Rh2BG370900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016058
Physical Location & Seq
Forward (+)
51855523 .. 51857895
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG370900.1

Sequence Viewer

Length: 1755 bp
ATGGCAGAAAACTCATCAGATTTGCCACGAGAATGCTGGGAACACATATTCAATCTTCTAGACGACCCTTCTCACTTCTCCTCACTCTCTCTGGTCTCCAAGCAATTCCTCTACATCACCAATCGCCTCTTACTCACTCTCAAACTCTCCGATTCAACACTCCAATCCATTCTCCCCCGTCTTCTCCATAGATTCCGATGGCTGAAACATATAGACCTCAGTGGGTTCAGCGGCGACATGAACCCTCTTCTTTATCGAATTGCCATATCTGGGTTGAACCTGGAATCCCTCAATGTCTCCAACCAAACATGTTTGCCAGTAAATGGGATAAGAGTGTTTGGCTCCAAAATGATGAACTTGAAGTGTTTGGATTGCTCCAGGGTCAAGTTCTTACAGGACAGTGATCTAAACTTGATTGCAGAATCGTTTCCTTTGCTCCAAGAGCTTGACATTAGCTACCCAGAATTTGGATCCACCAATTCCTCAACTGGGTCATCGGATTGGAAGCCCATATCCGATTCTGGGATATTTTCACTGACATTGAATCTCAAGGGCCTGAGGAGGATCAACCTTTCTGGTAATCACTTCATTACTGATCTCTCCCTTGTGCATCTGTCCAAGCATTGTGTGCTTTTGACCCAGGTTGTTATTCATTACTGTGATTTCATAACACAAAATGGTGTGGCTAAACTGATCCGTGCCTGTTGTCAATTGAGTTGTGTTTCGGTTTGTGGAATTGGGGGGTCTTTGATTTGTTTGTTAGGTTATTCCTCGTTGAGCTTTGGATCAGTAGGATGTTCATTGATAAGCTCCAGGGCTTTATCTGGTATTGATTTTTCGGACTCTGTGGTTTCGGATGAATTGCTATGTTCAGTAGCAGAAGCATGTTTTCCTATGAAGAAGCTCGTTCTTTCTAATTGTACAAGTTTTACTTTTGCTGGAATATCATTTTTGGTGAGTCATTACCCGTTTCTTGAGTACTTGGATCTTGAAGGAGCTTATTTTCTCACAGATAATGAAATCATTGAGCTATCCATGTCCCTTCATAGTATCACATACATAAACCTTAGCTATTGCAGTAGTCTCACCGGTGTCACCTTGTACACCCTCACAAGAAACTCTCTGGTTTTAAATGAAATCAAGATGGTAGGAACGAATGTTGGGGATGAAGCCTTGGAAACCGATGTCATGCCAAACCTTGGAGTCAAGTCTCTTATGTTGTCCCAAAATACTTCAATGGGAAATGGGTTTATTGCTAACTATGTATCCATTTGCCCAAATTTGGAGCTGCTTGATTTGAGCCATTGTGTAAACATCACAGAAGACGGCATTGTAGAAGTTCTGAAGAGATGCTCTAGGATTAGGCATTTGGAGATAAATGAATGTGGTTTGATGAAGAATATTTCAATTGACTTTGAGCTTCCCAAGTTGGAGGTATTGTATGCAAGAGGATTGAGAATTGATGATGATATGTTGGCTATAATTGGGAAAAGATGTTCCAGGCTACAGCAATTGGACTTGTCGGGCTGCCTGAATGTGACAGCAAACGGGGTGAAGCAAGTGGTGGCGAACTGCAAAGAAATTAAGGAGATAAATTTGAGGTCGTGTGATAACGTCAGTGTTGATATTATTCCTTGGATGGTGTTTTCAAGGCCGTCACTCAAGAAAATAGTACAACCTTGTGGTGGCTCTGTTCCTACTGAGAGCCAAAGAAACCATTTCTTGCGTCATGGCTGTCTTGTTTGTGAAGGCTAG

Protein Analysis

584

Amino Acids

64.59

Weight (kDa)

5.8

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016058)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80630
fragaria_vesca FvH4_6g28940
prunus_persica Prupe.3G095400_v2.0.a1 Prupe.3G095400_v2.0.a1
pyrus_communis pycom17g22470
rosa_chinensis RchiOBHm_Chr2g0133501
rosa_laevigata RLG00000019348
rosa_multiflora Rmu_co8455141.1_g000001 Rmu_sc0017323.1_g000002
rosa_roxburghii Rroxscaffold_2G00111020
rosa_rugosa Rorug02G0312400
rosa_samantha Rh2AG365400 Rh2BG370900 Rh2CG348500 Rh2DG387700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 323, 467, 1199
AciI CCGC 1 cut(s) 231
AclWI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
AcsI RAATTY 3 cut(s) 464, 1279, 1594
AcuI CTGAAG 1 cut(s) 1364
AfaI GTAC 4 cut(s) 922, 980, 1103, 1674
AfiI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
AflIII ACRYGT 1 cut(s) 308
AgeI ACCGGT 1 cut(s) 1088
AgsI TTSAA 9 cut(s) 52, 156, 277, 361, 544, 992, 1236, 1407, 1650
AjnI CCWGG 5 cut(s) 279, 377, 639, 812, 1499
AloI GAACNNNNNNTCC 4 cut(s) 269, 301, 1480, 1512
Alw26I GTCTC 4 cut(s) 100, 301, 1088, 1215
AlwI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
AoxI GGCC 2 cut(s) 553, 1652
ApeKI GCWGC 2 cut(s) 1288, 1527
ApoI RAATTY 3 cut(s) 464, 1279, 1594
AsiGI ACCGGT 1 cut(s) 1088
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 5 cut(s) 109, 967, 1078, 1087, 1564
AxyI CCTNAGG 1 cut(s) 557
BamHI GGATCC 1 cut(s) 470
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 173, 1329
BbvI GCAGC 2 cut(s) 1275, 1514
BccI CCATC 3 cut(s) 192, 1138, 1633
BceAI ACGGC 2 cut(s) 1342, 1639
BciT130I CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BciVI GTATCC 1 cut(s) 1276
BcoDI GTCTC 4 cut(s) 100, 301, 1088, 1215
BfaI CTAG 3 cut(s) 59, 1356, 1753
BfmI CTRYAG 1 cut(s) 1505
BfuI GTATCC 1 cut(s) 1276
BisI GCNGC 3 cut(s) 232, 1289, 1528
BlsI GCNGC 3 cut(s) 233, 1290, 1529
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 5 cut(s) 281, 379, 641, 814, 1501
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 2 cut(s) 343, 472
BmrFI CCNGG 5 cut(s) 281, 379, 641, 814, 1501
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 619, 1340
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 2 cut(s) 173, 1329
BpmI CTGGAG 2 cut(s) 361, 796
Bpu10I CCTNAGC 1 cut(s) 1067
BpuEI CTTGAG 3 cut(s) 533, 995, 1646
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BsaWI WCCGGW 1 cut(s) 1088
BsaXI ACNNNNNCTCC 2 cut(s) 1424, 1454
Bsc4I CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
Bse118I RCCGGY 1 cut(s) 1088
Bse1I ACTGG 2 cut(s) 317, 493
Bse21I CCTNAGG 1 cut(s) 557
BseBI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BseDI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BseGI GGATG 4 cut(s) 800, 862, 1171, 1644
BseLI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
BseMII CTCAG 3 cut(s) 232, 548, 1692
BseNI ACTGG 2 cut(s) 317, 493
BseRI GAGGAG 2 cut(s) 70, 574
BseXI GCAGC 2 cut(s) 1275, 1514
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 555, 1654
BshTI ACCGGT 1 cut(s) 1088
BsiSI CCGG 1 cut(s) 1089
BslFI GGGAC 2 cut(s) 1024, 1207
BslI CCNNNNNNNGG 8 cut(s) 270, 323, 467, 489, 522, 1199, 1282, 1685
BsmAI GTCTC 4 cut(s) 100, 301, 1088, 1215
BsmFI GGGAC 2 cut(s) 1024, 1207
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 555, 1654
Bso31I GGTCTC 1 cut(s) 100
Bsp1407I TGTACA 2 cut(s) 920, 1101
Bsp143I GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 555, 1654
BspCNI CTCAG 3 cut(s) 231, 549, 1693
BspLI GGNNCC 2 cut(s) 343, 472
BspPI GGATC 6 cut(s) 465, 478, 572, 688, 793, 993
BspTNI GGTCTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 1088
BsrGI TGTACA 2 cut(s) 920, 1101
BsrI ACTGG 2 cut(s) 317, 493
BssAI RCCGGY 1 cut(s) 1088
BssECI CCNNGG 6 cut(s) 378, 639, 813, 1173, 1198, 1634
BssMI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 3 cut(s) 1173, 1198, 1634
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
Bst4CI ACNGT 2 cut(s) 401, 659
Bst6I CTCTTC 2 cut(s) 252, 1340
BstAPI GCANNNNNTGC 1 cut(s) 628
BstAUI TGTACA 2 cut(s) 920, 1101
BstDEI CTNAG 4 cut(s) 218, 557, 1067, 1701
BstF5I GGATG 4 cut(s) 800, 862, 1171, 1644
BstKTI GATC 7 cut(s) 406, 473, 567, 598, 696, 788, 988
BstMAI GTCTC 4 cut(s) 100, 301, 1088, 1215
BstMBI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
BstMWI GCNNNNNNNGC 2 cut(s) 442, 628
BstNI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
BstNSI RCATGY 2 cut(s) 312, 888
BstSCI CCNGG 5 cut(s) 279, 377, 639, 812, 1499
BstSFI CTRYAG 1 cut(s) 1505
BstV1I GCAGC 2 cut(s) 1275, 1514
BstV2I GAAGAC 2 cut(s) 173, 1329
BstX2I RGATCY 2 cut(s) 470, 985
BstYI RGATCY 2 cut(s) 470, 985
Bsu36I CCTNAGG 1 cut(s) 557
BsuI GTATCC 1 cut(s) 1276
BsuRI GGCC 2 cut(s) 555, 1654
BtsCI GGATG 4 cut(s) 800, 862, 1171, 1644
BtsIMutI CAGTG 4 cut(s) 226, 406, 533, 1624
Cfr10I RCCGGY 1 cut(s) 1088
Cfr13I GGNCC 1 cut(s) 553
CseI GACGC 1 cut(s) 1715
Csp6I GTAC 4 cut(s) 921, 979, 1102, 1673
CspAI ACCGGT 1 cut(s) 1088
CviAII CATG 6 cut(s) 238, 309, 885, 1036, 1189, 1730
CviQI GTAC 4 cut(s) 921, 979, 1102, 1673
DdeI CTNAG 4 cut(s) 218, 557, 1067, 1701
DpnI GATC 7 cut(s) 405, 472, 566, 597, 695, 787, 987
DpnII GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
DraI TTTAAA 1 cut(s) 1131
Eam1104I CTCTTC 2 cut(s) 252, 1340
EarI CTCTTC 2 cut(s) 252, 1340
Eco130I CCWWGG 3 cut(s) 1173, 1198, 1634
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 1364
Eco81I CCTNAGG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 5 cut(s) 279, 377, 639, 812, 1499
EcoT14I CCWWGG 3 cut(s) 1173, 1198, 1634
ErhI CCWWGG 3 cut(s) 1173, 1198, 1634
FaeI CATG 6 cut(s) 241, 312, 888, 1039, 1192, 1733
FalI AAGNNNNNCTT 2 cut(s) 916, 948
FaqI GGGAC 2 cut(s) 1024, 1207
FatI CATG 6 cut(s) 237, 308, 884, 1035, 1188, 1729
Fnu4HI GCNGC 3 cut(s) 232, 1289, 1528
FokI GGATG 4 cut(s) 807, 869, 1178, 1651
Fsp4HI GCNGC 3 cut(s) 232, 1289, 1528
FspBI CTAG 3 cut(s) 59, 1356, 1753
GluI GCNGC 3 cut(s) 232, 1289, 1528
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 361, 796
HaeIII GGCC 2 cut(s) 555, 1654
HapII CCGG 1 cut(s) 1089
HgaI GACGC 1 cut(s) 1715
Hin1II CATG 6 cut(s) 241, 312, 888, 1039, 1192, 1733
HinfI GANTC 9 cut(s) 152, 192, 284, 422, 518, 544, 842, 958, 1203
HpaII CCGG 1 cut(s) 1089
HphI GGTGA 5 cut(s) 109, 967, 1078, 1087, 1564
Hpy166II GTNNAC 2 cut(s) 1104, 1312
Hpy188I TCNGA 8 cut(s) 19, 151, 197, 499, 517, 841, 856, 1344
Hpy188III TCNNGA 5 cut(s) 59, 974, 989, 1141, 1663
Hpy8I GTNNAC 2 cut(s) 1104, 1312
HpyAV CCTTC 4 cut(s) 78, 986, 1052, 1742
HpyCH4III ACNGT 2 cut(s) 401, 659
HpyCH4IV ACGT 1 cut(s) 1614
HpyCH4V TGCA 5 cut(s) 419, 610, 1077, 1445, 1575
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 628
HpyF3I CTNAG 4 cut(s) 218, 557, 1067, 1701
HpySE526I ACGT 1 cut(s) 1614
Hsp92II CATG 6 cut(s) 241, 312, 888, 1039, 1192, 1733
Kzo9I GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
LmnI GCTCC 6 cut(s) 347, 380, 441, 815, 995, 1285
Lsp1109I GCAGC 2 cut(s) 1275, 1514
LweI GCATC 2 cut(s) 619, 1340
MaeI CTAG 3 cut(s) 59, 1356, 1753
MaeII ACGT 1 cut(s) 1614
MaeIII GTNAC 3 cut(s) 1093, 1537, 1656
MalI GATC 7 cut(s) 405, 472, 566, 597, 695, 787, 987
MboI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
MboII GAAGA 7 cut(s) 47, 173, 239, 910, 1334, 1357, 1408
MfeI CAATTG 3 cut(s) 710, 1407, 1511
MflI RGATCY 2 cut(s) 470, 985
MlyI GAGTC 3 cut(s) 836, 967, 1212
MmeI TCCRAC 2 cut(s) 324, 1410
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 1130, 1584
MslI CAYNNNNRTG 2 cut(s) 31, 657
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 1 cut(s) 1089
MspR9I CCNGG 5 cut(s) 281, 379, 641, 814, 1501
MunI CAATTG 3 cut(s) 710, 1407, 1511
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 5 cut(s) 281, 379, 641, 814, 1501
MwoI GCNNNNNNNGC 2 cut(s) 442, 628
NdeII GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
NlaIII CATG 6 cut(s) 241, 312, 888, 1039, 1192, 1733
NlaIV GGNNCC 2 cut(s) 343, 472
NmuCI GTSAC 3 cut(s) 1093, 1537, 1656
NspI RCATGY 2 cut(s) 312, 888
PciI ACATGT 1 cut(s) 308
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 6 cut(s) 152, 192, 284, 422, 518, 544
PflMI CCANNNNNTGG 3 cut(s) 323, 467, 1199
PinAI ACCGGT 1 cut(s) 1088
PkrI GCNGC 3 cut(s) 233, 1290, 1529
PleI GAGTC 3 cut(s) 836, 966, 1211
PpsI GAGTC 3 cut(s) 836, 966, 1211
PscI ACATGT 1 cut(s) 308
Psp6I CCWGG 5 cut(s) 279, 377, 639, 812, 1499
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 5 cut(s) 279, 377, 639, 812, 1499
PspN4I GGNNCC 2 cut(s) 343, 472
PspPI GGNCC 1 cut(s) 553
PsuI RGATCY 2 cut(s) 470, 985
RsaI GTAC 4 cut(s) 922, 980, 1103, 1674
RsaNI GTAC 4 cut(s) 921, 979, 1102, 1673
RseI CAYNNNNRTG 2 cut(s) 31, 657
SaqAI TTAA 2 cut(s) 1130, 1584
SatI GCNGC 3 cut(s) 232, 1289, 1528
Sau3AI GATC 7 cut(s) 403, 470, 564, 595, 693, 785, 985
Sau96I GGNCC 1 cut(s) 553
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 3 cut(s) 836, 967, 1212
ScrFI CCNGG 5 cut(s) 281, 379, 641, 814, 1501
SfaNI GCATC 2 cut(s) 619, 1340
SfcI CTRYAG 1 cut(s) 1505
SgrAI CRCCGGYG 1 cut(s) 1088
SmiMI CAYNNNNRTG 2 cut(s) 31, 657
SmlI CTYRAG 3 cut(s) 548, 974, 1661
SmoI CTYRAG 3 cut(s) 548, 974, 1661
SsiI CCGC 1 cut(s) 231
SspI AATATT 1 cut(s) 1402
SspMI CTAG 3 cut(s) 59, 1356, 1753
StyD4I CCNGG 5 cut(s) 279, 377, 639, 812, 1499
StyI CCWWGG 3 cut(s) 1173, 1198, 1634
TaaI ACNGT 2 cut(s) 401, 659
TaiI ACGT 1 cut(s) 1617
TaqI TCGA 1 cut(s) 256
TatI WGTACW 4 cut(s) 920, 978, 1101, 1672
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 6 cut(s) 152, 192, 284, 422, 518, 544
Tru1I TTAA 2 cut(s) 1130, 1584
Tru9I TTAA 2 cut(s) 1130, 1584
TscAI CASTG 4 cut(s) 226, 406, 540, 1624
TseFI GTSAC 3 cut(s) 1093, 1537, 1656
TseI GCWGC 2 cut(s) 1288, 1527
Tsp45I GTSAC 3 cut(s) 1093, 1537, 1656
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 4 cut(s) 226, 406, 540, 1624
Van91I CCANNNNNTGG 3 cut(s) 323, 467, 1199
XapI RAATTY 3 cut(s) 464, 1279, 1594
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 2 cut(s) 312, 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 3 cut(s) 59, 1356, 1753
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.