Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016058

Physical Location & Seq

Genomic Coordinates Reverse (-)

37769143 .. 37772876

Gene Structure 3734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0312400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGCGGGAAGGTGGGATCTTGGGCTTCCAAAGGCTAAAGCTTGTAGTCTTCGAGAGCAAGCAACAAGAACAATTCTTCGCAATGTGAGGTCACAAGGGCACACATATGTTGAGGTCAGGGAAGATGGGAAGAAGTTCATTTTCTTCTGTACTCTGTGCCTTGCACCGTGCTATAGCGATAAGGTGCTGTTTGATCACTTGAAGGGTAATCTTCACAATGAGAGATTGGCTGCTGCTAAGGTTACTCTTTTACGACCAAATCCTTGGCCTTTCAATGATGGTGTGGTTTTCTTTGACAATTCATATGAGACTGATAGAGTGTTAGTGACTCCAGATGACAATAAATTTAGGCTGTTGGAGTCTCATGACAATGAGAACAATCTTGCTATTGTCAAATATGGGGAAAATTTGAATACCAATGGCTATGATCATTGCGGTGTTGATGGGCGTGAATGTAATGGGTATATAGATTTGCCAGGCTTGCATTCAAATGTTGGAGTTAAATCCTTTGTTGAGAATTCAACTGCTGATGGAGCAATTTCCTCTGTGGTGATCCCTGGTGTTGTGGTTAGGGATGAAATTACTGATATAGAAGTGAGAGAGGTGGGTTTAGGAGAAATTGCTGCAAGGTTCCTTGGGAAAGATGGCATTAGTAGAATATGGTGTGAATGGTTGGGGGTAAAATCTTTAGACAGTGAGAATTTTTGCAAACTTCCTGAGCATGATTTCGCTGTTGTTACCTTCAGTTATAATATTGATTTGGGTAGAAAGGGTTTACTTGATGATGTAAGGATGTTGCTCTCATCCAGCCCTACAATGGAATCAGGGAATGGTGAAGGCACCGGTTGTAAGAGAAAGAAATCCTTTTCTGACCCTGAGGATATCAGTGACTCTCTAAGTAATCAGTATGATTTGTTTGGGGAAGATTCCTCTGCTTCCAGTGGTCCAGCATCTAGGTTGCTTCTAGACCATTATGATGATCAGCTACCATCACTGAATACAAGATTTATTTTGAACAAATCTATAAGGCGAGAGCTAAGACGGCAACAGCGTTTAGCGTCAGGGAGAATGTGTGATATCTGTCAACAGAGGATGCTTCCTGGGAAAGATGTAGCAACTCTCATGAATGTGAAGACTGGAAGGCTTGCTTGCAGTAGTCGAAATGTGAATGGGGCTTTTCATGTGTTTCATACTTCCTGCCTTATACACTGGATTCTTCTGTGTGAAGTTGAGATAATCACAAATCAGAATACTGGTTCAAAAGTGAGGAGAAGGTCTAGGAGAAAAACTGCAGCCAAGTGCAATGGAACAGATGCTCAGTTGAAATCTATGACCCCACAAATTTATTCAGTGTTCTGCCCAGAGTGCCAGGGTACTGGTATTGTCGTTGATGGAGATGAACTGGAGAAACCGAATCTTCCTTTGTCTCAGATGTTCACGTATAAGATAAAGGTGAGTGATGCACGTAGAGCATGGATGAAGAGTCCTGAAATGTTGCAGAATTGCTCGACTGGTTTTCATTTTCCCTCCCAATCTGAAGCAGGAATCCAGGAGAAGGTGAAAACGCTGAAGTTGTTGCATTTCTATAGAGCACATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04111 ko04120 map04111 map04120

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

533

Amino Acids

59.77

Weight (kDa)

7.5

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80630
fragaria_vesca	FvH4_6g28940
prunus_persica	Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis	pycom17g22470
rosa_chinensis	RchiOBHm_Chr2g0133501
rosa_laevigata	RLG00000019348
rosa_multiflora	Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111020
rosa_rugosa	Rorug02G0312400
rosa_samantha	Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	839
AciI	CCGC	2 cut(s)	5, 435
AclWI	GGATC	2 cut(s)	24, 547
AcsI	RAATTY	5 cut(s)	344, 406, 517, 700, 1341
AcuI	CTGAAG	3 cut(s)	727, 1557, 1589
AfaI	GTAC	2 cut(s)	151, 1375
AfiI	CCNNNNNNNGG	2 cut(s)	817, 1555
AgeI	ACCGGT	1 cut(s)	842
AgsI	TTSAA	8 cut(s)	202, 274, 412, 489, 522, 1015, 1260, 1324
AjnI	CCWGG	5 cut(s)	475, 556, 1099, 1368, 1548
AluBI	AGCT	3 cut(s)	41, 985, 1036
AluI	AGCT	3 cut(s)	41, 985, 1036
Alw21I	GWGCWC	1 cut(s)	1594
Alw26I	GTCTC	3 cut(s)	302, 366, 1431
AlwI	GGATC	2 cut(s)	24, 547
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	4 cut(s)	230, 233, 623, 1292
ApoI	RAATTY	5 cut(s)	344, 406, 517, 700, 1341
AsiGI	ACCGGT	1 cut(s)	842
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	4 cut(s)	562, 845, 1465, 1570
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	41, 1139
Bbv12I	GWGCWC	1 cut(s)	1594
BbvI	GCAGC	4 cut(s)	217, 220, 610, 1304
BccI	CCATC	7 cut(s)	119, 272, 437, 524, 638, 997, 1385
BceAI	ACGGC	1 cut(s)	1058
BciT130I	CCWGG	5 cut(s)	477, 558, 1101, 1370, 1550
BclI	TGATCA	3 cut(s)	193, 427, 979
BcoDI	GTCTC	3 cut(s)	302, 366, 1431
BfaI	CTAG	3 cut(s)	954, 965, 1278
BfmI	CTRYAG	3 cut(s)	172, 1290, 1585
BisI	GCNGC	4 cut(s)	231, 234, 624, 1293
BlsI	GCNGC	4 cut(s)	232, 235, 625, 1294
Bme1390I	CCNGG	5 cut(s)	477, 558, 1101, 1370, 1550
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	2 cut(s)	632, 841
BmrFI	CCNGG	5 cut(s)	477, 558, 1101, 1370, 1550
BmsI	GCATC	4 cut(s)	959, 1083, 1303, 1450
BpiI	GAAGAC	2 cut(s)	41, 1139
BpmI	CTGGAG	2 cut(s)	315, 1424
Bpu10I	CCTNAGC	2 cut(s)	237, 717
BsaAI	YACGTR	2 cut(s)	1440, 1466
BsaJI	CCNNGG	5 cut(s)	263, 556, 634, 1100, 1369
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	1057, 1087
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 1555
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	7 cut(s)	939, 1141, 1214, 1258, 1381, 1407, 1516
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	3 cut(s)	88, 430, 1309
BseBI	CCWGG	5 cut(s)	477, 558, 1101, 1370, 1550
BseDI	CCNNGG	5 cut(s)	263, 556, 634, 1100, 1369
BseGI	GGATG	5 cut(s)	580, 798, 803, 1098, 1482
BseLI	CCNNNNNNNGG	2 cut(s)	817, 1555
BseMI	GCAATG	3 cut(s)	88, 430, 1309
BseMII	CTCAG	4 cut(s)	708, 867, 1331, 1442
BseNI	ACTGG	7 cut(s)	939, 1141, 1214, 1258, 1381, 1407, 1516
BseRI	GAGGAG	1 cut(s)	1282
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	4 cut(s)	217, 220, 610, 1304
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	839
BshTI	ACCGGT	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	1594
BsiSI	CCGG	1 cut(s)	843
BslI	CCNNNNNNNGG	2 cut(s)	817, 1555
BsmAI	GTCTC	3 cut(s)	302, 366, 1431
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	102, 1594
Bsp143I	GATC	5 cut(s)	16, 193, 427, 552, 979
BspACI	CCGC	2 cut(s)	5, 435
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	4 cut(s)	709, 868, 1330, 1441
BspHI	TCATGA	2 cut(s)	364, 1122
BspLI	GGNNCC	2 cut(s)	632, 841
BspMAI	CTGCAG	1 cut(s)	1294
BspPI	GGATC	2 cut(s)	24, 547
BspT107I	GGYRCC	1 cut(s)	839
BsrDI	GCAATG	3 cut(s)	88, 430, 1309
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	7 cut(s)	939, 1141, 1214, 1258, 1381, 1407, 1516
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	5 cut(s)	263, 556, 634, 1100, 1369
BssMI	GATC	5 cut(s)	16, 193, 427, 552, 979
BssT1I	CCWWGG	2 cut(s)	263, 634
Bst2UI	CCWGG	5 cut(s)	477, 558, 1101, 1370, 1550
Bst4CI	ACNGT	2 cut(s)	168, 695
Bst6I	CTCTTC	1 cut(s)	1475
BstBAI	YACGTR	2 cut(s)	1440, 1466
BstC8I	GCNNGC	4 cut(s)	60, 482, 1146, 1150
BstDEI	CTNAG	7 cut(s)	237, 717, 876, 896, 1037, 1317, 1428
BstF5I	GGATG	5 cut(s)	580, 798, 803, 1098, 1482
BstKTI	GATC	5 cut(s)	19, 196, 430, 555, 982
BstMAI	GTCTC	3 cut(s)	302, 366, 1431
BstMBI	GATC	5 cut(s)	16, 193, 427, 552, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	481, 533, 1042, 1365, 1469
BstNI	CCWGG	5 cut(s)	477, 558, 1101, 1370, 1550
BstSCI	CCNGG	5 cut(s)	475, 556, 1099, 1368, 1548
BstSFI	CTRYAG	3 cut(s)	172, 1290, 1585
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	4 cut(s)	217, 220, 610, 1304
BstV2I	GAAGAC	2 cut(s)	41, 1139
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	2 cut(s)	264, 1376
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	5 cut(s)	580, 798, 803, 1098, 1482
BtsIMutI	CAGTG	6 cut(s)	700, 892, 946, 992, 1207, 1356
Cac8I	GCNNGC	4 cut(s)	60, 482, 1146, 1150
CciI	TCATGA	2 cut(s)	364, 1122
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	1 cut(s)	1047
Csp6I	GTAC	2 cut(s)	150, 1374
CspAI	ACCGGT	1 cut(s)	842
CviAII	CATG	6 cut(s)	365, 722, 1123, 1181, 1473, 1595
CviQI	GTAC	2 cut(s)	150, 1374
DdeI	CTNAG	7 cut(s)	237, 717, 876, 896, 1037, 1317, 1428
DpnI	GATC	5 cut(s)	18, 195, 429, 554, 981
DpnII	GATC	5 cut(s)	16, 193, 427, 552, 979
Eam1104I	CTCTTC	1 cut(s)	1475
EarI	CTCTTC	1 cut(s)	1475
Eco130I	CCWWGG	2 cut(s)	263, 634
Eco32I	GATATC	2 cut(s)	883, 1078
Eco47I	GGWCC	1 cut(s)	944
Eco57I	CTGAAG	3 cut(s)	727, 1557, 1589
Eco81I	CCTNAGG	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	5 cut(s)	475, 556, 1099, 1368, 1548
EcoRV	GATATC	2 cut(s)	883, 1078
EcoT14I	CCWWGG	2 cut(s)	263, 634
ErhI	CCWWGG	2 cut(s)	263, 634
FaeI	CATG	6 cut(s)	368, 725, 1126, 1184, 1476, 1598
FalI	AAGNNNNNCTT	4 cut(s)	848, 880, 1132, 1164
FatI	CATG	6 cut(s)	364, 721, 1122, 1180, 1472, 1594
FauNDI	CATATG	2 cut(s)	106, 304
FbaI	TGATCA	3 cut(s)	193, 427, 979
Fnu4HI	GCNGC	4 cut(s)	231, 234, 624, 1293
FokI	GGATG	5 cut(s)	587, 790, 805, 1105, 1489
Fsp4HI	GCNGC	4 cut(s)	231, 234, 624, 1293
FspBI	CTAG	3 cut(s)	954, 965, 1278
GluI	GCNGC	4 cut(s)	231, 234, 624, 1293
GsuI	CTGGAG	2 cut(s)	315, 1424
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	843
HgaI	GACGC	1 cut(s)	1047
Hin1II	CATG	6 cut(s)	368, 725, 1126, 1184, 1476, 1598
HincII	GTYRAC	1 cut(s)	1085
HindII	GTYRAC	1 cut(s)	1085
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	9 cut(s)	328, 359, 821, 890, 926, 1213, 1414, 1483, 1545
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	4 cut(s)	562, 845, 1465, 1570
Hpy166II	GTNNAC	3 cut(s)	776, 1085, 1437
Hpy188I	TCNGA	4 cut(s)	871, 1248, 1431, 1537
Hpy188III	TCNNGA	7 cut(s)	53, 332, 365, 716, 965, 1123, 1487
Hpy8I	GTNNAC	3 cut(s)	776, 1085, 1437
HpyAV	CCTTC	7 cut(s)	3, 196, 751, 830, 1134, 1266, 1549
HpyCH4III	ACNGT	2 cut(s)	168, 695
HpyCH4IV	ACGT	2 cut(s)	1439, 1465
HpyF10VI	GCNNNNNNNGC	5 cut(s)	481, 533, 1042, 1365, 1469
HpyF3I	CTNAG	7 cut(s)	237, 717, 876, 896, 1037, 1317, 1428
HpySE526I	ACGT	2 cut(s)	1439, 1465
Hsp92II	CATG	6 cut(s)	368, 725, 1126, 1184, 1476, 1598
Ksp22I	TGATCA	3 cut(s)	193, 427, 979
Kzo9I	GATC	5 cut(s)	16, 193, 427, 552, 979
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	4 cut(s)	217, 220, 610, 1304
LweI	GCATC	4 cut(s)	959, 1083, 1303, 1450
MaeI	CTAG	3 cut(s)	954, 965, 1278
MaeII	ACGT	2 cut(s)	1439, 1465
MaeIII	GTNAC	5 cut(s)	90, 241, 325, 736, 887
MalI	GATC	5 cut(s)	18, 195, 429, 554, 981
MboI	GATC	5 cut(s)	16, 193, 427, 552, 979
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	102, 1594
MlyI	GAGTC	4 cut(s)	322, 368, 884, 1492
MmeI	TCCRAC	2 cut(s)	336, 475
MnlI	CCTC	9 cut(s)	81, 106, 553, 595, 871, 940, 1083, 1260, 1537
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	5 cut(s)	477, 558, 1101, 1370, 1550
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	5 cut(s)	477, 558, 1101, 1370, 1550
MwoI	GCNNNNNNNGC	5 cut(s)	481, 533, 1042, 1365, 1469
NdeI	CATATG	2 cut(s)	106, 304
NdeII	GATC	5 cut(s)	16, 193, 427, 552, 979
NlaIII	CATG	6 cut(s)	368, 725, 1126, 1184, 1476, 1598
NlaIV	GGNNCC	2 cut(s)	632, 841
NmuCI	GTSAC	3 cut(s)	90, 325, 887
PagI	TCATGA	2 cut(s)	364, 1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	5 cut(s)	821, 926, 1213, 1414, 1545
PfoI	TCCNGGA	1 cut(s)	1548
PinAI	ACCGGT	1 cut(s)	842
PkrI	GCNGC	4 cut(s)	232, 235, 625, 1294
PleI	GAGTC	4 cut(s)	322, 367, 884, 1491
PpsI	GAGTC	4 cut(s)	322, 367, 884, 1491
Ppu21I	YACGTR	2 cut(s)	1440, 1466
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	5 cut(s)	475, 556, 1099, 1368, 1548
PspGI	CCWGG	5 cut(s)	475, 556, 1099, 1368, 1548
PspN4I	GGNNCC	2 cut(s)	632, 841
PspPI	GGNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	1294
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	2 cut(s)	151, 1375
RsaNI	GTAC	2 cut(s)	150, 1374
RseI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	4 cut(s)	231, 234, 624, 1293
Sau3AI	GATC	5 cut(s)	16, 193, 427, 552, 979
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	4 cut(s)	322, 368, 884, 1492
ScrFI	CCNGG	5 cut(s)	477, 558, 1101, 1370, 1550
SduI	GDGCHC	2 cut(s)	102, 1594
SfaNI	GCATC	4 cut(s)	959, 1083, 1303, 1450
SfcI	CTRYAG	3 cut(s)	172, 1290, 1585
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	6 cut(s)	105, 369, 435, 489, 975, 1127
SsiI	CCGC	2 cut(s)	5, 435
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	3 cut(s)	954, 965, 1278
StyD4I	CCNGG	5 cut(s)	475, 556, 1099, 1368, 1548
StyI	CCWWGG	2 cut(s)	263, 634
TaaI	ACNGT	2 cut(s)	168, 695
TaiI	ACGT	2 cut(s)	1442, 1468
TaqI	TCGA	3 cut(s)	52, 1159, 1508
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	5 cut(s)	821, 926, 1213, 1414, 1545
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	6 cut(s)	700, 892, 946, 999, 1214, 1356
TseFI	GTSAC	3 cut(s)	90, 325, 887
TseI	GCWGC	4 cut(s)	230, 233, 623, 1292
Tsp45I	GTSAC	3 cut(s)	90, 325, 887
TspDTI	ATGAA	9 cut(s)	127, 291, 591, 1139, 1169, 1178, 1413, 1493, 1508
TspRI	CASTG	6 cut(s)	700, 892, 946, 999, 1214, 1356
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	5 cut(s)	344, 406, 517, 700, 1341
XbaI	TCTAGA	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	3 cut(s)	954, 965, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.