Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016058

Physical Location & Seq

Genomic Coordinates Reverse (-)

7148805 .. 7151010

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G095400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAACTCAATTCTTCATCAAATTGCGCAATCTGGGTTGAATCTAGAGTCTCTGAACGTTTCCAAGCAACCAACTTTACCAGTGGTTGGTTTAAGAGCGTTGGGCTCCAAAATGATGGATTTGAAGAGTTTGAACTGCTCCAAGATGAGGTGCTTTGGGGATTCTGACCTGAATGTGATTGCAGAGTCATTTCCATGCCTTGAAGAGCTTGACATCAGCTATCATGCGGATGATTCCACAACTGGGTCGAAGCCCATATCTGATTTGGGCATCTTTTCATTGTCATTGAAGCTCAAGAGCCTGAGGAAGATCAACCTTTCCGGTAATAGCTTCATTACTGATAAGTCCCTTGTGTTTTTGTCTACCAACTGCTTGTTGTTAAGCCAAGTTGTGCTTCACTTTTGTAACTTTATATCACTGAATGGTATATCCAAGCTCATCCATGGCTGTTCTCACTTGAATTCTATTTCGGTTCATGGAATTGGGAATCCTTCTGTTAATGCAGCATTCAAAGTACCATTCCTAAGCTCGAAAGCTTTATGGGCTATTGCTCTTTCGGATTCCGATATTTCGGATGAATTTCTGTATGCAGTTGCTGAAGCACGTTTTCCTCTGAAGAAGCTCACTCTTTCTAGATGCGCAAACTACAGTTTTTCTGGAATTTCGGTTTTGTTGAATGAGTATCAATCTCTTGAGTACTTAAATCTTGAAGCAGCATATTTTCTTAGGGACAAGGACATAGCTGAGCTATCCAGGTTCCTCCATAGTATCAATCATATAAACCTTAGTCATTGCTATGGGTTGACCTGTATCACCTTCTACACGCTCATAAAAAACTGTCTGGTTTTGGATAAGTTGGAAATGGTAGCGACAAGTATTGGGGAGGAAAACATTGAGACTGACTTTAAGGCAAGCCATGGAATCAAATCTTTAAACTTGGCAAACAGTTCATTGGGCAATAACTTTATAACAAGTTTTGCATCTATTTGCCCCAAATTGGAACTGCTCAATTTGAGCAAATGTAAGGGAATTACAGAAGAAGGCATAGTAGAAGTATTGAAGAGATGCTCTGAGATTAGACAATTGGAGGTAAACCACATTGGAGGGATGACGGATTCTTTTTTGCACCTTGAGTTTGAACTTCCCAAGTTGAAGGTGTTGTCTCTAATGTTTTCTGGAATCGATGATGATGCGTTGGCTATGATTGGTAAAAGATGTTGCAGGCTACTGAAATTAGACTTGGCAGGCTGCTTCAGTTTGACATCAAAGGGGGTGAAGGAAGTGGTGGAAAACTGCAAAGAATTGAAGGAGATAAATTTGAAGTGGTGTAATAAGTTCAGTGCTGATATTGTTCCTTGGATGGTGTTTTCAAGACCATCACTGAAGAAAATAGTTCCTCCTAGTCGTTTTGTTCTTACTGGAAGACAAAGGAACCTTTTCTTGCGTCATGGGTGTGCGGTGTATGACGGGGGTGCCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04111 ko04120 map04111 map04120

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

495

Amino Acids

54.67

Weight (kDa)

7.78

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80630
fragaria_vesca	FvH4_6g28940
prunus_persica	Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis	pycom17g22470
rosa_chinensis	RchiOBHm_Chr2g0133501
rosa_laevigata	RLG00000019348
rosa_multiflora	Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111020
rosa_rugosa	Rorug02G0312400
rosa_samantha	Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
Acc16I	TGCGCA	2 cut(s)	27, 640
AccB1I	GGYRCC	1 cut(s)	1472
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	362
AciI	CCGC	2 cut(s)	227, 1457
AclI	AACGTT	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	460, 578, 660, 1315
AcuI	CTGAAG	4 cut(s)	618, 635, 1237, 1403
AfaI	GTAC	2 cut(s)	516, 698
AfiI	CCNNNNNNNGG	4 cut(s)	86, 147, 243, 997
AjnI	CCWGG	1 cut(s)	752
AjuI	GAANNNNNNNTTGG	4 cut(s)	378, 410, 1223, 1255
Alw26I	GTCTC	3 cut(s)	54, 890, 1167
AlwNI	CAGNNNCTG	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	503, 713, 1248
ApoI	RAATTY	4 cut(s)	460, 578, 660, 1315
Asp700I	GAANNNNTTC	1 cut(s)	1436
AspLEI	GCGC	2 cut(s)	28, 641
AsuHPI	GGTGA	2 cut(s)	805, 1285
AxyI	CCTNAGG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	1472
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	1429
BbvI	GCAGC	3 cut(s)	515, 725, 1235
BccI	CCATC	3 cut(s)	109, 1354, 1384
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BciT130I	CCWGG	1 cut(s)	754
BcoDI	GTCTC	3 cut(s)	54, 890, 1167
BfaI	CTAG	3 cut(s)	44, 633, 1401
BfmI	CTRYAG	1 cut(s)	646
BisI	GCNGC	3 cut(s)	504, 714, 1249
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	3 cut(s)	505, 715, 1250
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	754
BmiI	GGNNCC	4 cut(s)	106, 758, 1433, 1474
BmrFI	CCNGG	1 cut(s)	754
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	5 cut(s)	279, 626, 989, 1055, 1180
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	1429
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	3 cut(s)	278, 713, 1151
Bsa29I	ATCGAT	1 cut(s)	1182
BsaJI	CCNNGG	3 cut(s)	442, 916, 1355
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 147, 243, 997
Bse1I	ACTGG	3 cut(s)	80, 247, 1423
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	3 cut(s)	442, 916, 1355
BseGI	GGATG	5 cut(s)	235, 438, 580, 1113, 1365
BseLI	CCNNNNNNNGG	4 cut(s)	86, 147, 243, 997
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	3 cut(s)	293, 735, 1062
BseNI	ACTGG	3 cut(s)	80, 247, 1423
BseXI	GCAGC	3 cut(s)	515, 725, 1235
BshNI	GGYRCC	1 cut(s)	1472
BshVI	ATCGAT	1 cut(s)	1182
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	331, 743
BslI	CCNNNNNNNGG	4 cut(s)	86, 147, 243, 997
BsmAI	GTCTC	3 cut(s)	54, 890, 1167
BsmFI	GGGAC	2 cut(s)	331, 743
BsmI	GAATGC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	309
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	2 cut(s)	442, 916
BspACI	CCGC	2 cut(s)	227, 1457
BspCNI	CTCAG	3 cut(s)	294, 736, 1063
BspDI	ATCGAT	1 cut(s)	1182
BspLI	GGNNCC	4 cut(s)	106, 758, 1433, 1474
BspQI	GCTCTTC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	1472
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	3 cut(s)	80, 247, 1423
BssECI	CCNNGG	3 cut(s)	442, 916, 1355
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	3 cut(s)	442, 916, 1355
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	650, 839, 947
Bst6I	CTCTTC	3 cut(s)	119, 198, 1055
BstC8I	GCNNGC	3 cut(s)	913, 1223, 1246
BstDEI	CTNAG	6 cut(s)	302, 524, 725, 744, 785, 1071
BstDSI	CCRYGG	2 cut(s)	442, 916
BstF5I	GGATG	5 cut(s)	235, 438, 580, 1113, 1365
BstHHI	GCGC	2 cut(s)	28, 641
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	3 cut(s)	54, 890, 1167
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	752
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	3 cut(s)	515, 725, 1235
BstV2I	GAAGAC	1 cut(s)	1429
BstXI	CCANNNNNNTGG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	1182
Bsu36I	CCTNAGG	1 cut(s)	302
BsuTUI	ATCGAT	1 cut(s)	1182
BtgI	CCRYGG	2 cut(s)	442, 916
BtsCI	GGATG	5 cut(s)	235, 438, 580, 1113, 1365
BtsIMutI	CAGTG	4 cut(s)	87, 416, 1345, 1379
Cac8I	GCNNGC	3 cut(s)	913, 1223, 1246
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	28, 641
ClaI	ATCGAT	1 cut(s)	1182
CseI	GACGC	1 cut(s)	1433
Csp6I	GTAC	2 cut(s)	515, 697
CviAII	CATG	6 cut(s)	195, 224, 443, 476, 917, 1448
CviQI	GTAC	2 cut(s)	515, 697
DdeI	CTNAG	6 cut(s)	302, 524, 725, 744, 785, 1071
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DraI	TTTAAA	1 cut(s)	933
Eam1104I	CTCTTC	3 cut(s)	119, 198, 1055
EarI	CTCTTC	3 cut(s)	119, 198, 1055
Eco130I	CCWWGG	3 cut(s)	442, 916, 1355
Eco24I	GRGCYC	1 cut(s)	107
Eco57I	CTGAAG	4 cut(s)	618, 635, 1237, 1403
Eco81I	CCTNAGG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	752
EcoT14I	CCWWGG	3 cut(s)	442, 916, 1355
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	3 cut(s)	442, 916, 1355
FaeI	CATG	6 cut(s)	198, 227, 446, 479, 920, 1451
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	331, 743
FatI	CATG	6 cut(s)	194, 223, 442, 475, 916, 1447
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	504, 714, 1249
FokI	GGATG	5 cut(s)	242, 425, 587, 1120, 1372
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	504, 714, 1249
FspBI	CTAG	3 cut(s)	44, 633, 1401
FspI	TGCGCA	2 cut(s)	27, 640
GlaI	GCGC	2 cut(s)	27, 640
GluI	GCNGC	3 cut(s)	504, 714, 1249
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	1433
HhaI	GCGC	2 cut(s)	28, 641
Hin1II	CATG	6 cut(s)	198, 227, 446, 479, 920, 1451
Hin6I	GCGC	2 cut(s)	26, 639
HinP1I	GCGC	2 cut(s)	26, 639
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	1 cut(s)	534
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	805, 1285
Hpy166II	GTNNAC	3 cut(s)	363, 804, 1093
Hpy188I	TCNGA	8 cut(s)	54, 166, 262, 559, 565, 574, 615, 1072
Hpy188III	TCNNGA	8 cut(s)	44, 295, 633, 657, 692, 707, 1176, 1371
Hpy8I	GTNNAC	3 cut(s)	363, 804, 1093
HpyAV	CCTTC	6 cut(s)	501, 826, 1034, 1147, 1270, 1300
HpyCH4III	ACNGT	3 cut(s)	650, 839, 947
HpyCH4IV	ACGT	2 cut(s)	57, 604
HpyCH4V	TGCA	7 cut(s)	182, 503, 590, 980, 1126, 1221, 1296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	6 cut(s)	302, 524, 725, 744, 785, 1071
HpySE526I	ACGT	2 cut(s)	57, 604
Hsp92II	CATG	6 cut(s)	198, 227, 446, 479, 920, 1451
HspAI	GCGC	2 cut(s)	26, 639
Kzo9I	GATC	1 cut(s)	309
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	110, 143
Lsp1109I	GCAGC	3 cut(s)	515, 725, 1235
LweI	GCATC	5 cut(s)	279, 626, 989, 1055, 1180
MaeI	CTAG	3 cut(s)	44, 633, 1401
MaeII	ACGT	2 cut(s)	57, 604
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	9 cut(s)	5, 136, 215, 319, 628, 1049, 1072, 1396, 1434
MfeI	CAATTG	1 cut(s)	1082
MhlI	GDGCHC	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	56, 194
MmeI	TCCRAC	1 cut(s)	837
MnlI	CCTC	8 cut(s)	141, 297, 621, 770, 877, 1081, 1097, 1407
MroXI	GAANNNNTTC	1 cut(s)	1436
MseI	TTAA	6 cut(s)	92, 380, 498, 701, 906, 932
MslI	CAYNNNNRTG	4 cut(s)	193, 228, 795, 1452
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	754
MunI	CAATTG	1 cut(s)	1082
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	2 cut(s)	442, 916
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	6 cut(s)	198, 227, 446, 479, 920, 1451
NlaIV	GGNNCC	4 cut(s)	106, 758, 1433, 1474
NsbI	TGCGCA	2 cut(s)	27, 640
PciSI	GCTCTTC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	506
PdmI	GAANNNNTTC	1 cut(s)	1436
PfeI	GAWTC	8 cut(s)	40, 161, 233, 487, 560, 921, 1115, 1179
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	505, 715, 1250
PleI	GAGTC	2 cut(s)	55, 193
PpsI	GAGTC	2 cut(s)	55, 193
PsiI	TTATAA	1 cut(s)	968
Psp1406I	AACGTT	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	106, 758, 1433, 1474
PstNI	CAGNNNCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	516, 698
RsaNI	GTAC	2 cut(s)	515, 697
RseI	CAYNNNNRTG	4 cut(s)	193, 228, 795, 1452
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	6 cut(s)	92, 380, 498, 701, 906, 932
SatI	GCNGC	3 cut(s)	504, 714, 1249
Sau3AI	GATC	1 cut(s)	309
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	2 cut(s)	56, 194
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	5 cut(s)	279, 626, 989, 1055, 1180
SfcI	CTRYAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	4 cut(s)	193, 228, 795, 1452
SmlI	CTYRAG	3 cut(s)	293, 692, 1130
SmoI	CTYRAG	3 cut(s)	293, 692, 1130
SsiI	CCGC	2 cut(s)	227, 1457
SspMI	CTAG	3 cut(s)	44, 633, 1401
StyD4I	CCNGG	1 cut(s)	752
StyI	CCWWGG	3 cut(s)	442, 916, 1355
TaaI	ACNGT	3 cut(s)	650, 839, 947
TaiI	ACGT	2 cut(s)	60, 607
TaqI	TCGA	3 cut(s)	248, 530, 1182
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	8 cut(s)	40, 161, 233, 487, 560, 921, 1115, 1179
Tru1I	TTAA	6 cut(s)	92, 380, 498, 701, 906, 932
Tru9I	TTAA	6 cut(s)	92, 380, 498, 701, 906, 932
TscAI	CASTG	4 cut(s)	87, 423, 1345, 1386
TseI	GCWGC	3 cut(s)	503, 713, 1248
TspDTI	ATGAA	7 cut(s)	5, 17, 267, 322, 464, 591, 939
TspGWI	ACGGA	1 cut(s)	1127
TspRI	CASTG	4 cut(s)	87, 423, 1345, 1386
Van91I	CCANNNNNTGG	1 cut(s)	86
XapI	RAATTY	4 cut(s)	460, 578, 660, 1315
XbaI	TCTAGA	2 cut(s)	43, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	1436
XspI	CTAG	3 cut(s)	44, 633, 1401
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.