Rroxscaffold_2G00111020

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
35542433 .. 35544763
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111020.1

Sequence Viewer

Length: 1755 bp
ATGGCAGAAAACTCATCAGATTTGCCACGAGAATGCTGGGAACACATATTCAATCTTCTAGACCACCCTTCTCACTTCTCCTCACTCTCTCTGGTCTCCAAGCAATTCCTCTACATCACCAATCGCCTCTTACTCACTCTCAAACTCTCCGATTCAACACTCCAATCCATTCTCCCCCGTCTTCTCCACAGATTCCGATGGATGAAACATATAGACCTCAGTGGGTTCAGCGGCGACATGAACCCTCTTCTTTATCGAATTGCCATATCTGGGTTGAACCTGGAATCGCTCAATGTCTCCAACCAGACAAGTTTACCAGTAAATGGAATAAGAGTGTTTGGTTCCAAAATGATGAACTTGAAGTGTTTGGATTGCTCCAGGGTCAAGTTCTTACAGGACAGTGATCTAAACTTGATTGCAGAATCGTTTCCTTTGCTCCAAGAGCTTGACATTAGCTACCCAGAATTTGGATCCACCAATTCCTCAACTGGGTCATCGGATTGGAAGCCCATATCCGATTCTGGGATATTTTCACTGACATTGAATCTCAAGGGCCTGAGGAGGATCAACCTTTCTGGTAATCACTTCATTACTGATCTCTCCCTTGTGCATCTGTCCAAGCATTGTGTGCTTTTGACCCAGGTTGTTATTCATTACTGTGATTTCATAACACAAAATGGTGTGGCTAAACTGATCCGTGCCTGTTGTCACTTGAGTGGTGTTTCGGTTTGTGGAATTGGGGGGTCTTTGATTTGTTTGTTAGGTTATTCCTCGTTGAGCTTTGGATCATTAGGGTGTTCATTGATAAGCTCCAGGGCTTTATCTGGTATTGATTTTTCGGACTCTGTGGTTTCGGATGAATTGCTATGTTCAGTAGCAGAAGCATGTTTTCCTATGAAGAAGCTCGTTCTTTCTAATTGTACAAGTTTTACTTTTGCTGGAATATCACTTTTGGTGAGTCATTACCCGTTTCTTGAGTACTTGGATCTTGAAGGAGCTTATTTTCTTACAGATAATGAAATCATTGAGCTATCCATGTCCCTTCATAGTATCACTTACATAAACCTTAGCTATTGCAGTAGTCTCACCGGTGTCACCTTGTACACCCTCGCAAGAAACTGTCTGGTTTTAAATGAAATCAAGATGGTAGGAACGAATGTTGGGGATGAAGCCTTGGAAACTGATGTCATGCCAAACCTTGGAGTCAAGTCTCTTAAGTTGTCCCAAAATACTTCAATGGGAAATGGGTTTATTGCTAACTATGTATCCATTTGCCCAAATTTGGAGCTGCTTGATTTGAGCCATTCTGTAAACATCACAGAAGACGGCATTGTAGAAGTTCTGAAGAGGTGCTCTAGGATTAGGCATTTGGAGATAAATGAATGTGGTTTGATGAAGAACATTTCAATTGACTTTGAACTTCCCAAGTTGGAGGTATTGTATGCAAGAGGATTGAGAATTGATGATGATATGTTGGCTATAATTGGGAAAAGATGTTCCAGGCTACAGCAATTGGACTTGTCGGGCTGCCTGAATGTGACAGCAAACGGGGTTAAGGAAGTGGTGGCGAACTGCAAAGAAATTAGGGAGATAAATTTGAGGTCGTGTGATAACGTCAGTGTTGATATTATTCCTTGGATGGTGTTTTCAAGGCCGTCACTCAAGAAAATAGTACAACCTTGTGGTGGCTCTGTTCCTACTGAGAGCCAAAGAAACCATTTCTTGCGTCATGGATGTCTTGTTTGTGAAGGCTAG

Protein Analysis

584

Amino Acids

64.55

Weight (kDa)

5.98

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016058)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 323, 467, 1199
AciI CCGC 1 cut(s) 231
AclWI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
AcsI RAATTY 3 cut(s) 464, 1279, 1594
AcuI CTGAAG 1 cut(s) 1364
AfaI GTAC 4 cut(s) 922, 980, 1103, 1674
AfiI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
AflII CTTAAG 1 cut(s) 1214
AgeI ACCGGT 1 cut(s) 1088
AjnI CCWGG 5 cut(s) 279, 377, 639, 812, 1499
AleI CACNNNNGTG 1 cut(s) 714
AloI GAACNNNNNNTCC 2 cut(s) 1480, 1512
AluBI AGCT 9 cut(s) 445, 456, 780, 810, 904, 998, 1030, 1071, 1288
AluI AGCT 9 cut(s) 445, 456, 780, 810, 904, 998, 1030, 1071, 1288
Alw21I GWGCWC 1 cut(s) 1355
Alw26I GTCTC 4 cut(s) 100, 301, 1088, 1215
AlwI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
AoxI GGCC 2 cut(s) 553, 1652
ApeKI GCWGC 2 cut(s) 1288, 1527
ApoI RAATTY 3 cut(s) 464, 1279, 1594
AsiGI ACCGGT 1 cut(s) 1088
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 4 cut(s) 109, 967, 1078, 1087
AxyI CCTNAGG 1 cut(s) 557
BamHI GGATCC 1 cut(s) 470
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 173, 1329
Bbv12I GWGCWC 1 cut(s) 1355
BbvI GCAGC 2 cut(s) 1275, 1514
BccI CCATC 3 cut(s) 192, 1138, 1633
BceAI ACGGC 2 cut(s) 1342, 1639
BciT130I CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BciVI GTATCC 1 cut(s) 1276
BcoDI GTCTC 4 cut(s) 100, 301, 1088, 1215
BfaI CTAG 3 cut(s) 59, 1356, 1753
BfmI CTRYAG 1 cut(s) 1505
BfrI CTTAAG 1 cut(s) 1214
BfuI GTATCC 1 cut(s) 1276
BisI GCNGC 3 cut(s) 232, 1289, 1528
BlsI GCNGC 3 cut(s) 233, 1290, 1529
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 5 cut(s) 281, 379, 641, 814, 1501
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 2 cut(s) 343, 472
BmrFI CCNGG 5 cut(s) 281, 379, 641, 814, 1501
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 2 cut(s) 173, 1329
BpmI CTGGAG 2 cut(s) 361, 796
Bpu10I CCTNAGC 1 cut(s) 1067
BpuEI CTTGAG 4 cut(s) 533, 733, 995, 1646
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BsaWI WCCGGW 1 cut(s) 1088
BsaXI ACNNNNNCTCC 2 cut(s) 1424, 1454
Bsc4I CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
Bse118I RCCGGY 1 cut(s) 1088
Bse1I ACTGG 2 cut(s) 317, 493
Bse21I CCTNAGG 1 cut(s) 557
BseBI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BseDI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BseGI GGATG 5 cut(s) 207, 862, 1171, 1644, 1739
BseLI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
BseMII CTCAG 3 cut(s) 232, 548, 1692
BseNI ACTGG 2 cut(s) 317, 493
BseRI GAGGAG 2 cut(s) 70, 574
BseXI GCAGC 2 cut(s) 1275, 1514
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 555, 1654
BshTI ACCGGT 1 cut(s) 1088
BsiHKAI GWGCWC 1 cut(s) 1355
BsiSI CCGG 1 cut(s) 1089
BslFI GGGAC 2 cut(s) 1024, 1207
BslI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
BsmAI GTCTC 4 cut(s) 100, 301, 1088, 1215
BsmFI GGGAC 2 cut(s) 1024, 1207
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 555, 1654
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 1355
Bsp1407I TGTACA 2 cut(s) 920, 1101
Bsp143I GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 555, 1654
BspCNI CTCAG 3 cut(s) 231, 549, 1693
BspLI GGNNCC 2 cut(s) 343, 472
BspPI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
BspTI CTTAAG 1 cut(s) 1214
BspTNI GGTCTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 1088
BsrGI TGTACA 2 cut(s) 920, 1101
BsrI ACTGG 2 cut(s) 317, 493
BssAI RCCGGY 1 cut(s) 1088
BssECI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BssMI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 3 cut(s) 1173, 1198, 1634
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
Bst4CI ACNGT 3 cut(s) 401, 659, 1121
Bst6I CTCTTC 2 cut(s) 252, 1340
BstAFI CTTAAG 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 628
BstAUI TGTACA 2 cut(s) 920, 1101
BstDEI CTNAG 4 cut(s) 218, 557, 1067, 1701
BstF5I GGATG 5 cut(s) 207, 862, 1171, 1644, 1739
BstKTI GATC 7 cut(s) 406, 473, 567, 598, 696, 788, 988
BstMAI GTCTC 4 cut(s) 100, 301, 1088, 1215
BstMBI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BstMWI GCNNNNNNNGC 2 cut(s) 442, 628
BstNI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BstNSI RCATGY 1 cut(s) 888
BstSCI CCNGG 5 cut(s) 279, 377, 639, 812, 1499
BstSFI CTRYAG 1 cut(s) 1505
BstV1I GCAGC 2 cut(s) 1275, 1514
BstV2I GAAGAC 2 cut(s) 173, 1329
BstX2I RGATCY 2 cut(s) 470, 985
BstYI RGATCY 2 cut(s) 470, 985
Bsu36I CCTNAGG 1 cut(s) 557
BsuI GTATCC 1 cut(s) 1276
BsuRI GGCC 2 cut(s) 555, 1654
BtsCI GGATG 5 cut(s) 207, 862, 1171, 1644, 1739
BtsIMutI CAGTG 4 cut(s) 226, 406, 533, 1624
Cfr10I RCCGGY 1 cut(s) 1088
Cfr13I GGNCC 1 cut(s) 553
CseI GACGC 1 cut(s) 1715
Csp6I GTAC 4 cut(s) 921, 979, 1102, 1673
CspAI ACCGGT 1 cut(s) 1088
CviAII CATG 5 cut(s) 238, 885, 1036, 1189, 1730
CviQI GTAC 4 cut(s) 921, 979, 1102, 1673
DdeI CTNAG 4 cut(s) 218, 557, 1067, 1701
DpnI GATC 7 cut(s) 405, 472, 566, 597, 695, 787, 987
DpnII GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
DraI TTTAAA 1 cut(s) 1131
Eam1104I CTCTTC 2 cut(s) 252, 1340
EarI CTCTTC 2 cut(s) 252, 1340
Eco130I CCWWGG 3 cut(s) 1173, 1198, 1634
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 1364
Eco81I CCTNAGG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 5 cut(s) 279, 377, 639, 812, 1499
EcoT14I CCWWGG 3 cut(s) 1173, 1198, 1634
ErhI CCWWGG 3 cut(s) 1173, 1198, 1634
FaeI CATG 5 cut(s) 241, 888, 1039, 1192, 1733
FalI AAGNNNNNCTT 2 cut(s) 916, 948
FaqI GGGAC 2 cut(s) 1024, 1207
FatI CATG 5 cut(s) 237, 884, 1035, 1188, 1729
Fnu4HI GCNGC 3 cut(s) 232, 1289, 1528
FokI GGATG 5 cut(s) 214, 869, 1178, 1651, 1746
Fsp4HI GCNGC 3 cut(s) 232, 1289, 1528
FspBI CTAG 3 cut(s) 59, 1356, 1753
GluI GCNGC 3 cut(s) 232, 1289, 1528
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 361, 796
HaeIII GGCC 2 cut(s) 555, 1654
HapII CCGG 1 cut(s) 1089
HgaI GACGC 1 cut(s) 1715
Hin1II CATG 5 cut(s) 241, 888, 1039, 1192, 1733
HinfI GANTC 9 cut(s) 152, 192, 284, 422, 518, 544, 842, 958, 1203
HpaII CCGG 1 cut(s) 1089
HphI GGTGA 4 cut(s) 109, 967, 1078, 1087
Hpy166II GTNNAC 3 cut(s) 314, 1104, 1312
Hpy188I TCNGA 8 cut(s) 19, 151, 197, 499, 517, 841, 856, 1344
Hpy188III TCNNGA 5 cut(s) 59, 974, 989, 1141, 1663
Hpy8I GTNNAC 3 cut(s) 314, 1104, 1312
HpyAV CCTTC 4 cut(s) 78, 986, 1052, 1742
HpyCH4III ACNGT 3 cut(s) 401, 659, 1121
HpyCH4IV ACGT 1 cut(s) 1614
HpyCH4V TGCA 5 cut(s) 419, 610, 1077, 1445, 1575
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 628
HpyF3I CTNAG 4 cut(s) 218, 557, 1067, 1701
HpySE526I ACGT 1 cut(s) 1614
Hsp92II CATG 5 cut(s) 241, 888, 1039, 1192, 1733
Kzo9I GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
LmnI GCTCC 5 cut(s) 380, 441, 815, 995, 1285
Lsp1109I GCAGC 2 cut(s) 1275, 1514
LweI GCATC 1 cut(s) 619
MaeI CTAG 3 cut(s) 59, 1356, 1753
MaeII ACGT 1 cut(s) 1614
MaeIII GTNAC 4 cut(s) 707, 1093, 1537, 1656
MalI GATC 7 cut(s) 405, 472, 566, 597, 695, 787, 987
MboI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
MboII GAAGA 7 cut(s) 47, 173, 239, 910, 1334, 1357, 1408
MfeI CAATTG 2 cut(s) 1407, 1511
MflI RGATCY 2 cut(s) 470, 985
MhlI GDGCHC 1 cut(s) 1355
MlyI GAGTC 3 cut(s) 836, 967, 1212
MmeI TCCRAC 2 cut(s) 324, 1410
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 1130, 1215, 1554
MslI CAYNNNNRTG 4 cut(s) 31, 657, 714, 793
MspA1I CMGCKG 1 cut(s) 231
MspCI CTTAAG 1 cut(s) 1214
MspI CCGG 1 cut(s) 1089
MspR9I CCNGG 5 cut(s) 281, 379, 641, 814, 1501
MunI CAATTG 2 cut(s) 1407, 1511
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
MwoI GCNNNNNNNGC 2 cut(s) 442, 628
NdeII GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
NlaIII CATG 5 cut(s) 241, 888, 1039, 1192, 1733
NlaIV GGNNCC 2 cut(s) 343, 472
NmuCI GTSAC 4 cut(s) 707, 1093, 1537, 1656
NspI RCATGY 1 cut(s) 888
OliI CACNNNNGTG 1 cut(s) 714
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 6 cut(s) 152, 192, 284, 422, 518, 544
PflMI CCANNNNNTGG 3 cut(s) 323, 467, 1199
PinAI ACCGGT 1 cut(s) 1088
PkrI GCNGC 3 cut(s) 233, 1290, 1529
PleI GAGTC 3 cut(s) 836, 966, 1211
PpsI GAGTC 3 cut(s) 836, 966, 1211
Psp6I CCWGG 5 cut(s) 279, 377, 639, 812, 1499
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 5 cut(s) 279, 377, 639, 812, 1499
PspN4I GGNNCC 2 cut(s) 343, 472
PspPI GGNCC 1 cut(s) 553
PsuI RGATCY 2 cut(s) 470, 985
RsaI GTAC 4 cut(s) 922, 980, 1103, 1674
RsaNI GTAC 4 cut(s) 921, 979, 1102, 1673
RseI CAYNNNNRTG 4 cut(s) 31, 657, 714, 793
SaqAI TTAA 3 cut(s) 1130, 1215, 1554
SatI GCNGC 3 cut(s) 232, 1289, 1528
Sau3AI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
Sau96I GGNCC 1 cut(s) 553
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 3 cut(s) 836, 967, 1212
ScrFI CCNGG 5 cut(s) 281, 379, 641, 814, 1501
SduI GDGCHC 1 cut(s) 1355
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 1505
SgrAI CRCCGGYG 1 cut(s) 1088
SmiMI CAYNNNNRTG 4 cut(s) 31, 657, 714, 793
SmlI CTYRAG 5 cut(s) 548, 712, 974, 1214, 1661
SmoI CTYRAG 5 cut(s) 548, 712, 974, 1214, 1661
SsiI CCGC 1 cut(s) 231
SspMI CTAG 3 cut(s) 59, 1356, 1753
StyD4I CCNGG 5 cut(s) 279, 377, 639, 812, 1499
StyI CCWWGG 3 cut(s) 1173, 1198, 1634
TaaI ACNGT 3 cut(s) 401, 659, 1121
TaiI ACGT 1 cut(s) 1617
TaqI TCGA 1 cut(s) 256
TatI WGTACW 4 cut(s) 920, 978, 1101, 1672
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 6 cut(s) 152, 192, 284, 422, 518, 544
Tru1I TTAA 3 cut(s) 1130, 1215, 1554
Tru9I TTAA 3 cut(s) 1130, 1215, 1554
TscAI CASTG 4 cut(s) 226, 406, 540, 1624
TseFI GTSAC 4 cut(s) 707, 1093, 1537, 1656
TseI GCWGC 2 cut(s) 1288, 1527
Tsp45I GTSAC 4 cut(s) 707, 1093, 1537, 1656
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 4 cut(s) 226, 406, 540, 1624
Van91I CCANNNNNTGG 3 cut(s) 323, 467, 1199
Vha464I CTTAAG 1 cut(s) 1214
XapI RAATTY 3 cut(s) 464, 1279, 1594
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 1 cut(s) 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 3 cut(s) 59, 1356, 1753
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.