, 462, 591, 811
AluI	AGCT	4 cut(s)	451, 462, 591, 811
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	4 cut(s)	471, 484, 569, 774
Aor13HI	TCCGGA	1 cut(s)	634
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	965
AsuHPI	GGTGA	5 cut(s)	6, 115, 748, 859, 868
AsuII	TTCGAA	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	382, 443
BisI	GCNGC	2 cut(s)	238, 382
BlsI	GCNGC	2 cut(s)	239, 383
BmiI	GGNNCC	2 cut(s)	478, 633
BmrI	ACTGGG	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	620
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	581, 594, 954
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	5 cut(s)	276, 329, 472, 473, 486
Bse1I	ACTGG	2 cut(s)	490, 870
Bse21I	CCTNAGG	1 cut(s)	554
BseAI	TCCGGA	1 cut(s)	634
BseDI	CCNNGG	3 cut(s)	581, 594, 954
BseGI	GGATG	3 cut(s)	305, 581, 643
BseLI	CCNNNNNNNGG	5 cut(s)	276, 329, 472, 473, 486
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	2 cut(s)	490, 870
BseRI	GAGGAG	3 cut(s)	158, 337, 571
BseXI	GCAGC	1 cut(s)	368
BseYI	CCCAGC	2 cut(s)	36, 941
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	228, 635
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	5 cut(s)	276, 329, 472, 473, 486
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	38, 943
Bsp119I	TTCGAA	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	4 cut(s)	409, 476, 561, 766
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	478, 633
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	4 cut(s)	471, 484, 569, 774
BspT104I	TTCGAA	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	490, 870
BssECI	CCNNGG	3 cut(s)	581, 594, 954
BssMI	GATC	4 cut(s)	409, 476, 561, 766
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	581, 594, 954
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	84, 902
BstACI	GRCGYC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	554, 848
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	3 cut(s)	305, 581, 643
BstKTI	GATC	4 cut(s)	412, 479, 564, 769
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	409, 476, 561, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 448, 605
BstNSI	RCATGY	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	382, 443
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	476, 766
BstYI	RGATCY	2 cut(s)	476, 766
Bsu36I	CCTNAGG	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	305, 581, 643
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	3 cut(s)	405, 543, 877
Cac8I	GCNNGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	2 cut(s)	582, 666
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	2 cut(s)	554, 848
DpnI	GATC	4 cut(s)	411, 478, 563, 768
DpnII	GATC	4 cut(s)	409, 476, 561, 766
DraI	TTTAAA	1 cut(s)	912
Eco130I	CCWWGG	3 cut(s)	581, 594, 954
Eco32I	GATATC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	969
Eco81I	CCTNAGG	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	3 cut(s)	581, 594, 954
ErhI	CCWWGG	3 cut(s)	581, 594, 954
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	585, 669
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	581, 665
Fnu4HI	GCNGC	2 cut(s)	238, 382
FokI	GGATG	3 cut(s)	292, 588, 650
Fsp4HI	GCNGC	2 cut(s)	238, 382
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	2 cut(s)	238, 382
GsaI	CCCAGC	2 cut(s)	40, 945
GsuI	CTGGAG	1 cut(s)	741
HapII	CCGG	2 cut(s)	228, 635
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	585, 669
HinfI	GANTC	8 cut(s)	198, 387, 393, 428, 515, 541, 864, 959
HpaII	CCGG	2 cut(s)	228, 635
HphI	GGTGA	5 cut(s)	6, 115, 748, 859, 868
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	6 cut(s)	157, 392, 420, 496, 514, 971
Hpy188III	TCNNGA	4 cut(s)	309, 573, 635, 770
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	496
HpyCH4III	ACNGT	2 cut(s)	84, 902
HpyCH4IV	ACGT	2 cut(s)	368, 626
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 448, 605
HpyF3I	CTNAG	2 cut(s)	554, 848
HpySE526I	ACGT	2 cut(s)	368, 626
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	2 cut(s)	585, 669
Kpn2I	TCCGGA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	409, 476, 561, 766
LmnI	GCTCC	2 cut(s)	448, 596
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	368, 626
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	4 cut(s)	411, 478, 563, 768
MboI	GATC	4 cut(s)	409, 476, 561, 766
MboII	GAAGA	4 cut(s)	179, 248, 691, 694
MflI	RGATCY	2 cut(s)	476, 766
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	6 cut(s)	110, 264, 376, 641, 697, 965
MlyI	GAGTC	4 cut(s)	396, 437, 858, 968
MmeI	TCCRAC	3 cut(s)	180, 370, 474
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	2 cut(s)	335, 911
MslI	CAYNNNNRTG	1 cut(s)	31
MspI	CCGG	2 cut(s)	228, 635
Mva1269I	GAATGC	2 cut(s)	38, 943
MwoI	GCNNNNNNNGC	3 cut(s)	237, 448, 605
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	4 cut(s)	409, 476, 561, 766
NlaIII	CATG	2 cut(s)	585, 669
NlaIV	GGNNCC	2 cut(s)	478, 633
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	1 cut(s)	669
NspV	TTCGAA	1 cut(s)	620
PctI	GAATGC	2 cut(s)	38, 943
PfeI	GAWTC	4 cut(s)	198, 393, 515, 541
PkrI	GCNGC	2 cut(s)	239, 383
PleI	GAGTC	4 cut(s)	395, 436, 858, 967
PpsI	GAGTC	4 cut(s)	395, 436, 858, 967
PspFI	CCCAGC	2 cut(s)	36, 941
PspN4I	GGNNCC	2 cut(s)	478, 633
PstI	CTGCAG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	476, 766
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	335, 911
SatI	GCNGC	2 cut(s)	238, 382
Sau3AI	GATC	4 cut(s)	409, 476, 561, 766
SchI	GAGTC	4 cut(s)	396, 437, 858, 968
SduI	GDGCHC	1 cut(s)	762
SfcI	CTRYAG	2 cut(s)	382, 443
SfuI	TTCGAA	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	31
Sse9I	AATT	6 cut(s)	110, 264, 376, 641, 697, 965
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	3 cut(s)	581, 594, 954
TaaI	ACNGT	2 cut(s)	84, 902
TaiI	ACGT	2 cut(s)	371, 629
TaqI	TCGA	4 cut(s)	66, 262, 297, 620
TasI	AATT	6 cut(s)	110, 264, 376, 641, 697, 965
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	4 cut(s)	198, 393, 515, 541
Tru1I	TTAA	2 cut(s)	335, 911
Tru9I	TTAA	2 cut(s)	335, 911
TscAI	CASTG	3 cut(s)	412, 543, 877
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	5 cut(s)	248, 374, 654, 692, 717
TspRI	CASTG	3 cut(s)	412, 543, 877
XapI	RAATTY	1 cut(s)	965
XceI	RCATGY	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.