Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Reverse (-)

30339322 .. 30340385

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAACCGTCCATCAAAGGAGATCAAGAAATGTTAAAAATCAAGAAACAAGGTCATCAAGATCTTGAGTTGGGGTTGACCCTTTTGTCACGTGGAACCGCGACCTCATCAGAGCTCAATCTCATCGATTCTTTCAAAACCAGCTCATCATCGACTTCTCATCATCAGCACCAGCAAGAACAATTGGCAGATCCGAGAGTGTTCTCGTGTAATTATTGTCAAAGAAAGTTCTATAGTTCACAAGCGCTAGGCGGTCACCAAAACGCTCATAAACGTGAGCGCACCTTAGCCAAACGTGGACAGTATTACAAGATGACTCTCTCCTCCTTGCCTTCTTCAGCGTTTGCGTTTGGCCACGGTTCAGTCAGCAGATTCGCAAGCATGGCATCGTTACCATTACATGGCTCGGTGAATAACAGGTCAACGTTAGGGATTCAAGCTCATTCAACGATCCATAAGCCCAGCTTCTTAGGAAGACAAACGACGAGTTTAAGTCATGTTTTCAAACAGAGCATTCACCAGAAACCGACCATAGGAAAGATGTTGCCGGAGAAATTTCACCTTGAAGTCGCCGGAAATAATAACAGTAACATGGTTGCTGCTAAGTTGGAGAGAATTGGACATTTCAAGAGCAACCAAGAAGATCATAATCAGTTTAAGAAAATTGACTTGACTCTTAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.47

Weight (kDa)

9.9

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	99, 252
AclI	AACGTT	1 cut(s)	425
AclWI	GGATC	2 cut(s)	185, 445
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	321
AcvI	CACGTG	1 cut(s)	92
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	401, 533
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	6 cut(s)	136, 437, 447, 505, 566, 628
AluBI	AGCT	5 cut(s)	115, 144, 440, 465, 682
AluI	AGCT	5 cut(s)	115, 144, 440, 465, 682
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	185, 445
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	247, 282
AsuHPI	GGTGA	4 cut(s)	248, 421, 509, 551
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	677
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	6, 97
BmsI	GCATC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 533
Bse8I	GATNNNNATC	1 cut(s)	648
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	401, 533
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	548, 573
BslI	CCNNNNNNNGG	2 cut(s)	401, 533
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	22, 61, 190, 450, 643
BspACI	CCGC	2 cut(s)	99, 252
BspANI	GGCC	1 cut(s)	354
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	6, 97
BspPI	GGATC	2 cut(s)	185, 445
BspTI	CTTAAG	1 cut(s)	677
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	5 cut(s)	22, 61, 190, 450, 643
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst4CI	ACNGT	4 cut(s)	9, 303, 359, 587
BstAFI	CTTAAG	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	286, 469, 603
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	247, 282
BstKTI	GATC	5 cut(s)	25, 64, 193, 453, 646
BstMBI	GATC	5 cut(s)	22, 61, 190, 450, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	61, 190
BstYI	RGATCY	2 cut(s)	61, 190
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	2 cut(s)	247, 282
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	4 cut(s)	382, 401, 497, 592
CviJI	RGCY	9 cut(s)	115, 144, 290, 354, 405, 440, 460, 465, 682
CviKI_1	RGCY	9 cut(s)	115, 144, 290, 354, 405, 440, 460, 465, 682
DdeI	CTNAG	3 cut(s)	286, 469, 603
DpnI	GATC	5 cut(s)	24, 63, 192, 452, 645
DpnII	GATC	5 cut(s)	22, 61, 190, 450, 643
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	321
Eco72I	CACGTG	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	4 cut(s)	385, 404, 500, 595
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	4 cut(s)	381, 400, 496, 591
Fnu4HI	GCNGC	1 cut(s)	600
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	2 cut(s)	246, 281
GluI	GCNGC	1 cut(s)	600
GsaI	CCCAGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	548, 573
HhaI	GCGC	2 cut(s)	247, 282
Hin1II	CATG	4 cut(s)	385, 404, 500, 595
Hin6I	GCGC	2 cut(s)	245, 280
HinP1I	GCGC	2 cut(s)	245, 280
HincII	GTYRAC	2 cut(s)	78, 423
HindII	GTYRAC	2 cut(s)	78, 423
HinfI	GANTC	5 cut(s)	128, 316, 372, 433, 673
HpaII	CCGG	2 cut(s)	548, 573
HphI	GGTGA	4 cut(s)	248, 421, 509, 551
Hpy166II	GTNNAC	4 cut(s)	78, 239, 299, 423
Hpy188I	TCNGA	2 cut(s)	112, 195
Hpy188III	TCNNGA	5 cut(s)	26, 43, 59, 65, 628
Hpy8I	GTNNAC	4 cut(s)	78, 239, 299, 423
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	4 cut(s)	9, 303, 359, 587
HpyCH4IV	ACGT	4 cut(s)	91, 274, 295, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	286, 469, 603
HpySE526I	ACGT	4 cut(s)	91, 274, 295, 425
Hsp92II	CATG	4 cut(s)	385, 404, 500, 595
HspAI	GCGC	2 cut(s)	245, 280
Kzo9I	GATC	5 cut(s)	22, 61, 190, 450, 643
LpnPI	CCDG	7 cut(s)	154, 185, 403, 475, 533, 561, 586
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	4 cut(s)	91, 274, 295, 425
MaeIII	GTNAC	4 cut(s)	87, 254, 390, 587
MalI	GATC	5 cut(s)	24, 63, 192, 452, 645
MboI	GATC	5 cut(s)	22, 61, 190, 450, 643
MboII	GAAGA	3 cut(s)	327, 486, 653
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	2 cut(s)	61, 190
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	5 cut(s)	182, 211, 554, 615, 663
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	310, 667
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	2 cut(s)	115, 334
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	35, 491, 657, 678
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	548, 573
MunI	CAATTG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	5 cut(s)	22, 61, 190, 450, 643
NlaIII	CATG	4 cut(s)	385, 404, 500, 595
NlaIV	GGNNCC	2 cut(s)	6, 97
NmuCI	GTSAC	2 cut(s)	87, 254
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	128, 372, 433
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	2 cut(s)	310, 667
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
PpsI	GAGTC	2 cut(s)	310, 667
Ppu21I	YACGTR	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	92
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	6, 97
PsuI	RGATCY	2 cut(s)	61, 190
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	35, 491, 657, 678
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	5 cut(s)	22, 61, 190, 450, 643
SchI	GAGTC	2 cut(s)	310, 667
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	65, 677
SmoI	CTYRAG	2 cut(s)	65, 677
Sse9I	AATT	5 cut(s)	182, 211, 554, 615, 663
SsiI	CCGC	2 cut(s)	99, 252
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	117
TaaI	ACNGT	4 cut(s)	9, 303, 359, 587
TaiI	ACGT	4 cut(s)	94, 277, 298, 428
TaqI	TCGA	2 cut(s)	126, 152
TasI	AATT	5 cut(s)	182, 211, 554, 615, 663
TfiI	GAWTC	3 cut(s)	128, 372, 433
Tru1I	TTAA	4 cut(s)	35, 491, 657, 678
Tru9I	TTAA	4 cut(s)	35, 491, 657, 678
TseFI	GTSAC	2 cut(s)	87, 254
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	2 cut(s)	87, 254
Van91I	CCANNNNNTGG	1 cut(s)	401
Vha464I	CTTAAG	1 cut(s)	677
XapI	RAATTY	1 cut(s)	554
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.